Query gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 369
No_of_seqs 154 out of 3410
Neff 7.7
Searched_HMMs 39220
Date Mon May 30 05:19:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781097.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00726 murG N-acetylglucosam 100.0 0 0 660.4 30.0 357 4-363 1-358 (359)
2 cd03785 GT1_MurG MurG is an N- 100.0 0 0 632.1 26.2 349 6-357 1-350 (350)
3 PRK12446 N-acetylglucosaminyl 100.0 0 0 628.5 28.6 345 5-360 2-351 (352)
4 COG0707 MurG UDP-N-acetylgluco 100.0 0 0 590.8 27.4 355 5-364 1-357 (357)
5 TIGR01133 murG undecaprenyldip 100.0 0 0 590.5 22.5 354 1-358 2-368 (368)
6 PRK13609 diacylglycerol glucos 100.0 0 0 368.8 18.5 337 1-360 1-367 (388)
7 PRK13608 diacylglycerol glucos 100.0 0 0 355.3 17.2 343 1-367 2-374 (391)
8 pfam04101 Glyco_tran_28_C Glyc 100.0 1.8E-39 4.6E-44 295.5 12.2 167 187-354 1-167 (167)
9 cd03784 GT1_Gtf_like This fami 100.0 6.5E-33 1.7E-37 249.6 24.4 338 6-361 2-401 (401)
10 TIGR01426 MGT glycosyltransfer 100.0 7.2E-31 1.8E-35 235.3 16.2 325 15-362 6-427 (429)
11 pfam03033 Glyco_transf_28 Glyc 100.0 3.9E-31 9.9E-36 237.2 8.9 135 7-143 1-135 (136)
12 COG1819 Glycosyl transferases, 100.0 1.6E-26 4E-31 205.0 22.4 341 4-367 1-404 (406)
13 PRK00025 lpxB lipid-A-disaccha 99.9 6.2E-22 1.6E-26 172.9 24.0 349 4-366 1-382 (382)
14 TIGR03590 PseG pseudaminic aci 99.9 2.8E-23 7.1E-28 182.3 16.3 261 6-302 2-280 (280)
15 COG3980 spsG Spore coat polysa 99.9 2.1E-21 5.4E-26 169.1 18.3 301 6-355 3-317 (318)
16 COG4671 Predicted glycosyl tra 99.9 9E-21 2.3E-25 164.8 16.0 338 1-361 6-388 (400)
17 pfam02684 LpxB Lipid-A-disacch 99.9 3.6E-19 9.2E-24 153.5 21.9 337 7-356 1-371 (373)
18 PRK10307 predicted glycosyl tr 99.9 3E-18 7.6E-23 147.1 24.7 343 6-362 2-411 (415)
19 cd03814 GT1_like_2 This family 99.9 7E-19 1.8E-23 151.5 21.5 329 6-361 1-362 (364)
20 cd03808 GT1_cap1E_like This fa 99.8 2.4E-19 6.2E-24 154.7 18.1 329 6-359 1-358 (359)
21 pfam00201 UDPGT UDP-glucoronos 99.8 3.3E-17 8.5E-22 139.8 27.4 165 185-365 276-445 (501)
22 cd03794 GT1_wbuB_like This fam 99.8 3.6E-18 9.1E-23 146.6 21.7 338 6-358 1-393 (394)
23 cd03801 GT1_YqgM_like This fam 99.8 9.2E-18 2.4E-22 143.7 21.4 336 6-361 1-372 (374)
24 cd03811 GT1_WabH_like This fam 99.8 1.4E-17 3.5E-22 142.5 22.0 318 6-345 1-346 (353)
25 cd03820 GT1_amsD_like This fam 99.8 3.3E-17 8.4E-22 139.8 23.6 326 6-360 1-348 (348)
26 cd04951 GT1_WbdM_like This fam 99.8 1.2E-16 3E-21 135.9 22.9 324 13-361 10-357 (360)
27 cd03817 GT1_UGDG_like This fam 99.8 3.6E-16 9.2E-21 132.5 24.2 332 6-358 1-370 (374)
28 cd03807 GT1_WbnK_like This fam 99.8 1.1E-16 2.9E-21 136.1 20.4 328 7-361 2-363 (365)
29 cd04962 GT1_like_5 This family 99.8 1.4E-16 3.7E-21 135.4 20.3 334 6-362 2-368 (371)
30 TIGR03088 stp2 sugar transfera 99.8 6.5E-16 1.7E-20 130.8 23.3 333 5-363 2-371 (374)
31 cd03822 GT1_ecORF704_like This 99.8 4E-16 1E-20 132.3 22.2 318 12-361 13-364 (366)
32 PRK01021 lpxB lipid-A-disaccha 99.8 5E-16 1.3E-20 131.6 22.5 327 5-345 227-584 (607)
33 cd03821 GT1_Bme6_like This fam 99.8 3.4E-16 8.7E-21 132.7 20.9 334 6-359 1-374 (375)
34 cd03800 GT1_Sucrose_synthase T 99.8 3.7E-16 9.5E-21 132.5 20.8 333 13-359 19-397 (398)
35 cd03799 GT1_amsK_like This is 99.8 7.6E-16 1.9E-20 130.3 21.8 320 6-356 1-353 (355)
