HHsearch alignment for GI: 254781096 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=408.52 Aligned_cols=384 Identities=20% Similarity=0.294 Sum_probs=292.8
Q ss_pred CHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCC--EEEH---------------HHHHHHH---HC---CCCCEEEECC
Q ss_conf 978868898999888989-999889999977994--9953---------------8998864---11---6851587045
Q gi|254781096|r 60 KVENIDNAEILVLSTAID-KDNVECIAARERNIP--IIFR---------------SEMLAGL---MR---CRKSISVSGT 115 (474)
Q Consensus 60 ~~~~i~~~d~vV~spgi~-~~~~~l~~a~~~gi~--i~~~---------------~e~l~~~---~~---~~~~IaVTGT 115 (474)
T Consensus 520 DSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~~~~~~p~I~V~Dt~~AL~~lA~~~r~~~~~~vIgITGS 599 (953)
T PRK11929 520 DSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQVADVALPQLVLGDTLAALGRMATAWRSSFSLPVIAITGS 599 (953)
T ss_pred ECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 37736889889997148777799999999869979999256666788979968989999999999997579978999678
Q ss_pred CCCCHHHHHHHHHHCCC---CCCEEEEECCCCCCCCCCCCC----CCCCCCHHHCCCCC-CHHHH----CCCCCEEEEEE
Q ss_conf 78404778888640344---443057535733333100146----85420011023221-01221----18553034222
Q gi|254781096|r 116 HGKTTTTSLIAALLEQG---KFDPTVINGGIINSYGTNARI----GTSEWIVVEADESD-GTFIR----LPSDIVVVTNI 183 (474)
Q Consensus 116 nGKTTTt~ml~~il~~~---g~~~~~~~G~~~~~~~~~~~~----~~~~~~V~E~~e~~-~s~~~----~~P~iaVitNI 183 (474)
T Consensus 600 nGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~~i~~PdiaVITNI 679 (953)
T PRK11929 600 NGKTTTKEMIAAILAQWQGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLAAIAAPTVALVTNA 679 (953)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECC
T ss_conf 85078999999999851777843885567437866671787579963465787652896226998606258977887445
Q ss_pred ECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCCEEEEEEEECCCCCEEE
Q ss_conf 022011000255666643013333332222222346501345432001112333333--322220221021125842013
Q gi|254781096|r 184 DPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR--HPQADIRYSNIRKYSGRSIFD 261 (474)
Q Consensus 184 ~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~--~~~~d~~~~~i~~~~~~~~f~ 261 (474)
T Consensus 680 g~aHLe~fgs~e~Ia~aK~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~ 759 (953)
T PRK11929 680 QREHQEFLHSVEAVARANGALINALPEDGIAVVNGDDPYAAIWAKLAGARRVLRFGLSLQPGLDVYAEDIVTQAAGTLCF 759 (953)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEE
T ss_conf 69987661899999999999983158797999938868899999984578759998525898768999989868964999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCC
Q ss_conf 555113444442000023567654333221121001232100000013343100001582211014786047630-2445
Q gi|254781096|r 262 VSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHH 340 (474)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahn 340 (474)
T Consensus 760 ~~~~~~~-------~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~iIDDsYNAN 832 (953)
T PRK11929 760 VVTPAGS-------AYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQLSDGTVIIDDTYNAN 832 (953)
T ss_pred EEECCCE-------EEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 9978956-------999956897999999999999999939999999999866999999878999579979999784888
Q ss_pred CCCCHHHHHHHHCCCC-CCCEEEEECCCCH-HHHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 5430222333101344-3210333036631-47888999999986--189999908666776432389999999999963
Q gi|254781096|r 341 PIEISSVLAAVRQICP-RKIIAIHQPHRYS-RLSTLFDQFSSCFG--DADIVLISPVYSAGEKEIPGFSSPELVKNIKLQ 416 (474)
Q Consensus 341 P~~i~atl~al~~~~~-~rii~i~~p~~~s-r~~~~~~e~~~~l~--~ad~vil~~i~~~~e~~~~g~~~~~l~~~i~~~ 416 (474)
T Consensus 833 P~Sm~aAl~~L~~~~~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~v-----------G~~~~~~~~~~~-- 899 (953)
T PRK11929 833 PDSMRAAIDVLARLPGPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITL-----------GEASRDAAHAFG-- 899 (953)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-----------CHHHHHHHHHCC--
T ss_conf 9999999999852879986999848500245789999999999997599999998-----------657999986568--
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 89989998898999999998558987999944899889999999998741
Q gi|254781096|r 417 GHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELV 466 (474)
Q Consensus 417 ~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~~~~~~~~~~~~l~~~ 466 (474)
T Consensus 900 -~~~~~~~~~~~~l~~~L~~~l~~~d~VLVKGSR~m~l--E~iV~~l~~~ 946 (953)
T PRK11929 900 -KAARACFASVDEIIAALRGLLPSSDIVLIKGSRFMRL--ERVVTAFSTN 946 (953)
T ss_pred -CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHHHCC
T ss_conf -4657883999999999985589999999971560469--9999999729