HHsearch alignment for GI: 254781096 and conserved domain: PRK04690

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=533.33  Aligned_cols=410  Identities=19%  Similarity=0.253  Sum_probs=303.8

Q ss_pred             CCHHHC--CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC---HHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCC
Q ss_conf             853127--60799946146087899999987986999607899---8899999889889967997886889899988898
Q gi|254781096|r    2 LNPQGM--GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG---PNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAI   76 (474)
Q Consensus         2 ~~~~~~--~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~---~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi   76 (474)
T Consensus         1 m~~~~~~gkkv~V~GlG~sG~aa-a~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi   79 (468)
T PRK04690          1 MRISQLEGKRVALWGWGREGRAA-YRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGI   79 (468)
T ss_pred             CCHHHCCCCEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCC
T ss_conf             97644397979998347879999-99999669904999728832464667620457567467785576148899989957


Q ss_pred             CCCCHHHHHHHHCCCCEEEHHHHHHHHHC-----CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99998899999779949953899886411-----6851587045784047788886403444430575357333331001
Q gi|254781096|r   77 DKDNVECIAARERNIPIIFRSEMLAGLMR-----CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA  151 (474)
Q Consensus        77 ~~~~~~l~~a~~~gi~i~~~~e~l~~~~~-----~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~  151 (474)
T Consensus        80 ~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~-~~~~GNIG~P~~~~~  158 (468)
T PRK04690         80 SPYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHR-TALVGNIGQPLLEVL  158 (468)
T ss_pred             CCCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHH
T ss_conf             9868999999987994886899999875311256787899969985899999999999857998-289867764467653


Q ss_pred             -CCCCCCCCHHHCCCCCCH-H--HHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             -468542001102322101-2--211855303422202201100025566664301333333222222234650134543
Q gi|254781096|r  152 -RIGTSEWIVVEADESDGT-F--IRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLI  227 (474)
Q Consensus       152 -~~~~~~~~V~E~~e~~~s-~--~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~  227 (474)
T Consensus       159 ~~~~~~d~~VlElSSfQLe~~~~~~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~-~~~vin~~D~~~~~~~  237 (468)
T PRK04690        159 APQPAPAYWAIELSSYQTGDVGRSGARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRP-RIALLNAADPRLAALQ  237 (468)
T ss_pred             CCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCC-CEEEEECCCHHHHHHH
T ss_conf             247888579999432057654531478778753048887874608999999999999965799-7799978888999752


Q ss_pred             HHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf             20011123333333222202210211258420135551134444420000235676543332211210012321000000
Q gi|254781096|r  228 ARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED  307 (474)
Q Consensus       228 ~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~  307 (474)
T Consensus       238 --~~~~~v~~~~~~~~--~~~~-----~~-~----~~~~~----~~~~~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~  299 (468)
T PRK04690        238 --LPDSEVRWFNHPDG--WHVR-----GD-V----VYRGE----QAIFDTANVPLPGRHNRGNLCAVLAALEALGLDAAA  299 (468)
T ss_pred             --CCCCCEEEECCCCC--EEEC-----CC-E----EEECC----CCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             --57784699517775--3760-----66-7----88356----201111236777700487699999999983898899


Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C
Q ss_conf             13343100001582211014786047630-244554302223331013443210333036631478889999999861-8
Q gi|254781096|r  308 VKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-A  385 (474)
Q Consensus       308 i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-a  385 (474)
T Consensus       300 I~~aL~sF~glpHRlE~v~~~~gv~fiNDSKATN~---~a~~~AL~~f~~~~iilI~G--G~~Kg~d-~~~l~~~~~~~~  373 (468)
T PRK04690        300 LAPAAASFRPLPNRLQELGSVDGITYVNDSISTTP---HASLAALDCFAGRRVALLVG--GHDRGLD-WTDFAAHMAQQA  373 (468)
T ss_pred             HHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCH---HHHHHHHHHCCCCCEEEEEC--CCCCCCC-HHHHHHHHHHCC
T ss_conf             99987426799975279999899999737877898---99999997276685799973--6766778-799999986337


Q ss_pred             C-EEEEECCCCCCCCCCCCCCHHHHHHHHHHC---CCCCEEEECCHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf             9-999908666776432389999999999963---89989998898999999998-5589879999448
Q gi|254781096|r  386 D-IVLISPVYSAGEKEIPGFSSPELVKNIKLQ---GHPQAYYMDSFDHLVSKILA-IAEPGDFIIFFGA  449 (474)
Q Consensus       386 d-~vil~~i~~~~e~~~~g~~~~~l~~~i~~~---~~~~~~~~~~~~eav~~~~~-~~~~gDvVL~~Ga  449 (474)
T Consensus       374 ~~~vi~-----------~G~~~~~i~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLSPa  431 (468)
T PRK04690        374 PLEIVT-----------MGANGPRIHALLAPLADAGRFGLHAADDLPHAMALARTALGAQGGVVLLSPG  431 (468)
T ss_pred             CEEEEE-----------ECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf             689999-----------7478899999975234456310254067999999999960589998997953