36 cd03819 GT1_WavL_like This fam 99.8 2E-16 5.1E-21 134.3 18.5 310 13-346 8-346 (355)
37 cd03798 GT1_wlbH_like This fam 99.8 7.2E-16 1.8E-20 130.5 21.1 333 14-362 13-374 (377)
38 cd03812 GT1_CapH_like This fam 99.8 5.3E-16 1.4E-20 131.4 19.1 313 7-347 2-346 (358)
39 TIGR03449 mycothiol_MshA UDP-N 99.7 5.1E-16 1.3E-20 131.5 18.8 337 14-363 19-400 (405)
40 cd03796 GT1_PIG-A_like This fa 99.7 1.3E-15 3.3E-20 128.7 20.7 324 12-363 14-366 (398)
41 COG0763 LpxB Lipid A disacchar 99.7 8E-16 2E-20 130.2 19.4 345 5-363 2-380 (381)
42 cd03823 GT1_ExpE7_like This fa 99.7 1.8E-15 4.5E-20 127.7 20.0 331 6-361 1-356 (359)
43 cd03795 GT1_like_4 This family 99.7 6.7E-15 1.7E-19 123.7 22.4 316 6-347 1-348 (357)
44 cd03805 GT1_ALG2_like This fam 99.7 3.8E-14 9.7E-19 118.4 22.3 336 6-356 2-390 (392)
45 pfam08660 Alg14 Oligosaccharid 99.7 1.8E-16 4.7E-21 134.6 7.0 152 8-163 2-165 (166)
46 TIGR03492 conserved hypothetic 99.6 7E-14 1.8E-18 116.6 18.6 336 8-361 2-395 (396)
47 cd05844 GT1_like_7 Glycosyltra 99.6 6.3E-14 1.6E-18 116.9 17.4 260 82-360 71-366 (367)
48 cd03825 GT1_wcfI_like This fam 99.6 3.5E-12 9E-17 104.7 25.5 192 154-362 157-362 (365)
49 pfam04007 DUF354 Protein of un 99.6 1.4E-13 3.5E-18 114.5 17.0 295 6-330 2-309 (335)
50 PRK09922 UDP-D-galactose:(gluc 99.6 2.7E-12 6.8E-17 105.5 23.2 326 4-358 2-355 (361)
51 PRK05749 3-deoxy-D-manno-octul 99.6 4E-11 1E-15 97.3 28.7 321 5-362 50-419 (423)
52 TIGR03568 NeuC_NnaA UDP-N-acet 99.6 4.6E-13 1.2E-17 110.8 18.7 331 5-358 1-365 (365)
53 cd03818 GT1_ExpC_like This fam 99.6 4.7E-12 1.2E-16 103.8 22.5 323 6-347 1-382 (396)
54 KOG1192 consensus 99.6 2.4E-11 6.2E-16 98.8 24.4 184 155-345 244-436 (496)
55 cd04955 GT1_like_6 This family 99.5 3.4E-12 8.6E-17 104.8 19.0 316 12-361 15-361 (363)
56 COG0381 WecB UDP-N-acetylgluco 99.5 8.9E-12 2.3E-16 101.9 20.9 339 1-364 1-374 (383)
57 pfam02350 Epimerase_2 UDP-N-ac 99.5 1.7E-12 4.4E-17 106.8 13.7 262 82-359 56-346 (346)
58 cd03809 GT1_mtfB_like This fam 99.5 2.2E-11 5.6E-16 99.1 18.8 312 20-359 20-364 (365)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 3E-12 7.6E-17 105.2 12.9 332 6-359 1-363 (363)
60 TIGR03087 stp1 sugar transfera 99.4 2E-10 5.2E-15 92.3 20.8 325 15-363 14-395 (397)
61 cd03802 GT1_AviGT4_like This f 99.4 2.8E-10 7.1E-15 91.4 20.7 311 6-361 2-333 (335)
62 COG1519 KdtA 3-deoxy-D-manno-o 99.3 5.4E-08 1.4E-12 75.4 27.7 320 5-360 50-417 (419)
63 COG1817 Uncharacterized protei 99.3 1.1E-08 2.7E-13 80.3 21.5 323 6-363 2-341 (346)
64 cd03813 GT1_like_3 This family 99.2 1.4E-09 3.6E-14 86.4 15.3 241 101-357 182-469 (475)
65 pfam00534 Glycos_transf_1 Glyc 99.2 1.1E-09 2.7E-14 87.3 13.0 160 175-344 4-171 (172)
66 KOG3349 consensus 99.2 4.5E-10 1.1E-14 89.9 10.2 125 186-315 4-136 (170)
67 TIGR00661 MJ1255 conserved hyp 99.1 3E-09 7.7E-14 84.1 11.9 290 6-313 1-330 (353)
68 cd04949 GT1_gtfA_like This fam 99.0 9.8E-09 2.5E-13 80.6 12.9 161 184-356 203-370 (372)
69 PRK10125 predicted glycosyl tr 99.0 1.1E-06 2.7E-11 66.3 22.9 329 6-361 3-401 (405)
70 cd03792 GT1_Trehalose_phosphor 99.0 1.3E-06 3.4E-11 65.7 21.4 322 15-363 12-370 (372)
71 cd04946 GT1_AmsK_like This fam 98.9 2.5E-07 6.5E-12 70.7 16.9 152 183-345 228-391 (407)
72 cd03804 GT1_wbaZ_like This fam 98.9 4.1E-07 1E-11 69.3 16.8 114 218-346 223-342 (351)
