HHsearch alignment for GI: 254781097 and conserved domain: TIGR03492

>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.64  E-value=7e-14  Score=116.57  Aligned_cols=336  Identities=17%  Similarity=0.188  Sum_probs=182.3

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCEEEEE----ECHHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf             9987885256207999999999659839999----57237676244468-75168752565653312332111000-121
Q gi|254781097|r    8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI----TDRRARSFITDFPA-DSIYEIVSSQVRFSNPFVFWNSLVIL-WKA   81 (369)
Q Consensus         8 li~~gGTGGHi~palala~~L~~~g~~v~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~   81 (369)
T Consensus         2 ~lSNGh--GEDl~a~~i~~~L~~~~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~   79 (396)
T TIGR03492         2 FLSNGH--GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL   79 (396)
T ss_pred             CCCCCC--HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             406763--588999999999996299996698513478499997899487466435774622436778999997036999


Q ss_pred             CHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEC---CCCC----CHHH--H--------------HHHH
Q ss_conf             101355542--034442431265321024788862341101221---5320----0156--7--------------7889
Q gi|254781097|r   82 FIASLRLIK--KLKPNVVVGFGGYHSISPLLAGMILRIPSMVHE---QNVI----MGKA--N--------------RLLS  136 (369)
Q Consensus        82 ~~~~~~ii~--~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihE---qN~v----~G~~--n--------------k~l~  136 (369)
T Consensus        80 ~~~q~~~~~~~~~~~~~ilavGD~--~pl-~~A~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pwe~~lm  156 (396)
T TIGR03492        80 TLGQWRALRKWAKKGDLIVAVGDI--VPL-LFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLM  156 (396)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCH--HHH-HHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHHHHHHH
T ss_conf             999999999854458879996671--888-99998189816997045323660687753012332155178167799974


Q ss_pred             --HHHHHHHCCCCCCCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH--HHHHHHHHH
Q ss_conf             --999987413432222355--66732530444324565433344331144781489863043222102--333445443
Q gi|254781097|r  137 --WGVQIIARGLVSSQKKVL--LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS--DIVPKSIAL  210 (369)
Q Consensus       137 --~~a~~v~~~~~~~~~~~~--~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln--~~v~~~~~~  210 (369)
T Consensus       157 ~~~rc~~Vf~RD~lTA~~L~~~gi~a~f~GnPmMD~l~~~----~~~~~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~  232 (396)
T TIGR03492       157 RSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPP----ERKPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEA  232 (396)
T ss_pred             CCCCCCEEECCCHHHHHHHHHCCCCEEEECCCHHCCCCCC----CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             0966529950558879999977996496087341378888----876678878679995898859999879999999996


Q ss_pred             HHHHCCCCCEEEE-EECCCCHHHHHHHHHHCC----------------CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHH
Q ss_conf             2320246606776-202551677653221001----------------11134544445144430044899725420233
Q gi|254781097|r  211 IPEMQRKRLVIMQ-QVREDDKEKVQKQYDELG----------------CKATLACFFKDIERYIVEANLLICRSGALTVS  273 (369)
Q Consensus       211 l~~~~~~~~~v~~-~~g~~~~~~~~~~~~~~~----------------~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~  273 (369)
T Consensus       233 l~~~~--~~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~ia~AGTAte-  309 (396)
T TIGR03492       233 LPDSQ--PFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTATE-  309 (396)
T ss_pred             HCCCC--CEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHHHCCCCHHH-
T ss_conf             34148--869999868999989999999965970057865420001048768999738489999855114443770999-


Q ss_pred             HHHHHCCCEEEEECCCCCCCHHHH--HHHHHHH-CCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH-HHCCCCH
Q ss_conf             345529604875335524898999--8999998-89889980001998999999999861899999999999-8527832
Q gi|254781097|r  274 EIAVIGRPAILVPYPHSVDQDQLH--NAYYLQE-GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQV-SMKGKPQ  349 (369)
Q Consensus       274 E~~~~g~P~IlIP~p~a~~~hQ~~--NA~~l~~-~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~-~~~~~~~  349 (369)
T Consensus       310 Q~vgLG~Pvv~l~g~----GPQfT~~fA~~Q~RLLG~sv~~~--~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~RlG~~G  383 (396)
T TIGR03492       310 QAVGLGKPVIQLPGK----GPQFTYGFAEAQSRLLGGSVFLA--SKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPG  383 (396)
T ss_pred             HHHHCCCCEEEECCC----CCHHHHHHHHHHHHHCCCEEEEC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf             998718987997278----72777999999998627533526--899999999999985499999999999998558865


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             799999999999
Q gi|254781097|r  350 AVLMLSDLVEKL  361 (369)
Q Consensus       350 aa~~i~~~i~~l  361 (369)
T Consensus       384 as~RiA~~il~~  395 (396)
T TIGR03492       384 ASARIAESILKQ  395 (396)
T ss_pred             HHHHHHHHHHHH
T ss_conf             889999999951