HHsearch alignment for GI: 254781097 and conserved domain: PRK01021
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed.
Probab=99.78 E-value=5e-16 Score=131.60 Aligned_cols=327 Identities=12% Similarity=0.123 Sum_probs=193.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 76999878852562079999999996598399995723767624446875168752565653312332111000121101
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
T Consensus 227 ~~~FI~AGE~SGD~l-Ga~Li~~Lk~~~P~i~F~GVGGp~M~~eGl--~slf~me--~lsVMG~~EVL~~lp~L~~~~~~ 301 (607)
T PRK01021 227 TSCFLSAGEASGDTL-GGNLLKEIKALYPDIRCFGVGGPQMRQEGL--EPLFNME--EFQVSGFWEVLLSLFKLYYRYRK 301 (607)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHHHCCC--CCCCCHH--HCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 875799268625577-999999998549898899637799987688--6124467--71011489999889999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHC--CC--CCEEECCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCC--
Q ss_conf 3555420344424312653210247888623--41--101221532----0015677889999987413432222355--
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMIL--RI--PSMVHEQNV----IMGKANRLLSWGVQIIARGLVSSQKKVL-- 154 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l--~i--P~vihEqN~----v~G~~nk~l~~~a~~v~~~~~~~~~~~~-- 154 (369)
T Consensus 302 l~~~i~~~~PD~~I~I-D~PdFNlrlak~lkk~gi~ik~vhYVsPsVWAWr~~R~-k~i~~~vD~~l~lfPFE~~~~~~~ 379 (607)
T PRK01021 302 LYKTILKENPETVICI-DFPDFHFLLIKKLRKCGYKGKIIHYVCPSIWAWRPKRK-TILEKYLDLLLLILPFEQGLFKNS 379 (607)
T ss_pred HHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCHH-HHHHHHHHHHEECCCCCHHHHHCC
T ss_conf 9999986199999995-89987889999999728999868997883688662179-999998867305267788999507
Q ss_pred CCCCEEEECCCCHHHHHHHHHHH--HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEECCCCH
Q ss_conf 66732530444324565433344--33114478148986304322210233344544323--202466067762025516
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKDIPY--QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIP--EMQRKRLVIMQQVREDDK 230 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~~~~--~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~--~~~~~~~~v~~~~g~~~~ 230 (369)
T Consensus 380 g~~~~yVGHPl~e~i~~~~~~~~~r~~l~~~~k~IIALLPGSR~SEI-~RlLPI~~~ai~~~~l~~~~~~lV~~a~p~~~ 458 (607)
T PRK01021 380 PLRTVYLGHPLVETISNFQPCASWKEQLLPSDKPIVAAFPGSRRGDI-LRNLTIQVQAFLASSLAQTHQLLVSSANPKYD 458 (607)
T ss_pred CCCCEEECCCCHHHCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 99837978960120223477456998617788988999089978999-98749999999987244676499956876688
Q ss_pred HHHHHHHHHCC-CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC----
Q ss_conf 77653221001-1113454444514443004489972542023334552960487533552489899989999988----
Q gi|254781097|r 231 EKVQKQYDELG-CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG---- 305 (369)
Q Consensus 231 ~~~~~~~~~~~-~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~---- 305 (369)
T Consensus 459 ~~i~e~l~~~~~~~~~II~-~~~kyeam~aSDaALaASGTATL-E~ALagvPmVVa-YKl--npLTyfIAK~LvKI~lp~ 533 (607)
T PRK01021 459 HLILDVLQQEGCLHSKIVP-SQFRYELMRECDCALAKCGTIVL-ETALNQTPTIVT-CQL--RPFDTFLAKYIFKILLPA 533 (607)
T ss_pred HHHHHHHHHCCCCCCEECC-CHHHHHHHHHCCEEEECCCHHHH-HHHHHCCCEEEE-EEC--CHHHHHHHHHHHHHCCCC
T ss_conf 9999999864898845717-32589999858899888778999-999838898999-967--827999999999725751
Q ss_pred -C-----CEE-E----E-EHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf -9-----889-9----8-0001998999999999861899999999999852
Q gi|254781097|r 306 -G-----GAK-V----I-TENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK 345 (369)
Q Consensus 306 -G-----~a~-~----i-~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~ 345 (369)
T Consensus 534 vsLPNILagr~VVPElI~gQ~D~~PE~iAaAl-~lL~~p~~~ekq~~~c~~~ 584 (607)
T PRK01021 534 YSLPNIILGSVIFPEFIGGKKDFHPEEVAAAL-DILKTSQSKEKQKEACRDL 584 (607)
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_conf 21130116998666636776658989999999-9871915679999999999