73 cd03791 GT1_Glycogen_synthase_ 98.9 2E-06 5.1E-11 64.4 19.5 146 203-356 313-472 (476)
74 PRK00654 glgA glycogen synthas 98.8 4E-06 1E-10 62.3 19.6 152 202-361 309-474 (476)
75 TIGR02149 glgA_Coryne glycogen 98.8 4.4E-07 1.1E-11 69.0 14.0 324 12-361 16-411 (416)
76 TIGR02472 sucr_P_syn_N sucrose 98.8 2E-06 5.2E-11 64.4 16.7 305 13-344 24-425 (445)
77 cd04950 GT1_like_1 Glycosyltra 98.7 1.7E-05 4.3E-10 58.0 20.1 333 1-360 1-371 (373)
78 cd01635 Glycosyltransferase_GT 98.7 2.3E-06 5.9E-11 64.0 14.5 193 14-288 12-214 (229)
79 pfam06258 DUF1022 Protein of u 98.6 6E-06 1.5E-10 61.1 15.3 261 15-312 1-278 (308)
80 COG5017 Uncharacterized conser 98.6 8.6E-07 2.2E-11 67.0 10.0 118 188-315 2-125 (161)
81 cd03816 GT1_ALG1_like This fam 98.5 1.9E-05 5E-10 57.5 16.4 329 3-347 2-400 (415)
82 PRK10017 putative pyruvyl tran 98.5 6.7E-05 1.7E-09 53.8 18.9 258 93-362 117-423 (426)
83 COG3660 Predicted nucleoside-d 98.3 9.7E-05 2.5E-09 52.6 15.1 273 7-313 4-299 (329)
84 KOG2941 consensus 98.2 0.00067 1.7E-08 46.8 19.3 326 1-347 9-425 (444)
85 cd03806 GT1_ALG11_like This fa 98.2 0.00062 1.6E-08 47.0 16.9 91 242-345 305-407 (419)
86 PRK10422 lipopolysaccharide co 98.1 0.0014 3.6E-08 44.5 20.8 265 1-285 1-287 (352)
87 pfam06925 MGDG_synth Monogalac 98.0 9E-07 2.3E-11 66.8 0.0 78 82-165 78-169 (169)
88 COG0859 RfaF ADP-heptose:LPS h 98.0 0.002 5E-08 43.5 17.4 256 5-285 2-276 (334)
89 pfam04464 Glyphos_transf CDP-G 98.0 8.9E-05 2.3E-09 52.9 9.5 110 242-360 69-186 (186)
90 PRK10964 ADP-heptose:LPS hepto 98.0 0.00076 1.9E-08 46.4 14.1 296 6-330 2-321 (322)
91 KOG3339 consensus 97.7 0.0001 2.6E-09 52.4 6.2 152 6-163 40-209 (211)
92 cd03789 GT1_LPS_heptosyltransf 97.7 0.0069 1.8E-07 39.7 16.1 213 6-285 1-223 (279)
93 KOG1111 consensus 97.6 0.002 5E-08 43.5 11.3 316 10-365 13-371 (426)
94 COG4370 Uncharacterized protei 96.9 0.0011 2.7E-08 45.3 3.8 104 251-362 303-411 (412)
95 TIGR00236 wecB UDP-N-acetylglu 96.8 0.055 1.4E-06 33.4 15.8 325 13-360 8-378 (380)
96 COG2099 CobK Precorrin-6x redu 96.8 0.056 1.4E-06 33.3 16.1 210 5-288 3-231 (257)
97 COG1887 TagB Putative glycosyl 96.7 0.059 1.5E-06 33.2 12.2 103 250-361 277-387 (388)
98 TIGR03609 S_layer_CsaB polysac 96.5 0.059 1.5E-06 33.2 10.5 203 94-308 65-291 (298)
99 PRK06849 hypothetical protein; 96.5 0.056 1.4E-06 33.3 10.2 127 1-149 1-134 (387)
100 TIGR02095 glgA glycogen/starch 96.4 0.071 1.8E-06 32.6 10.5 166 186-358 326-514 (517)
101 TIGR00215 lpxB lipid-A-disacch 96.3 0.048 1.2E-06 33.8 8.8 271 6-284 8-297 (393)
102 TIGR01179 galE UDP-glucose 4-e 96.3 0.0099 2.5E-07 38.6 5.2 93 6-127 1-105 (341)
103 PRK00652 lpxK tetraacyldisacch 96.2 0.021 5.3E-07 36.3 6.7 89 10-103 58-151 (334)
104 COG0438 RfaG Glycosyltransfera 96.2 0.12 3.1E-06 30.9 14.7 110 242-361 257-373 (381)
105 pfam02606 LpxK Tetraacyldisacc 96.1 0.018 4.5E-07 36.8 5.8 87 10-103 44-137 (318)
106 COG1663 LpxK Tetraacyldisaccha 96.0 0.039 1E-06 34.4 7.1 91 10-103 56-151 (336)
107 pfam02571 CbiJ Precorrin-6x re 95.8 0.18 4.6E-06 29.8 15.5 209 6-288 2-224 (246)
108 COG2327 WcaK Polysaccharide py 95.8 0.18 4.7E-06 29.7 15.3 78 252-337 278-357 (385)
109 COG4641 Uncharacterized protei 95.7 0.19 4.8E-06 29.6 15.4 99 252-362 250-360 (373)
110 KOG0853 consensus 95.7 0.036 9.2E-07 34.7 6.0 102 256-365 362-472 (495)
111 KOG1387 consensus 95.7 0.2 5.1E-06 29.4 14.8 78 251-346 348-440 (465)
