HHsearch alignment for GI: 254781097 and conserved domain: COG1663

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].
Probab=95.96  E-value=0.039  Score=34.39  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH---HHHCCCCCHHHH
Q ss_conf             87885256207999999999659839999572376762444687516875256565331233211---100012110135
Q gi|254781097|r   10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNS---LVILWKAFIASL   86 (369)
Q Consensus        10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~   86 (369)
T Consensus        56 tvGGt-GKTP~vi~la~~l~~rG~~~gvvSRGYgg~~~~~~~~~~~~~--~a~~~GDEPlLlA~~t~~pv~v~~~R~~~~  132 (336)
T COG1663          56 TVGGT-GKTPVVIWLAEALQARGVRVGVVSRGYGGKLKVVPLVDNIHT--TAAEVGDEPLLLARRTGAPVAVSPDRKDAA  132 (336)
T ss_pred             EECCC-CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC--CHHHCCCHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf             77789-968899999999986697367980576888765410256767--867728468887553399689864298999


Q ss_pred             HHHHH--CCCCEEEECCCC
Q ss_conf             55420--344424312653
Q gi|254781097|r   87 RLIKK--LKPNVVVGFGGY  103 (369)
Q Consensus        87 ~ii~~--~kPDvVi~tGGy  103 (369)
T Consensus       133 ~~l~~~~~~~diIi~DDG~  151 (336)
T COG1663         133 KALLAAHLGCDIIVLDDGL  151 (336)
T ss_pred             HHHHHHCCCCCEEEECCCC
T ss_conf             9998517898999976743