BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] (474 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/474 (100%), Positives = 474/474 (100%) Query: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK 60 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK Sbjct: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK 60 Query: 61 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT 120 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT Sbjct: 61 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT 120 Query: 121 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV 180 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV Sbjct: 121 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV 180 Query: 181 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR Sbjct: 181 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240 Query: 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK 300 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK Sbjct: 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK 300 Query: 301 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII 360 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII Sbjct: 301 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII 360 Query: 361 AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ 420 AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ Sbjct: 361 AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ 420 Query: 421 AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM 474 AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM Sbjct: 421 AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM 474 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 47.8 bits (112), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 42/335 (12%) Query: 11 HFVGIGGIGMSGI--AEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAE 68 H + + G+G SG+ A L ++G V D H +K + +E ID E Sbjct: 9 HSIAVFGLGRSGLSAACALKDSGVHVIAWDD---------HPCAVKQAKDMGIEVIDFRE 59 Query: 69 I-------LVLS--TAIDKDNVE-CIA-ARERNIPIIFRSEMLAGLMRCRK----SISVS 113 I LVLS A+ +N C+ A + N+ II E+ R I+V+ Sbjct: 60 IPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVT 119 Query: 114 GTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR-IGTSEWIVVEADESDGTFI- 171 GT+GK++T +LI+ +L + +D + GG I N + + V+E Sbjct: 120 GTNGKSSTVALISHVLRKNGYDVQL--GGNIGLPILNLEYFSPNRFYVIECSSYQIELTP 177 Query: 172 RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ 231 + I V+ NI P+HLD + K + A++C++ + IA Sbjct: 178 TIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV---TMSKHAIICINDHQCEK-IAYDM 233 Query: 232 NRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNA 291 N + H + I +++ S I + ++ + T + VI D S +HNI N Sbjct: 234 N-----FIGHSISRISSQSLQSDSDLYIDESFLKCSATSE--VIFDFSQE-TKKHNIQNL 285 Query: 292 CASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVG 326 S V +LGL E++K+ L S G+ R + Sbjct: 286 VTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA 320 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 25/275 (9%) Query: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155 +A +R + +I +++G+ GKTTT ++ L K I G N G T AR+ Sbjct: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158 Query: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209 ++ + E S IR + +V V+T I P HL + I +A + + + Sbjct: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 Query: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266 G + D L A+ + + I ++G+ AD + ++ S +S +V +QG Sbjct: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 Query: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323 K + V+ IG H N ++ + L + K L+ F G +R+ Sbjct: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 Query: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPR 357 + D+ Y +P + + ++ + QI P Sbjct: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 275 IKDLSLPLIGEHNISNACASIAVAYKL-----------GLSSEDVKKGLA-SFSGIKRRF 322 I LS+P+ G ++ A +AVA +L + K+ L + S IK+ + Sbjct: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 Query: 323 TLVGVWND 330 +G +N+ Sbjct: 138 ACIGSYNN 145 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 27.3 bits (59), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%) Query: 205 IDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQ-ADIRYSNIRKYSGRSIFDVS 263 +DNIPF +++ ++AR +N +T HP + + + YS S Sbjct: 94 VDNIPFLYQSIIG-------EIVARCRN---LTMAVHPVFTKDKNCDWQLYSPESC---- 139 Query: 264 VQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFT 323 G K +++I+ L + E I I + +L L S+D ++ LAS +++ F Sbjct: 140 --GIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFC 197 Query: 324 -LVGV 327 L G+ Sbjct: 198 HLTGI 202 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 27/47 (57%) Query: 12 FVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIG 58 +G G+G S +A++L+ G I G +++++ K+ ++ +IG Sbjct: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIG 434 >gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 406 SPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451 +PE ++NI+ + A +DS ++ E DF++ FG N Sbjct: 16 TPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMEN 61 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 25.0 bits (53), Expect = 2.7, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 332 HVFDDYGHHPIEISSVLAAVRQICPRKII 360 H+F+D+G E +SV A R+ C ++++ Sbjct: 19 HLFNDFGFMVFEATSVCEA-REFCEKELL 46 >gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 213 FAVVCMDHPEVRSLIARIQNRKIITYGRHPQ 243 F+V C ++ +V L+AR NR I + H Q Sbjct: 202 FSVPCAEY-QVNPLLARAMNRIFILHADHEQ 231 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 28/189 (14%) Query: 280 LPLIGEHNISNACASIAVAYKLG--LSSEDVKKGLASFSGIKR--RFTLVGVWNDV---- 331 L L+GEH NA +I G L E + L S R + T + N + Sbjct: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHS 293 Query: 332 HVFDDYGHHPIEISSVLAAVRQICPRK---------IIAIHQPHRYSRLSTLFDQFSSCF 382 V+ D GH+P ++ L ++I K +I + + +Y R F + S Sbjct: 294 EVWIDGGHNP---NAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI- 349 Query: 383 GDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAE--P 440 ++ +S + E++ + L++ K G QA S +S++ I E P Sbjct: 350 ----VLSVSLICRGRERQSISITPKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELP 404 Query: 441 GDFIIFFGA 449 I+ G+ Sbjct: 405 PPLILIAGS 413 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,154 Number of Sequences: 1233 Number of extensions: 13651 Number of successful extensions: 52 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 12 length of query: 474 length of database: 328,796 effective HSP length: 77 effective length of query: 397 effective length of database: 233,855 effective search space: 92840435 effective search space used: 92840435 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)