HHsearch alignment for GI: 254781096 and conserved domain: PRK03806

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=564.17  Aligned_cols=402  Identities=19%  Similarity=0.272  Sum_probs=312.2

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEEC-CCHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf             607999461460878999999879869996078998899999889889967-9978868898999888989999889999
Q gi|254781096|r    8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIG-HKVENIDNAEILVLSTAIDKDNVECIAA   86 (474)
Q Consensus         8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g-~~~~~i~~~d~vV~spgi~~~~~~l~~a   86 (474)
T Consensus         7 k~v~V~GlG~sG~s~-~~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~~~~a   85 (438)
T PRK03806          7 KNVVIIGLGLTGLSC-VDFFLARGVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA   85 (438)
T ss_pred             CEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf             989999457888999-9999978996999989999005788645884665777966806799999899789989899999


Q ss_pred             HHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf             97799499538998864116851587045784047788886403444430575357333331001468542001102322
Q gi|254781096|r   87 RERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADES  166 (474)
Q Consensus        87 ~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~V~E~~e~  166 (474)
T Consensus        86 ~~~~i~i~seiel~~~~~~-~~iIaVTGTnGKTTTt~li~~iL~~~g~~~-~~gGNiG~p~-~~~~~~~~d~~VlElSSf  162 (438)
T PRK03806         86 ADAGVEIVGDIELFCREAQ-APIVAITGSNGKSTVTTLVGEMAKAAGVNV-GVGGNIGLPA-LMLLDQDCELYVLELSSF  162 (438)
T ss_pred             HHCCCCEEEHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCH-HHHHCCCCCEEEEECCCC
T ss_conf             9879947769999722279-988999489984899999999998659975-6771577527-775137675799832453


Q ss_pred             C-CHHHHCCCCCEEEEEEECCCHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             1-0122118553034222022011000-2556666430133333322222223465013454320011123333333222
Q gi|254781096|r  167 D-GTFIRLPSDIVVVTNIDPEHLDYYG-DFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQA  244 (474)
Q Consensus       167 ~-~s~~~~~P~iaVitNI~~DHld~~~-s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~  244 (474)
T Consensus       163 QLe~~~~~~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~--~~~~~i~fg~~~-~  236 (438)
T PRK03806        163 QLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRG--ADERCVSFGVNM-G  236 (438)
T ss_pred             CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHH--CCCCEEEEECCC-C
T ss_conf             30023545763788635888788776545999999999886279---68999475187798640--356558982356-6


Q ss_pred             CEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             20221021125842013555113444442000023567654333221121001232100000013343100001582211
Q gi|254781096|r  245 DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTL  324 (474)
Q Consensus       245 d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~  324 (474)
T Consensus       237 ~~~~~~---~~~~~~~--~~~~~-----~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~  306 (438)
T PRK03806        237 DYHLNR---QQGETWL--RVKGE-----KVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQL  306 (438)
T ss_pred             CEEEEE---CCCCEEE--EECCE-----EEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf             436760---5773689--73780-----3540121266672049889999999998399989986552047999973389


Q ss_pred             ECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCC
Q ss_conf             014786047630-244554302223331013443210333036631478889999999861-899999086667764323
Q gi|254781096|r  325 VGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAGEKEIP  402 (474)
Q Consensus       325 v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~e~~~~  402 (474)
T Consensus       307 v~~~~gv~fiNDSKaTN~~a~~~Al~s~~--~~~~i~lI~GG--~~K~~d~-~~l~~~~~~~~~~~~~-----------~  370 (438)
T PRK03806        307 VLEHNGVRWINDSKATNVGSTEAALNGLH--VDGTLHLLLGG--DGKSADF-SPLARYLNGDNIRLYC-----------F  370 (438)
T ss_pred             EEEECCEEEEECCCCCCHHHHHHHHHHCC--CCCCEEEEECC--CCCCCCH-HHHHHHHHCCCEEEEE-----------E
T ss_conf             99979999998972158999999998262--03977999547--7555787-9999986126569999-----------7


Q ss_pred             CCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             89999999999963899899988989999999985589879999448
Q gi|254781096|r  403 GFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGA  449 (474)
Q Consensus       403 g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~Ga  449 (474)
T Consensus       371 G~~~~~~~~~~~----~~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa  413 (438)
T PRK03806        371 GRDGAQLAALRP----EVAQLTETMEQAMRLLAPRVQPGDMVLLSPA  413 (438)
T ss_pred             CCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             778899996412----2041540099999999986689998998974