HHsearch alignment for GI: 254781097 and conserved domain: TIGR03492
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.64 E-value=7e-14 Score=116.57 Aligned_cols=336 Identities=17% Similarity=0.188 Sum_probs=182.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEE----ECHHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf 9987885256207999999999659839999----57237676244468-75168752565653312332111000-121
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI----TDRRARSFITDFPA-DSIYEIVSSQVRFSNPFVFWNSLVIL-WKA 81 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 81 (369)
T Consensus 2 ~lSNGh--GEDl~a~~i~~~L~~~~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~ 79 (396)
T TIGR03492 2 FLSNGH--GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCCCCC--HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 406763--588999999999996299996698513478499997899487466435774622436778999997036999
Q ss_pred CHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEC---CCCC----CHHH--H--------------HHHH
Q ss_conf 101355542--034442431265321024788862341101221---5320----0156--7--------------7889
Q gi|254781097|r 82 FIASLRLIK--KLKPNVVVGFGGYHSISPLLAGMILRIPSMVHE---QNVI----MGKA--N--------------RLLS 136 (369)
Q Consensus 82 ~~~~~~ii~--~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihE---qN~v----~G~~--n--------------k~l~ 136 (369)
T Consensus 80 ~~~q~~~~~~~~~~~~~ilavGD~--~pl-~~A~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pwe~~lm 156 (396)
T TIGR03492 80 TLGQWRALRKWAKKGDLIVAVGDI--VPL-LFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLM 156 (396)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCH--HHH-HHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHHHHHHH
T ss_conf 999999999854458879996671--888-99998189816997045323660687753012332155178167799974
Q ss_pred --HHHHHHHCCCCCCCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH--HHHHHHHHH
Q ss_conf --999987413432222355--66732530444324565433344331144781489863043222102--333445443
Q gi|254781097|r 137 --WGVQIIARGLVSSQKKVL--LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS--DIVPKSIAL 210 (369)
Q Consensus 137 --~~a~~v~~~~~~~~~~~~--~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln--~~v~~~~~~ 210 (369)
T Consensus 157 ~~~rc~~Vf~RD~lTA~~L~~~gi~a~f~GnPmMD~l~~~----~~~~~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~ 232 (396)
T TIGR03492 157 RSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPP----ERKPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEA 232 (396)
T ss_pred CCCCCCEEECCCHHHHHHHHHCCCCEEEECCCHHCCCCCC----CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 0966529950558879999977996496087341378888----876678878679995898859999879999999996
Q ss_pred HHHHCCCCCEEEE-EECCCCHHHHHHHHHHCC----------------CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHH
Q ss_conf 2320246606776-202551677653221001----------------11134544445144430044899725420233
Q gi|254781097|r 211 IPEMQRKRLVIMQ-QVREDDKEKVQKQYDELG----------------CKATLACFFKDIERYIVEANLLICRSGALTVS 273 (369)
Q Consensus 211 l~~~~~~~~~v~~-~~g~~~~~~~~~~~~~~~----------------~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~ 273 (369)
T Consensus 233 l~~~~--~~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~ia~AGTAte- 309 (396)
T TIGR03492 233 LPDSQ--PFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTATE- 309 (396)
T ss_pred HCCCC--CEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHHHCCCCHHH-
T ss_conf 34148--869999868999989999999965970057865420001048768999738489999855114443770999-
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHH--HHHHHHH-CCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH-HHCCCCH
Q ss_conf 345529604875335524898999--8999998-89889980001998999999999861899999999999-8527832
Q gi|254781097|r 274 EIAVIGRPAILVPYPHSVDQDQLH--NAYYLQE-GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQV-SMKGKPQ 349 (369)
Q Consensus 274 E~~~~g~P~IlIP~p~a~~~hQ~~--NA~~l~~-~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~-~~~~~~~ 349 (369)
T Consensus 310 Q~vgLG~Pvv~l~g~----GPQfT~~fA~~Q~RLLG~sv~~~--~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~RlG~~G 383 (396)
T TIGR03492 310 QAVGLGKPVIQLPGK----GPQFTYGFAEAQSRLLGGSVFLA--SKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPG 383 (396)
T ss_pred HHHHCCCCEEEECCC----CCHHHHHHHHHHHHHCCCEEEEC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 998718987997278----72777999999998627533526--899999999999985499999999999998558865
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999999
Q gi|254781097|r 350 AVLMLSDLVEKL 361 (369)
Q Consensus 350 aa~~i~~~i~~l 361 (369)
T Consensus 384 as~RiA~~il~~ 395 (396)
T TIGR03492 384 ASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHHHH
T ss_conf 889999999951