112 pfam01370 Epimerase NAD depend 95.5 0.17 4.3E-06 30.0 9.0 77 8-105 1-77 (235)
113 PRK00313 lpxK tetraacyldisacch 95.4 0.071 1.8E-06 32.6 6.7 33 10-43 60-92 (332)
114 PRK12778 putative bifunctional 95.2 0.16 4.2E-06 30.1 8.0 103 3-121 97-208 (760)
115 pfam01075 Glyco_transf_9 Glyco 95.1 0.29 7.4E-06 28.3 13.5 96 186-285 108-210 (249)
116 TIGR01369 CPSaseII_lrg carbamo 95.1 0.026 6.7E-07 35.6 3.7 35 4-38 573-613 (1089)
117 PRK09814 hypothetical protein; 95.1 0.086 2.2E-06 32.0 6.4 62 273-348 258-319 (337)
118 TIGR02468 sucrsPsyn_pln sucros 94.9 0.031 7.9E-07 35.1 3.7 87 251-347 563-657 (1072)
119 PRK12775 putative trifunctiona 94.9 0.22 5.7E-06 29.1 8.1 107 3-122 98-210 (993)
120 KOG0832 consensus 94.9 0.039 1E-06 34.4 4.1 25 261-285 175-202 (251)
121 TIGR02114 coaB_strep phosphopa 94.7 0.04 1E-06 34.3 3.8 73 6-98 2-88 (253)
122 pfam06032 DUF917 Protein of un 94.6 0.24 6.1E-06 28.9 7.6 103 8-120 15-120 (352)
123 PHA01630 putative group 1 glyc 94.2 0.49 1.2E-05 26.7 9.9 152 202-364 160-332 (333)
124 PRK10916 ADP-heptose:LPS hepto 94.1 0.51 1.3E-05 26.6 19.1 298 6-331 2-345 (348)
125 PRK07208 hypothetical protein; 93.9 0.11 2.9E-06 31.2 4.7 32 3-39 2-33 (474)
126 pfam04413 Glycos_transf_N 3-De 93.7 0.6 1.5E-05 26.1 11.8 103 5-128 22-128 (186)
127 KOG4626 consensus 93.6 0.63 1.6E-05 26.0 9.0 84 256-345 832-918 (966)
128 PRK12745 3-ketoacyl-(acyl-carr 93.5 0.21 5.4E-06 29.3 5.4 37 1-40 1-37 (259)
129 pfam04321 RmlD_sub_bind RmlD s 93.4 0.28 7.2E-06 28.4 6.0 63 8-107 1-63 (284)
130 PRK02797 4-alpha-L-fucosyltran 93.4 0.67 1.7E-05 25.8 11.8 162 182-363 180-356 (358)
131 PRK06847 hypothetical protein; 93.3 0.16 4.2E-06 30.1 4.7 34 1-39 1-34 (375)
132 PRK05993 short chain dehydroge 93.3 0.45 1.2E-05 27.0 6.9 38 1-43 1-38 (277)
133 TIGR02918 TIGR02918 conserved 93.1 0.16 4.1E-06 30.1 4.3 146 202-362 349-508 (511)
134 cd06218 DHOD_e_trans FAD/NAD b 93.1 0.61 1.5E-05 26.1 7.3 11 155-166 79-89 (246)
135 PRK10217 dTDP-glucose 4,6-dehy 93.1 0.58 1.5E-05 26.2 7.2 80 5-104 2-85 (355)
136 PRK12377 putative replication 93.0 0.3 7.5E-06 28.3 5.6 41 218-265 129-169 (248)
137 PRK12311 rpsB 30S ribosomal pr 92.7 0.84 2.1E-05 25.1 7.6 113 14-126 48-193 (332)
138 PRK06179 short chain dehydroge 92.6 0.31 8E-06 28.1 5.3 39 1-44 1-39 (270)
139 PRK05299 rpsB 30S ribosomal pr 92.5 0.39 9.9E-06 27.4 5.6 17 269-285 170-186 (255)
140 PRK05294 carB carbamoyl phosph 92.4 0.9 2.3E-05 24.9 7.8 82 4-106 7-96 (1063)
141 PRK07236 hypothetical protein; 92.3 0.24 6.1E-06 28.9 4.4 33 1-38 1-35 (386)
142 PRK06180 short chain dehydroge 92.3 0.37 9.4E-06 27.6 5.3 38 1-43 1-38 (277)
143 TIGR01011 rpsB_bact ribosomal 91.9 1 2.5E-05 24.6 7.2 14 271-284 172-185 (227)
144 PRK09620 hypothetical protein; 91.9 0.46 1.2E-05 26.9 5.4 39 4-42 3-53 (229)
145 PRK06947 glucose-1-dehydrogena 91.9 0.48 1.2E-05 26.8 5.5 37 1-40 1-38 (252)
146 cd01976 Nitrogenase_MoFe_alpha 91.7 1.1 2.8E-05 24.3 7.2 26 258-285 368-393 (421)
147 PRK10675 UDP-galactose-4-epime 91.6 1.1 2.8E-05 24.3 9.7 30 6-39 2-31 (338)
148 TIGR01316 gltA glutamate synth 91.6 1.1 2.8E-05 24.3 8.7 99 3-120 141-250 (462)
149 TIGR01137 cysta_beta cystathio 91.6 0.66 1.7E-05 25.8 5.9 87 3-93 178-276 (527)
150 PRK08057 cobalt-precorrin-6x r 91.6 1.1 2.8E-05 24.2 14.2 39 85-123 54-96 (241)
