HHsearch alignment for GI: 254781097 and conserved domain: cd01976
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=91.65 E-value=1.1 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=17.9
Q ss_pred HCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 0044899725420233345529604875
Q gi|254781097|r 258 VEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 258 ~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
T Consensus 368 ~~pDl~l~--g~ker~ia~K~gIP~~~~ 393 (421)
T cd01976 368 LKPDLIGS--GIKEKYVFQKMGIPFRQM 393 (421)
T ss_pred CCCCEEEE--CCCCCHHEEECCCCEEEC
T ss_conf 39999995--476202004448885766