HHsearch alignment for GI: 254781096 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=564.17 Aligned_cols=402 Identities=19% Similarity=0.272 Sum_probs=312.2
Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEEC-CCHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 607999461460878999999879869996078998899999889889967-9978868898999888989999889999
Q gi|254781096|r 8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIG-HKVENIDNAEILVLSTAIDKDNVECIAA 86 (474)
Q Consensus 8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g-~~~~~i~~~d~vV~spgi~~~~~~l~~a 86 (474)
T Consensus 7 k~v~V~GlG~sG~s~-~~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~~~~a 85 (438)
T PRK03806 7 KNVVIIGLGLTGLSC-VDFFLARGVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA 85 (438)
T ss_pred CEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 989999457888999-9999978996999989999005788645884665777966806799999899789989899999
Q ss_pred HHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 97799499538998864116851587045784047788886403444430575357333331001468542001102322
Q gi|254781096|r 87 RERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADES 166 (474)
Q Consensus 87 ~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~V~E~~e~ 166 (474)
T Consensus 86 ~~~~i~i~seiel~~~~~~-~~iIaVTGTnGKTTTt~li~~iL~~~g~~~-~~gGNiG~p~-~~~~~~~~d~~VlElSSf 162 (438)
T PRK03806 86 ADAGVEIVGDIELFCREAQ-APIVAITGSNGKSTVTTLVGEMAKAAGVNV-GVGGNIGLPA-LMLLDQDCELYVLELSSF 162 (438)
T ss_pred HHCCCCEEEHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCH-HHHHCCCCCEEEEECCCC
T ss_conf 9879947769999722279-988999489984899999999998659975-6771577527-775137675799832453
Q ss_pred C-CHHHHCCCCCEEEEEEECCCHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1-0122118553034222022011000-2556666430133333322222223465013454320011123333333222
Q gi|254781096|r 167 D-GTFIRLPSDIVVVTNIDPEHLDYYG-DFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQA 244 (474)
Q Consensus 167 ~-~s~~~~~P~iaVitNI~~DHld~~~-s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~ 244 (474)
T Consensus 163 QLe~~~~~~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~--~~~~~i~fg~~~-~ 236 (438)
T PRK03806 163 QLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRG--ADERCVSFGVNM-G 236 (438)
T ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHH--CCCCEEEEECCC-C
T ss_conf 30023545763788635888788776545999999999886279---68999475187798640--356558982356-6
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 20221021125842013555113444442000023567654333221121001232100000013343100001582211
Q gi|254781096|r 245 DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTL 324 (474)
Q Consensus 245 d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~ 324 (474)
T Consensus 237 ~~~~~~---~~~~~~~--~~~~~-----~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~ 306 (438)
T PRK03806 237 DYHLNR---QQGETWL--RVKGE-----KVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQL 306 (438)
T ss_pred CEEEEE---CCCCEEE--EECCE-----EEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 436760---5773689--73780-----3540121266672049889999999998399989986552047999973389
Q ss_pred ECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCC
Q ss_conf 014786047630-244554302223331013443210333036631478889999999861-899999086667764323
Q gi|254781096|r 325 VGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAGEKEIP 402 (474)
Q Consensus 325 v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~e~~~~ 402 (474)
T Consensus 307 v~~~~gv~fiNDSKaTN~~a~~~Al~s~~--~~~~i~lI~GG--~~K~~d~-~~l~~~~~~~~~~~~~-----------~ 370 (438)
T PRK03806 307 VLEHNGVRWINDSKATNVGSTEAALNGLH--VDGTLHLLLGG--DGKSADF-SPLARYLNGDNIRLYC-----------F 370 (438)
T ss_pred EEEECCEEEEECCCCCCHHHHHHHHHHCC--CCCCEEEEECC--CCCCCCH-HHHHHHHHCCCEEEEE-----------E
T ss_conf 99979999998972158999999998262--03977999547--7555787-9999986126569999-----------7
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999999999963899899988989999999985589879999448
Q gi|254781096|r 403 GFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGA 449 (474)
Q Consensus 403 g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~Ga 449 (474)
T Consensus 371 G~~~~~~~~~~~----~~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa 413 (438)
T PRK03806 371 GRDGAQLAALRP----EVAQLTETMEQAMRLLAPRVQPGDMVLLSPA 413 (438)
T ss_pred CCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 778899996412----2041540099999999986689998998974