HHsearch alignment for GI: 254781097 and conserved domain: cd03789

>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.66  E-value=0.0069  Score=39.68  Aligned_cols=213  Identities=12%  Similarity=0.162  Sum_probs=107.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHCCCCCCC-EEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             699987885256207999999999659--8399995723767624446875-1687525656533123321110001211
Q gi|254781097|r    6 VILLVAGGTGGHVFPAVALSHELKNRG--YAVYLITDRRARSFITDFPADS-IYEIVSSQVRFSNPFVFWNSLVILWKAF   82 (369)
Q Consensus         6 ~ili~~gGTGGHi~palala~~L~~~g--~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (369)
T Consensus         1 kILii~~~~iGD~i~~~p~i~~lk~~~P~~~I~~l~~~~~~~l~~~~p~id~vi~~~~~~-----~~~~-------~~~~   68 (279)
T cd03789           1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLG-------LGAR   68 (279)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCC-----CCCC-------HHHH
T ss_conf             989994785039999999999999988799899998936899996399857999953543-----3347-------8999


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf             01355542034442431265321024788862341101221532001567788999998741343222235566732530
Q gi|254781097|r   83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTG  162 (369)
Q Consensus        83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G  162 (369)
T Consensus        69 ~~~~~~l~~~~~D~~i~~~~--~~~~~~~~~~~~~~~~~g-----------------------~~~~~~-----------  112 (279)
T cd03789          69 RRLARALRRRRYDLAIDLQG--SLRSALLPFLAGAPRRIG-----------------------FDGERR-----------  112 (279)
T ss_pred             HHHHHHHHHCCCCEEEECCC--CHHHHHHHHHCCCCEEEE-----------------------CCCHHH-----------
T ss_conf             99999987649989998985--458999999849997996-----------------------781342-----------


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-HH-HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             4443245654333443311447814898630432221-02-333445443232024660677620255167765322100
Q gi|254781097|r  163 NPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKV-FS-DIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL  240 (369)
Q Consensus       163 ~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~-ln-~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~  240 (369)
T Consensus       113 ----~----------~~~~~~~~~~i~i~~ga~~~~K~wp~~~~~~l~~~l~~---~~~~ivl~g~~~e~~~~~~i~~~~  175 (279)
T cd03789         113 ----R----------GLLTDVVKPVVVLPPGASGPAKRWPAERFAALADRLLA---RGARVVLTGGPAERELAEEIAAAL  175 (279)
T ss_pred             ----C----------CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf             ----0----------33114799989995898973457989999999999985---899599934866899999999967


Q ss_pred             CCCCCCCCC-----CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf             111134544-----445144430044899725420233345529604875
Q gi|254781097|r  241 GCKATLACF-----FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV  285 (369)
Q Consensus       241 ~~~~~v~~f-----~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI  285 (369)
T Consensus       176 ~-~~~~~~l~g~~sl~el~~li~~a~l~I~~-DTg~~HlAaa~~~p~i~i  223 (279)
T cd03789         176 G-GPRVVNLAGKTSLRELAALLARADLVVTN-DSGPMHLAAALGTPTVAL  223 (279)
T ss_pred             C-CCCEEECCCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf             9-99758368999999999999846833756-877999999849998999