151 PRK07326 short chain dehydroge 91.4 0.47 1.2E-05 26.8 5.1 36 1-39 1-36 (235)
152 PRK12937 short chain dehydroge 91.1 0.57 1.5E-05 26.3 5.2 37 1-40 1-37 (245)
153 COG3914 Spy Predicted O-linked 91.0 1.3 3.3E-05 23.8 11.4 148 181-341 425-587 (620)
154 PRK01906 tetraacyldisaccharide 90.9 0.4 1E-05 27.4 4.3 34 10-44 65-98 (339)
155 PRK08163 salicylate hydroxylas 90.8 0.5 1.3E-05 26.7 4.7 34 1-39 1-34 (396)
156 pfam04127 DFP DNA / pantothena 90.7 0.48 1.2E-05 26.8 4.5 40 3-42 1-52 (197)
157 pfam07429 Fuc4NAc_transf 4-alp 90.6 1.4 3.5E-05 23.6 10.4 139 180-330 180-332 (361)
158 PRK10084 dTDP-glucose 4,6 dehy 90.5 1.4 3.6E-05 23.6 7.0 78 6-104 2-84 (352)
159 cd06220 DHOD_e_trans_like2 FAD 90.5 1.4 3.6E-05 23.5 7.4 14 155-169 71-84 (233)
160 COG1171 IlvA Threonine dehydra 90.3 1.4 3.7E-05 23.5 9.8 192 92-332 72-278 (347)
161 PRK05565 fabG 3-ketoacyl-(acyl 89.8 0.93 2.4E-05 24.8 5.4 39 1-42 1-39 (247)
162 CHL00067 rps2 ribosomal protei 89.8 0.79 2E-05 25.3 5.1 16 270-285 171-186 (227)
163 pfam02719 Polysacc_synt_2 Poly 89.7 1.6 4.1E-05 23.1 8.4 29 9-40 2-30 (280)
164 PRK05653 fabG 3-ketoacyl-(acyl 89.7 0.85 2.2E-05 25.1 5.1 36 1-39 1-36 (246)
165 PRK05920 aromatic acid decarbo 89.6 1.2 3E-05 24.1 5.8 48 1-49 1-48 (205)
166 PRK00421 murC UDP-N-acetylmura 89.6 1.4 3.6E-05 23.5 6.2 31 3-38 7-38 (459)
167 PRK12826 3-ketoacyl-(acyl-carr 89.5 0.9 2.3E-05 24.9 5.1 36 1-39 1-37 (253)
168 KOG1209 consensus 89.4 0.6 1.5E-05 26.1 4.1 39 1-43 4-42 (289)
169 LOAD_surE consensus 89.3 1.7 4.4E-05 22.9 6.5 34 6-41 2-36 (192)
170 PRK06835 DNA replication prote 89.3 1.1 2.8E-05 24.3 5.4 67 186-265 184-252 (330)
171 pfam00318 Ribosomal_S2 Ribosom 89.3 1.7 4.2E-05 23.0 6.4 17 269-285 150-166 (205)
172 COG1086 Predicted nucleoside-d 89.2 1.7 4.5E-05 22.9 8.4 25 85-120 317-341 (588)
173 PRK06732 phosphopantothenate-- 89.1 0.71 1.8E-05 25.6 4.4 37 6-42 2-50 (228)
174 PRK13932 stationary phase surv 89.1 1.4 3.7E-05 23.5 5.9 112 2-122 4-132 (258)
175 TIGR02470 sucr_synth sucrose s 89.0 0.17 4.4E-06 29.9 1.2 68 269-344 663-732 (790)
176 PRK09072 short chain dehydroge 88.9 1 2.6E-05 24.5 5.1 36 1-39 1-36 (262)
177 TIGR01777 yfcH conserved hypot 88.7 0.54 1.4E-05 26.4 3.6 30 8-40 1-31 (307)
178 COG1087 GalE UDP-glucose 4-epi 88.6 1.9 4.9E-05 22.6 6.4 91 6-127 2-96 (329)
179 PRK09134 short chain dehydroge 88.6 1.4 3.6E-05 23.5 5.6 38 1-42 6-43 (256)
180 COG1484 DnaC DNA replication p 88.4 1.5 3.9E-05 23.3 5.7 69 184-264 104-172 (254)
181 PRK08305 spoVFB dipicolinate s 88.4 1.7 4.4E-05 22.9 5.9 48 1-50 1-51 (195)
182 cd01425 RPS2 Ribosomal protein 88.3 1.3 3.4E-05 23.7 5.3 16 270-285 141-156 (193)
183 PRK12815 carB carbamoyl phosph 88.2 2 5.1E-05 22.4 8.4 84 4-107 7-97 (1068)
184 COG0543 UbiB 2-polyprenylpheno 88.1 1.2 3.1E-05 24.0 5.0 37 154-201 87-123 (252)
185 PRK09135 pteridine reductase; 88.1 1.4 3.7E-05 23.5 5.4 38 1-41 2-39 (249)
186 pfam00148 Oxidored_nitro Nitro 88.0 1.8 4.6E-05 22.8 5.9 37 251-289 331-369 (398)
187 TIGR01035 hemA glutamyl-tRNA r 87.9 2.1 5.4E-05 22.3 12.9 97 177-285 176-290 (436)
188 PRK07707 consensus 87.9 1.2 3.2E-05 23.9 5.0 32 6-40 3-34 (239)
189 PRK12746 short chain dehydroge 87.7 1.5 3.8E-05 23.4 5.2 39 1-42 1-40 (254)
190 cd06192 DHOD_e_trans_like FAD/ 87.6 1.2 3.2E-05 23.9 4.8 36 187-227 99-134 (243)
