HHsearch alignment for GI: 254781096 and conserved domain: PRK11929

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00  E-value=0  Score=408.52  Aligned_cols=384  Identities=20%  Similarity=0.294  Sum_probs=292.8

Q ss_pred             CHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCC--EEEH---------------HHHHHHH---HC---CCCCEEEECC
Q ss_conf             978868898999888989-999889999977994--9953---------------8998864---11---6851587045
Q gi|254781096|r   60 KVENIDNAEILVLSTAID-KDNVECIAARERNIP--IIFR---------------SEMLAGL---MR---CRKSISVSGT  115 (474)
Q Consensus        60 ~~~~i~~~d~vV~spgi~-~~~~~l~~a~~~gi~--i~~~---------------~e~l~~~---~~---~~~~IaVTGT  115 (474)
T Consensus       520 DSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~~~~~~p~I~V~Dt~~AL~~lA~~~r~~~~~~vIgITGS  599 (953)
T PRK11929        520 DSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQVADVALPQLVLGDTLAALGRMATAWRSSFSLPVIAITGS  599 (953)
T ss_pred             ECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             37736889889997148777799999999869979999256666788979968989999999999997579978999678


Q ss_pred             CCCCHHHHHHHHHHCCC---CCCEEEEECCCCCCCCCCCCC----CCCCCCHHHCCCCC-CHHHH----CCCCCEEEEEE
Q ss_conf             78404778888640344---443057535733333100146----85420011023221-01221----18553034222
Q gi|254781096|r  116 HGKTTTTSLIAALLEQG---KFDPTVINGGIINSYGTNARI----GTSEWIVVEADESD-GTFIR----LPSDIVVVTNI  183 (474)
Q Consensus       116 nGKTTTt~ml~~il~~~---g~~~~~~~G~~~~~~~~~~~~----~~~~~~V~E~~e~~-~s~~~----~~P~iaVitNI  183 (474)
T Consensus       600 nGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~~i~~PdiaVITNI  679 (953)
T PRK11929        600 NGKTTTKEMIAAILAQWQGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLAAIAAPTVALVTNA  679 (953)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECC
T ss_conf             85078999999999851777843885567437866671787579963465787652896226998606258977887445


Q ss_pred             ECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCCEEEEEEEECCCCCEEE
Q ss_conf             022011000255666643013333332222222346501345432001112333333--322220221021125842013
Q gi|254781096|r  184 DPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR--HPQADIRYSNIRKYSGRSIFD  261 (474)
Q Consensus       184 ~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~--~~~~d~~~~~i~~~~~~~~f~  261 (474)
T Consensus       680 g~aHLe~fgs~e~Ia~aK~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~  759 (953)
T PRK11929        680 QREHQEFLHSVEAVARANGALINALPEDGIAVVNGDDPYAAIWAKLAGARRVLRFGLSLQPGLDVYAEDIVTQAAGTLCF  759 (953)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEE
T ss_conf             69987661899999999999983158797999938868899999984578759998525898768999989868964999


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCC
Q ss_conf             555113444442000023567654333221121001232100000013343100001582211014786047630-2445
Q gi|254781096|r  262 VSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHH  340 (474)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahn  340 (474)
T Consensus       760 ~~~~~~~-------~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~iIDDsYNAN  832 (953)
T PRK11929        760 VVTPAGS-------AYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQLSDGTVIIDDTYNAN  832 (953)
T ss_pred             EEECCCE-------EEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf             9978956-------999956897999999999999999939999999999866999999878999579979999784888


Q ss_pred             CCCCHHHHHHHHCCCC-CCCEEEEECCCCH-HHHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             5430222333101344-3210333036631-47888999999986--189999908666776432389999999999963
Q gi|254781096|r  341 PIEISSVLAAVRQICP-RKIIAIHQPHRYS-RLSTLFDQFSSCFG--DADIVLISPVYSAGEKEIPGFSSPELVKNIKLQ  416 (474)
Q Consensus       341 P~~i~atl~al~~~~~-~rii~i~~p~~~s-r~~~~~~e~~~~l~--~ad~vil~~i~~~~e~~~~g~~~~~l~~~i~~~  416 (474)
T Consensus       833 P~Sm~aAl~~L~~~~~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~v-----------G~~~~~~~~~~~--  899 (953)
T PRK11929        833 PDSMRAAIDVLARLPGPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITL-----------GEASRDAAHAFG--  899 (953)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-----------CHHHHHHHHHCC--
T ss_conf             9999999999852879986999848500245789999999999997599999998-----------657999986568--


Q ss_pred             CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf             89989998898999999998558987999944899889999999998741
Q gi|254781096|r  417 GHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELV  466 (474)
Q Consensus       417 ~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~~~~~~~~~~~~l~~~  466 (474)
T Consensus       900 -~~~~~~~~~~~~l~~~L~~~l~~~d~VLVKGSR~m~l--E~iV~~l~~~  946 (953)
T PRK11929        900 -KAARACFASVDEIIAALRGLLPSSDIVLIKGSRFMRL--ERVVTAFSTN  946 (953)
T ss_pred             -CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHHHCC
T ss_conf             -4657883999999999985589999999971560469--9999999729