HHsearch alignment for GI: 254781097 and conserved domain: TIGR03590
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.91 E-value=2.8e-23 Score=182.29 Aligned_cols=261 Identities=17% Similarity=0.205 Sum_probs=155.4
Q ss_pred EEEE-E-CC-CCH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCC--CCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 6999-8-78-852-5620799999999965983999957237676244--468751687525656533123321110001
Q gi|254781097|r 6 VILL-V-AG-GTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITD--FPADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 6 ~ili-~-~g-GTG-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
T Consensus 2 kI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 67 (280)
T TIGR03590 2 RILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSSWQ-------------- 67 (280)
T ss_pred EEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCC--------------
T ss_conf 799999678991320899999999999988994999992795889999997598179816756520--------------
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEE-ECCCCCCHHHHHHHHHHHHHHHCCCCC----CC-CC
Q ss_conf 211013555420344424312653210247-888623411012-215320015677889999987413432----22-23
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMV-HEQNVIMGKANRLLSWGVQIIARGLVS----SQ-KK 152 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vi-hEqN~v~G~~nk~l~~~a~~v~~~~~~----~~-~~ 152 (369)
T Consensus 68 ~~~~~~~~~~~~~~~d~vI-iD~y~~~~~~~~~lk~~~~~~i~iDD~~~~--------~~~~d~vin~~~~~~~~~y~~~ 138 (280)
T TIGR03590 68 DDALELINLLEKEKFDILI-VDHYALDADWEKLIKHFGRKLLVIDDLADR--------PHDCDLLLDQNPGADALDYQGL 138 (280)
T ss_pred CCHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHCCEEEEEECCCCC--------CCCCCEEECCCCCCCHHHHCCC
T ss_conf 1299999999737979999-925999979999999839839999367654--------6561425414544475663644
Q ss_pred CCCCCCEEEEC---CCCHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEECC
Q ss_conf 55667325304---443245654333443311447814898-630432221023334454432320-2466067762025
Q gi|254781097|r 153 VLLRKIIVTGN---PIRSSLIKMKDIPYQSSDLDQPFHLLV-FGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVRE 227 (369)
Q Consensus 153 ~~~~k~~~~G~---PvR~~~~~~~~~~~~~~~~~~~~~ILv-~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g~ 227 (369)
T Consensus 139 ~~~~~~~l~G~~Y~~lr~~F~~~~~~~~~~---~~~~~Ili~~GGsD~~-~lt~---~il~~l~~~~~~~~i~vvig~~~ 211 (280)
T TIGR03590 139 VPANCRLLLGPSYALLREEFYQLRTANKRR---KPLRRVLVSFGGADPD-NLTL---KLLSALAESQINISITLVTGSSN 211 (280)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCC---CCCCEEEEEECCCCHH-HHHH---HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 886766986575343578887630322103---6553289997787700-0899---99999985166856799986798
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 516776532210011113454444514443004489972542023334552960487533552489899989999
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYL 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l 302 (369)
T Consensus 212 ~~~~~i~~~~~~-~~~~~~~~~~~~m~~~m~~aDlaI~-agG~t~~El~~~gvP~i~i~~---a-dNQ~~~a~~l 280 (280)
T TIGR03590 212 PNLDELKKFAKE-YPNIILFIDVENMAELMNEADLAIG-AAGSTSWERCCLGLPSLSIVL---A-ENQQSNSQQL 280 (280)
T ss_pred CCHHHHHHHHHH-CCCEEEECCHHHHHHHHHHCCEEEE-CCCHHHHHHHHHCCCEEEEEE---C-CCHHHHHHHC
T ss_conf 766999999972-8996996598899999997799998-596589999994999899997---0-2569998509