HHsearch alignment for GI: 254781096 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=533.33 Aligned_cols=410 Identities=19% Similarity=0.253 Sum_probs=303.8
Q ss_pred CCHHHC--CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC---HHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCC
Q ss_conf 853127--60799946146087899999987986999607899---8899999889889967997886889899988898
Q gi|254781096|r 2 LNPQGM--GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG---PNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAI 76 (474)
Q Consensus 2 ~~~~~~--~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~---~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi 76 (474)
T Consensus 1 m~~~~~~gkkv~V~GlG~sG~aa-a~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi 79 (468)
T PRK04690 1 MRISQLEGKRVALWGWGREGRAA-YRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGI 79 (468)
T ss_pred CCHHHCCCCEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCC
T ss_conf 97644397979998347879999-99999669904999728832464667620457567467785576148899989957
Q ss_pred CCCCHHHHHHHHCCCCEEEHHHHHHHHHC-----CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99998899999779949953899886411-----6851587045784047788886403444430575357333331001
Q gi|254781096|r 77 DKDNVECIAARERNIPIIFRSEMLAGLMR-----CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA 151 (474)
Q Consensus 77 ~~~~~~l~~a~~~gi~i~~~~e~l~~~~~-----~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~ 151 (474)
T Consensus 80 ~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~-~~~~GNIG~P~~~~~ 158 (468)
T PRK04690 80 SPYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHR-TALVGNIGQPLLEVL 158 (468)
T ss_pred CCCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHH
T ss_conf 9868999999987994886899999875311256787899969985899999999999857998-289867764467653
Q ss_pred -CCCCCCCCHHHCCCCCCH-H--HHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -468542001102322101-2--211855303422202201100025566664301333333222222234650134543
Q gi|254781096|r 152 -RIGTSEWIVVEADESDGT-F--IRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLI 227 (474)
Q Consensus 152 -~~~~~~~~V~E~~e~~~s-~--~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~ 227 (474)
T Consensus 159 ~~~~~~d~~VlElSSfQLe~~~~~~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~-~~~vin~~D~~~~~~~ 237 (468)
T PRK04690 159 APQPAPAYWAIELSSYQTGDVGRSGARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRP-RIALLNAADPRLAALQ 237 (468)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCC-CEEEEECCCHHHHHHH
T ss_conf 247888579999432057654531478778753048887874608999999999999965799-7799978888999752
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 20011123333333222202210211258420135551134444420000235676543332211210012321000000
Q gi|254781096|r 228 ARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED 307 (474)
Q Consensus 228 ~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~ 307 (474)
T Consensus 238 --~~~~~v~~~~~~~~--~~~~-----~~-~----~~~~~----~~~~~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~ 299 (468)
T PRK04690 238 --LPDSEVRWFNHPDG--WHVR-----GD-V----VYRGE----QAIFDTANVPLPGRHNRGNLCAVLAALEALGLDAAA 299 (468)
T ss_pred --CCCCCEEEECCCCC--EEEC-----CC-E----EEECC----CCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf --57784699517775--3760-----66-7----88356----201111236777700487699999999983898899
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C
Q ss_conf 13343100001582211014786047630-244554302223331013443210333036631478889999999861-8
Q gi|254781096|r 308 VKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-A 385 (474)
Q Consensus 308 i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-a 385 (474)
T Consensus 300 I~~aL~sF~glpHRlE~v~~~~gv~fiNDSKATN~---~a~~~AL~~f~~~~iilI~G--G~~Kg~d-~~~l~~~~~~~~ 373 (468)
T PRK04690 300 LAPAAASFRPLPNRLQELGSVDGITYVNDSISTTP---HASLAALDCFAGRRVALLVG--GHDRGLD-WTDFAAHMAQQA 373 (468)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCH---HHHHHHHHHCCCCCEEEEEC--CCCCCCC-HHHHHHHHHHCC
T ss_conf 99987426799975279999899999737877898---99999997276685799973--6766778-799999986337
Q ss_pred C-EEEEECCCCCCCCCCCCCCHHHHHHHHHHC---CCCCEEEECCHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf 9-999908666776432389999999999963---89989998898999999998-5589879999448
Q gi|254781096|r 386 D-IVLISPVYSAGEKEIPGFSSPELVKNIKLQ---GHPQAYYMDSFDHLVSKILA-IAEPGDFIIFFGA 449 (474)
Q Consensus 386 d-~vil~~i~~~~e~~~~g~~~~~l~~~i~~~---~~~~~~~~~~~~eav~~~~~-~~~~gDvVL~~Ga 449 (474)
T Consensus 374 ~~~vi~-----------~G~~~~~i~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLSPa 431 (468)
T PRK04690 374 PLEIVT-----------MGANGPRIHALLAPLADAGRFGLHAADDLPHAMALARTALGAQGGVVLLSPG 431 (468)
T ss_pred CEEEEE-----------ECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 689999-----------7478899999975234456310254067999999999960589998997953