HHsearch alignment for GI: 254781097 and conserved domain: COG1817
>COG1817 Uncharacterized protein conserved in archaea [Function unknown].
Probab=99.26 E-value=1.1e-08 Score=80.30 Aligned_cols=323 Identities=19% Similarity=0.167 Sum_probs=168.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 69998788525620799999999965983999957237-67624446875168752565653312332111000121101
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
T Consensus 2 kVwiDI~n~-~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~--g~~tl~~Kl~--~~-~eR~~~ 75 (346)
T COG1817 2 KVWIDIGNP-PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKH--GGVTLKEKLL--ES-AERVYK 75 (346)
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCEEEECCC--CCCCHHHHHH--HH-HHHHHH
T ss_conf 379975896-10238999999998578499999851275889999839970764045--7744789999--99-999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC--CCCCC-CCCCCCCCEEE
Q ss_conf 3555420344424312653210247888623411012215320015677889999987413--43222-23556673253
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARG--LVSSQ-KKVLLRKIIVT 161 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~--~~~~~-~~~~~~k~~~~ 161 (369)
T Consensus 76 L~ki~~~~kpdv~i~~---~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~ 152 (346)
T COG1817 76 LSKIIAEFKPDVAIGK---HSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGADPNKIS 152 (346)
T ss_pred HHHHHHHCCCCEEEEC---CCCCHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHCCCCCCEE
T ss_conf 9998752298557522---7810556776528863896487547778630002442150643443577887088955211
Q ss_pred EC-------CCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCHHH-----HHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 04-------4432456543334433114478-14898630432221023-----33445443232024660677620255
Q gi|254781097|r 162 GN-------PIRSSLIKMKDIPYQSSDLDQP-FHLLVFGGSQGAKVFSD-----IVPKSIALIPEMQRKRLVIMQQVRED 228 (369)
Q Consensus 162 G~-------PvR~~~~~~~~~~~~~~~~~~~-~~ILv~GGS~Ga~~ln~-----~v~~~~~~l~~~~~~~~~v~~~~g~~ 228 (369)
T Consensus 153 ~~~giae~~~v~~--f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~i--pr~~ 225 (346)
T COG1817 153 GYNGIAELANVYG--FVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLI--PREK 225 (346)
T ss_pred CCCCEEEEEECCC--CCCCHHHHHHCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCC---EEEE--CCCH
T ss_conf 3566267731026--7988789987588879866999643445423433222566888999887572---8995--5755
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 16776532210011113454444514443004489972542023334552960487533552489899989999988988
Q gi|254781097|r 229 DKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGA 308 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a 308 (369)
T Consensus 226 ~~~eife~~~----n~i~pk~~vD~l~Llyya~lvig-~ggTMarEaAlLGtpaIs~-~pGk----ll~vdk~lie~G~~ 295 (346)
T COG1817 226 EQAEIFEGYR----NIIIPKKAVDTLSLLYYATLVIG-AGGTMAREAALLGTPAISC-YPGK----LLAVDKYLIEKGLL 295 (346)
T ss_pred HHHHHHHHHC----CCCCCCCCCCHHHHHHHHHEEEC-CCCHHHHHHHHHCCCEEEE-CCCC----CCCCCHHHHHCCCE
T ss_conf 6899874101----10588555227878865415641-7703788888728834785-3885----33223898866843
Q ss_pred EEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9980001998999999999861899999999999852783279999999999998
Q gi|254781097|r 309 KVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 309 ~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~ 363 (369)
T Consensus 296 ~~s~----~~~~~~~~a~~~l~~~~~-kK--~~~~k~--e~~~~~ii~~ve~~~e 341 (346)
T COG1817 296 YHST----DEIAIVEYAVRNLKYRRL-KK--TGVLKL--EDPTRLIIDVVEEMLE 341 (346)
T ss_pred EECC----CHHHHHHHHHHHHHCHHH-CC--CCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 4317----888999999998425000-23--344220--0379999999999864