HHsearch alignment for GI: 254781097 and conserved domain: cd03789
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.66 E-value=0.0069 Score=39.68 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHCCCCCCC-EEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 699987885256207999999999659--8399995723767624446875-1687525656533123321110001211
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRG--YAVYLITDRRARSFITDFPADS-IYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g--~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
T Consensus 1 kILii~~~~iGD~i~~~p~i~~lk~~~P~~~I~~l~~~~~~~l~~~~p~id~vi~~~~~~-----~~~~-------~~~~ 68 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLG-------LGAR 68 (279)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCC-----CCCC-------HHHH
T ss_conf 989994785039999999999999988799899998936899996399857999953543-----3347-------8999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 01355542034442431265321024788862341101221532001567788999998741343222235566732530
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTG 162 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G 162 (369)
T Consensus 69 ~~~~~~l~~~~~D~~i~~~~--~~~~~~~~~~~~~~~~~g-----------------------~~~~~~----------- 112 (279)
T cd03789 69 RRLARALRRRRYDLAIDLQG--SLRSALLPFLAGAPRRIG-----------------------FDGERR----------- 112 (279)
T ss_pred HHHHHHHHHCCCCEEEECCC--CHHHHHHHHHCCCCEEEE-----------------------CCCHHH-----------
T ss_conf 99999987649989998985--458999999849997996-----------------------781342-----------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-HH-HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf 4443245654333443311447814898630432221-02-333445443232024660677620255167765322100
Q gi|254781097|r 163 NPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKV-FS-DIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL 240 (369)
Q Consensus 163 ~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~-ln-~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 240 (369)
T Consensus 113 ----~----------~~~~~~~~~~i~i~~ga~~~~K~wp~~~~~~l~~~l~~---~~~~ivl~g~~~e~~~~~~i~~~~ 175 (279)
T cd03789 113 ----R----------GLLTDVVKPVVVLPPGASGPAKRWPAERFAALADRLLA---RGARVVLTGGPAERELAEEIAAAL 175 (279)
T ss_pred ----C----------CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf ----0----------33114799989995898973457989999999999985---899599934866899999999967
Q ss_pred CCCCCCCCC-----CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 111134544-----445144430044899725420233345529604875
Q gi|254781097|r 241 GCKATLACF-----FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 241 ~~~~~v~~f-----~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
T Consensus 176 ~-~~~~~~l~g~~sl~el~~li~~a~l~I~~-DTg~~HlAaa~~~p~i~i 223 (279)
T cd03789 176 G-GPRVVNLAGKTSLRELAALLARADLVVTN-DSGPMHLAAALGTPTVAL 223 (279)
T ss_pred C-CCCEEECCCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf 9-99758368999999999999846833756-877999999849998999