HHsearch alignment for GI: 254781096 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=0 Score=356.03 Aligned_cols=406 Identities=17% Similarity=0.225 Sum_probs=289.5
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCHHHCC--CCCEEEECCCCC-CCCHHHHHHHHCCCC--EEEH---
Q ss_conf 99998798699960789988999998898899679978868--898999888989-999889999977994--9953---
Q gi|254781096|r 25 EVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENID--NAEILVLSTAID-KDNVECIAARERNIP--IIFR--- 96 (474)
Q Consensus 25 ~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~~~~~i~--~~d~vV~spgi~-~~~~~l~~a~~~gi~--i~~~--- 96 (474)
T Consensus 7 ~i~~~~g~~~~g~~~~~~~~I~-------~i~t--DSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~ 77 (824)
T PRK11930 7 ELIRVLGANRVGGKTEFDAFID-------QLLI--DSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPK 77 (824)
T ss_pred HHHHHHCCEEECCCCCCCCEEC-------EEEE--CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9998639788578888883236-------3993--588765799868999567888879999999988990999945665
Q ss_pred ----------------HHHH---HHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC--
Q ss_conf ----------------8998---86411---68515870457840477888864034444305753573333310014--
Q gi|254781096|r 97 ----------------SEML---AGLMR---CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR-- 152 (474)
Q Consensus 97 ----------------~e~l---~~~~~---~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~-- 152 (474)
T Consensus 78 ~~~~~~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~-~v~~T~gn~Nn~IGvPLTll 156 (824)
T PRK11930 78 DLMEKKPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDY-NIVRSPRSYNSQIGVPLSVW 156 (824)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CEECCCCCCCCCCCHHHHHH
T ss_conf 54557887789989899999999999997489989999499978999999999974578-68528876687425899986
Q ss_pred -C-CCCCCCHHHCCCCC-CHHHH----CCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -6-85420011023221-01221----18553034222022011000255666643013333332222222346501345
Q gi|254781096|r 153 -I-GTSEWIVVEADESD-GTFIR----LPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRS 225 (474)
Q Consensus 153 -~-~~~~~~V~E~~e~~-~s~~~----~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~ 225 (474)
T Consensus 157 ~l~~~~e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~---~~~i~n~d~~~~~~ 233 (824)
T PRK11930 157 QMNEEHELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDC---DVIIYNGDNEEISN 233 (824)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHH
T ss_conf 498458089999078981469999535279999990750987664589999999999976217---81799468578999
Q ss_pred HHHHCC-CCCCCCCCC-CCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 432001-112333333-322220221021125842013555113444442000023567654333221121001232100
Q gi|254781096|r 226 LIARIQ-NRKIITYGR-HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGL 303 (474)
Q Consensus 226 ~~~~~~-~~~v~~fg~-~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi 303 (474)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~lp~~G~h~v~NAlaA~ava~~lGv 306 (824)
T PRK11930 234 CIHKSNLTRREIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDR-------YFQIPFIDDASIENSIHCLAVALYLMY 306 (824)
T ss_pred HHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEE-------EEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9976336762899834786653466654305881699999689069-------999369988999999999999998399
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCC-CCCEEEEE----CCCCHHHHHHHHH
Q ss_conf 000013343100001582211014786047630-24455430222333101344-32103330----3663147888999
Q gi|254781096|r 304 SSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP-RKIIAIHQ----PHRYSRLSTLFDQ 377 (474)
Q Consensus 304 ~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~-~rii~i~~----p~~~sr~~~~~~e 377 (474)
T Consensus 307 ~~~~i~~~L~~~~p~~~Rlev~~g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~--~~~ly~~ 384 (824)
T PRK11930 307 SADQITKRFARLEPVEMRLEVKEGINNCTLINDSYNSDLASLDIALDFLERRKQSKKKTLILSDILQSGQS--PEELYRK 384 (824)
T ss_pred CHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC--CHHHHHH
T ss_conf 99999999841896545137999799809995666699899999999997403578569998774432876--0789999
Q ss_pred HHHHHH--HCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999986--189999908666776432389999999999963899899988989999999985589879999448998899
Q gi|254781096|r 378 FSSCFG--DADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQW 455 (474)
Q Consensus 378 ~~~~l~--~ad~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~~~~~ 455 (474)
T Consensus 385 Vg~l~~~~~i~~ligi-----------G---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~- 449 (824)
T PRK11930 385 VAQLISSAKINRVIGI-----------G---EEISSEAKKFEGIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQF- 449 (824)
T ss_pred HHHHHHHCCCCEEEEE-----------C---HHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCH-
T ss_conf 9999997688789981-----------8---899999986457765895689999742741136897799805545668-
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999874171
Q gi|254781096|r 456 AASLIGELELVTP 468 (474)
Q Consensus 456 ~~~~~~~l~~~~~ 468 (474)
T Consensus 450 -e~i~~~l~~~~h 461 (824)
T PRK11930 450 -EQISERLELKVH 461 (824)
T ss_pred -HHHHHHHHHCCC
T ss_conf -999999964558