191 KOG1252 consensus 87.6 0.67 1.7E-05 25.8 3.4 23 99-121 110-132 (362)
192 TIGR01857 FGAM-synthase phosph 87.4 2.1 5.3E-05 22.3 5.9 99 229-331 953-1067(1279)
193 cd00764 Eukaryotic_PFK Phospho 87.4 2.3 5.7E-05 22.1 7.5 101 3-106 2-110 (762)
194 cd00763 Bacterial_PFK Phosphof 87.4 2.2 5.5E-05 22.2 6.0 111 5-120 1-119 (317)
195 PRK13394 3-hydroxybutyrate deh 87.4 1.4 3.6E-05 23.5 5.0 36 1-39 2-38 (262)
196 PRK12779 putative bifunctional 87.3 2.3 5.8E-05 22.1 6.5 31 3-38 305-335 (944)
197 PRK04308 murD UDP-N-acetylmura 87.3 2.3 5.9E-05 22.0 6.8 34 1-40 1-36 (445)
198 PRK07231 fabG 3-ketoacyl-(acyl 87.2 1.4 3.7E-05 23.5 5.0 36 1-39 2-37 (250)
199 PRK12825 fabG 3-ketoacyl-(acyl 87.2 1.9 4.8E-05 22.6 5.6 35 4-41 6-40 (250)
200 TIGR02015 BchY chlorophyllide 87.1 0.4 1E-05 27.3 2.1 124 188-340 292-420 (426)
201 PRK09291 short chain dehydroge 87.0 1.8 4.5E-05 22.9 5.3 33 1-39 1-33 (257)
202 PRK07454 short chain dehydroge 87.0 1.7 4.2E-05 23.0 5.2 35 1-39 3-37 (241)
203 PRK06123 short chain dehydroge 86.9 1.7 4.3E-05 23.0 5.2 35 1-40 1-35 (249)
204 TIGR02193 heptsyl_trn_I lipopo 86.7 2.5 6.3E-05 21.8 12.0 306 6-329 1-359 (359)
205 PRK06500 short chain dehydroge 86.6 1.7 4.4E-05 22.9 5.1 35 1-39 1-37 (249)
206 PRK07904 short chain dehydroge 86.6 1.2 3.1E-05 24.0 4.3 36 3-42 7-42 (253)
207 PRK03202 6-phosphofructokinase 86.6 1.2 3E-05 24.1 4.2 111 5-120 3-122 (323)
208 PRK05868 hypothetical protein; 86.5 1.2 3.1E-05 24.0 4.3 29 5-38 2-30 (372)
209 PRK07952 DNA replication prote 86.5 2.3 5.9E-05 22.0 5.7 68 188-265 98-165 (242)
210 PRK06200 2,3-dihydroxy-2,3-dih 86.4 1.7 4.3E-05 23.0 5.0 36 1-39 1-37 (263)
211 pfam08323 Glyco_transf_5 Starc 86.3 2.6 6.6E-05 21.7 6.9 30 14-43 14-43 (229)
212 PRK12743 acetoin dehydrogenase 86.3 1.7 4.4E-05 22.9 5.0 35 1-41 1-35 (253)
213 PRK08264 short chain dehydroge 86.1 1.8 4.6E-05 22.8 4.9 40 1-43 1-40 (235)
214 TIGR03325 BphB_TodD cis-2,3-di 85.9 2 5.1E-05 22.5 5.1 36 1-39 1-36 (262)
215 cd03788 GT1_TPS Trehalose-6-Ph 85.9 2.7 6.9E-05 21.6 6.1 97 251-358 352-456 (460)
216 PRK08339 short chain dehydroge 85.9 1.9 4.7E-05 22.7 4.9 35 2-39 5-39 (263)
217 PRK08642 fabG 3-ketoacyl-(acyl 85.9 2 5.1E-05 22.4 5.1 36 1-39 2-37 (254)
218 PRK00973 glucose-6-phosphate i 85.8 2.7 6.9E-05 21.5 6.1 49 13-61 79-141 (454)
219 PRK06222 ferredoxin-NADP(+) re 85.8 1.8 4.7E-05 22.7 4.9 14 187-200 100-113 (281)
220 pfam01488 Shikimate_DH Shikima 85.8 2.7 6.8E-05 21.6 5.7 89 185-285 12-105 (134)
221 PRK08643 acetoin reductase; Va 85.6 1.8 4.6E-05 22.8 4.8 33 1-39 1-33 (256)
222 PRK07479 consensus 85.6 2.1 5.4E-05 22.3 5.1 36 1-39 1-36 (252)
223 PRK07313 phosphopantothenoylcy 85.5 2.5 6.3E-05 21.8 5.4 47 1-50 1-47 (180)
224 PRK08177 short chain dehydroge 85.5 2.8 7.2E-05 21.4 8.0 32 4-39 1-32 (225)
225 pfam02310 B12-binding B12 bind 85.4 2.1 5.4E-05 22.3 5.0 34 6-39 2-35 (121)
226 PRK05557 fabG 3-ketoacyl-(acyl 85.3 2.2 5.7E-05 22.1 5.1 37 1-40 1-37 (248)
227 PRK06398 aldose dehydrogenase; 85.2 2.1 5.5E-05 22.3 5.0 36 1-39 1-37 (256)
228 PRK07041 short chain dehydroge 85.2 2.1 5.4E-05 22.3 5.0 36 1-39 3-38 (240)
229 cd06219 DHOD_e_trans_like1 FAD 85.1 2 5.2E-05 22.4 4.8 15 187-201 99-113 (248)
230 PRK08936 glucose-1-dehydrogena 85.0 2.5 6.3E-05 21.9 5.2 37 1-40 1-39 (261)
