HHsearch alignment for GI: 254781097 and conserved domain: COG1663
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].
Probab=95.96 E-value=0.039 Score=34.39 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=46.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH---HHHCCCCCHHHH
Q ss_conf 87885256207999999999659839999572376762444687516875256565331233211---100012110135
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNS---LVILWKAFIASL 86 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 86 (369)
T Consensus 56 tvGGt-GKTP~vi~la~~l~~rG~~~gvvSRGYgg~~~~~~~~~~~~~--~a~~~GDEPlLlA~~t~~pv~v~~~R~~~~ 132 (336)
T COG1663 56 TVGGT-GKTPVVIWLAEALQARGVRVGVVSRGYGGKLKVVPLVDNIHT--TAAEVGDEPLLLARRTGAPVAVSPDRKDAA 132 (336)
T ss_pred EECCC-CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC--CHHHCCCHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 77789-968899999999986697367980576888765410256767--867728468887553399689864298999
Q ss_pred HHHHH--CCCCEEEECCCC
Q ss_conf 55420--344424312653
Q gi|254781097|r 87 RLIKK--LKPNVVVGFGGY 103 (369)
Q Consensus 87 ~ii~~--~kPDvVi~tGGy 103 (369)
T Consensus 133 ~~l~~~~~~~diIi~DDG~ 151 (336)
T COG1663 133 KALLAAHLGCDIIVLDDGL 151 (336)
T ss_pred HHHHHHCCCCCEEEECCCC
T ss_conf 9998517898999976743