HHsearch alignment for GI: 254781097 and conserved domain: PRK10422
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=98.08 E-value=0.0014 Score=44.52 Aligned_cols=265 Identities=12% Similarity=0.115 Sum_probs=117.0
Q ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9988-769998788525620799999999965983--9999572376762444687516875256565331233211100
Q gi|254781097|r 1 MSEN-NVILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 1 M~~~-~~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
T Consensus 1 m~~~~kkILIir~~~iGD~il~tP~i~~Lk~~~P~a~I~~l~~~~~~~ll~~~P~id--~i~~~~~k~~~~~~~~----- 73 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEIN--ALYGIKNKKAGASEKI----- 73 (352)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCC--EEEEECCCCCCHHHHH-----
T ss_conf 998997799975886049999999999999988998899997804799983399962--7988667554456779-----
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-ECCCCCCHH-HHHHHH--------HHHHHHHCCCC
Q ss_conf 01211013555420344424312653210247888623411012-215320015-677889--------99998741343
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV-HEQNVIMGK-ANRLLS--------WGVQIIARGLV 147 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi-hEqN~v~G~-~nk~l~--------~~a~~v~~~~~ 147 (369)
T Consensus 74 --~~~~~l~~~Lr~~~yD~vi~l~~--~~~~~~l~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~h~v~~~l-~ll 148 (352)
T PRK10422 74 --KNFFSLIKVLRANKYDLIVNLTD--QWMVALLVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGHVVESNL-SVL 148 (352)
T ss_pred --HHHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH-HHH
T ss_conf --99999999985548877886676--6499999998389858656665210145565531468875415999999-998
Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCH-HHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 22223556673253044432456543334433114478148986304322-210-2333445443232024660677620
Q gi|254781097|r 148 SSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVF-SDIVPKSIALIPEMQRKRLVIMQQV 225 (369)
Q Consensus 148 ~~~~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~l-n~~v~~~~~~l~~~~~~~~~v~~~~ 225 (369)
T Consensus 149 ~~-l~~~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~-ivi~pga~~~~K~Wp~e~~a~l~~~L~~~---g~~vvl~g 222 (352)
T PRK10422 149 TP-LGLSSLVKETT-MSYRPESWKRMRRQLDHLGVTQNY-VVIQPTARQIFKCWDNDKFSAVIDALQAR---GYEVVLTS 222 (352)
T ss_pred HH-CCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEC
T ss_conf 64-69986675556-678878999999876744888987-99967899856779999999999999847---99199972
Q ss_pred CCC--CHHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 255--167765322100111134544-----445144430044899725420233345529604875
Q gi|254781097|r 226 RED--DKEKVQKQYDELGCKATLACF-----FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 226 g~~--~~~~~~~~~~~~~~~~~v~~f-----~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
T Consensus 223 gp~~~e~~~~~~i~~~~-~~~~v~~l~G~tsL~el~ali~~a~l~I~n-DSGpmHlAaAlg~P~Val 287 (352)
T PRK10422 223 GPAKDDLACVNEIAQGC-QTPPVTALAGKTTFPELGALIDHAQLFIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCEECCCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf 89889999999999746-798704235788899999999817875605-981899999829998999