231 PRK12938 acetyacetyl-CoA reduc 85.0 1.9 4.9E-05 22.6 4.7 35 1-40 1-35 (246)
232 PRK12767 carbamoyl phosphate s 85.0 3 7.5E-05 21.3 5.7 74 5-100 2-76 (325)
233 PRK12742 oxidoreductase; Provi 85.0 2.5 6.5E-05 21.7 5.3 35 1-39 1-37 (237)
234 PRK08703 short chain dehydroge 85.0 2.2 5.7E-05 22.1 5.0 31 5-39 7-37 (239)
235 COG0052 RpsB Ribosomal protein 85.0 3 7.6E-05 21.3 5.7 18 268-285 168-185 (252)
236 PRK12823 benD 1,6-dihydroxycyc 84.9 2.3 5.8E-05 22.1 5.0 37 1-40 2-40 (260)
237 PRK08416 7-alpha-hydroxysteroi 84.9 2.5 6.3E-05 21.8 5.2 38 1-41 2-41 (260)
238 COG1028 FabG Dehydrogenases wi 84.9 2.3 5.8E-05 22.1 5.0 39 2-43 2-40 (251)
239 PRK05875 short chain dehydroge 84.8 2.3 5.9E-05 22.1 5.0 36 1-39 3-38 (277)
240 PRK08862 short chain dehydroge 84.8 2.4 6E-05 22.0 5.1 39 1-43 1-39 (227)
241 PRK06182 short chain dehydroge 84.7 2 5E-05 22.5 4.6 39 1-45 1-39 (273)
242 PRK06346 consensus 84.7 2.4 6.1E-05 21.9 5.0 36 1-39 1-36 (251)
243 cd00316 Oxidoreductase_nitroge 84.6 3.1 7.8E-05 21.2 6.3 36 251-288 338-375 (399)
244 PRK06483 short chain dehydroge 84.5 2.1 5.3E-05 22.3 4.7 33 1-39 1-33 (236)
245 PRK07856 short chain dehydroge 84.5 2.3 5.8E-05 22.1 4.9 35 2-39 5-39 (254)
246 COG0143 MetG Methionyl-tRNA sy 84.5 2.6 6.6E-05 21.7 5.2 40 1-40 1-50 (558)
247 PRK07890 short chain dehydroge 84.4 2.4 6.2E-05 21.9 5.0 36 1-39 1-36 (258)
248 PRK05872 short chain dehydroge 84.4 2.4 6.2E-05 21.9 5.0 37 1-40 4-41 (296)
249 COG3967 DltE Short-chain dehyd 84.3 2.3 5.8E-05 22.1 4.8 38 4-46 5-42 (245)
250 PRK07045 putative monooxygenas 84.3 1.9 4.9E-05 22.6 4.5 34 1-39 1-35 (388)
251 PRK10117 trehalose-6-phosphate 84.2 3.2 8.2E-05 21.0 7.2 101 251-362 343-455 (474)
252 PRK08217 fabG 3-ketoacyl-(acyl 84.2 2.6 6.7E-05 21.6 5.1 36 1-39 1-36 (253)
253 PRK09224 threonine dehydratase 84.1 3.2 8.2E-05 21.0 6.6 32 8-43 71-102 (504)
254 PRK12384 sorbitol-6-phosphate 84.1 2.3 6E-05 22.0 4.8 33 1-39 1-33 (259)
255 PRK05786 fabG 3-ketoacyl-(acyl 84.1 2.7 6.9E-05 21.6 5.1 35 1-39 1-36 (238)
256 PRK06198 short chain dehydroge 84.0 2.9 7.3E-05 21.4 5.2 40 1-44 1-42 (268)
257 PRK08017 short chain dehydroge 84.0 3.2 8.3E-05 21.0 6.2 34 5-43 3-36 (256)
258 PRK12483 threonine dehydratase 84.0 3.3 8.3E-05 21.0 7.2 32 8-43 88-119 (521)
259 cd06185 PDR_like Phthalate dio 83.9 2.2 5.6E-05 22.2 4.6 34 186-225 100-133 (211)
260 PRK08278 short chain dehydroge 83.6 2.8 7.2E-05 21.4 5.1 36 1-39 2-37 (273)
261 PRK08220 2,3-dihydroxybenzoate 83.6 2.9 7.3E-05 21.4 5.1 42 1-46 4-45 (253)
262 COG0458 CarB Carbamoylphosphat 83.5 3.4 8.7E-05 20.8 8.1 95 4-122 5-106 (400)
263 PRK09183 transposase/IS protei 83.4 3 7.8E-05 21.2 5.2 11 184-194 100-110 (258)
264 PRK06924 short chain dehydroge 83.4 2.9 7.3E-05 21.4 5.0 32 5-40 2-33 (251)
265 pfam04820 Trp_halogenase Trypt 83.4 1.1 2.9E-05 24.2 3.0 32 6-39 1-32 (457)
266 PRK08265 short chain dehydroge 83.3 3 7.7E-05 21.2 5.1 33 4-39 5-37 (261)
267 PRK05717 oxidoreductase; Valid 83.2 3 7.7E-05 21.2 5.1 31 6-39 11-41 (255)
268 COG3535 Uncharacterized conser 83.2 3.5 8.9E-05 20.8 7.0 122 15-146 25-182 (357)
269 PRK00054 dihydroorotate dehydr 83.2 2.4 6.1E-05 21.9 4.5 35 187-226 102-136 (248)
270 PRK05579 bifunctional phosphop 83.1 3.5 9E-05 20.8 5.8 49 1-50 1-49 (392)
271 PRK06194 hypothetical protein; 83.0 3.1 7.9E-05 21.2 5.0 35 1-39 1-37 (301)
272 PRK06057 short chain dehydroge 83.0 3 7.7E-05 21.2 5.0 36 1-39 1-38 (255)
273 cd06211 phenol_2-monooxygenase 83.0 2.9 7.4E-05 21.3 4.9 37 186-227 111-148 (238)
274 PRK12859 3-ketoacyl-(acyl-carr 83.0 2.6 6.8E-05 21.6 4.7 35 1-38 1-38 (257)
275 PRK12824 acetoacetyl-CoA reduc 83.0 3.3 8.5E-05 20.9 5.2 32 6-40 3-34 (245)
276 cd05213 NAD_bind_Glutamyl_tRNA 82.9 3.6 9.2E-05 20.7 7.8 89 184-286 177-271 (311)
277 PRK12939 short chain dehydroge 82.8 3.1 8E-05 21.1 5.0 36 1-39 1-38 (250)
278 PRK06138 short chain dehydroge 82.8 3.1 8E-05 21.1 5.0 36 1-39 1-36 (252)
279 PRK12828 short chain dehydroge 82.7 3.2 8.1E-05 21.1 5.0 36 1-39 1-38 (239)
280 PRK13935 stationary phase surv 82.5 3.7 9.5E-05 20.6 6.7 108 6-121 2-125 (255)
281 PRK07588 hypothetical protein; 82.5 2.1 5.4E-05 22.3 4.0 28 6-38 2-29 (391)
282 PRK06171 sorbitol-6-phosphate 82.5 3 7.7E-05 21.2 4.8 36 1-39 5-40 (266)
283 PRK08251 short chain dehydroge 82.4 3.4 8.8E-05 20.8 5.1 33 4-40 2-34 (248)
284 pfam02441 Flavoprotein Flavopr 82.4 3.8 9.6E-05 20.6 5.4 45 5-50 1-45 (118)
285 PRK12827 short chain dehydroge 82.2 3.3 8.5E-05 20.9 4.9 36 1-39 1-37 (251)
286 PRK07060 short chain dehydroge 82.2 3.4 8.7E-05 20.9 5.0 31 5-39 10-40 (245)
287 PRK09009 C factor cell-cell si 82.1 1.5 3.8E-05 23.4 3.1 31 6-40 2-32 (235)
288 PRK06914 short chain dehydroge 82.1 3 7.7E-05 21.2 4.7 34 1-39 1-34 (280)
289 COG1091 RfbD dTDP-4-dehydrorha 82.1 3.5 8.9E-05 20.8 5.0 23 84-106 41-63 (281)
290 PRK06113 7-alpha-hydroxysteroi 82.0 3.5 9E-05 20.8 5.0 34 3-39 9-42 (255)
291 TIGR02329 propionate_PrpR prop 81.9 3.9 9.9E-05 20.5 5.3 37 266-307 411-451 (658)
292 PRK06482 short chain dehydroge 81.9 3.2 8.3E-05 21.0 4.8 37 1-44 1-37 (276)
293 cd06217 FNR_iron_sulfur_bindin 81.7 3.2 8.2E-05 21.0 4.8 36 186-226 109-145 (235)
294 PRK07576 short chain dehydroge 81.7 3.5 8.8E-05 20.8 4.9 36 1-39 4-39 (260)
295 PRK07677 short chain dehydroge 81.7 3 7.7E-05 21.2 4.6 34 6-43 4-37 (254)
296 pfam00365 PFK Phosphofructokin 81.6 4 0.0001 20.4 5.7 98 5-107 1-106 (279)
297 CHL00174 accD acetyl-CoA carbo 81.6 3.6 9.1E-05 20.7 4.9 125 191-330 155-301 (305)
298 PRK07774 short chain dehydroge 81.4 3.6 9.1E-05 20.7 4.9 36 1-39 2-37 (250)
299 PRK06125 short chain dehydroge 81.4 3.8 9.6E-05 20.5 5.0 31 5-39 8-38 (259)
300 PRK07067 sorbitol dehydrogenas 81.3 3.9 0.0001 20.4 5.1 36 1-39 1-36 (256)
301 PRK06949 short chain dehydroge 81.2 3.9 9.9E-05 20.5 5.0 36 1-39 5-40 (258)
302 pfam01695 IstB IstB-like ATP b 81.1 4.1 0.00011 20.3 5.7 10 255-264 104-113 (178)
303 COG0031 CysK Cysteine synthase 81.0 2.8 7.1E-05 21.5 4.2 30 92-121 59-90 (300)
304 PRK07102 short chain dehydroge 81.0 4 0.0001 20.4 5.0 31 5-39 2-32 (243)
305 cd06212 monooxygenase_like The 80.8 3.6 9.2E-05 20.7 4.7 38 186-228 105-143 (232)
306 PRK07035 short chain dehydroge 80.8 4.1 0.0001 20.3 5.0 35 2-39 5-39 (252)
307 pfam00551 Formyl_trans_N Formy 80.7 4.3 0.00011 20.2 6.4 83 6-104 2-89 (181)
308 TIGR00520 asnASE_II L-asparagi 80.7 4.3 0.00011 20.2 6.2 90 153-267 209-302 (360)
309 cd02068 radical_SAM_B12_BD B12 80.6 1.6 4.1E-05 23.1 2.9 19 21-39 5-23 (127)
310 pfam09651 Cas_APE2256 CRISPR-a 80.6 4.3 0.00011 20.1 8.9 31 95-125 93-127 (136)
311 PRK12428 3-alpha-hydroxysteroi 80.6 4.2 0.00011 20.2 5.0 36 1-39 1-36 (261)
312 cd03466 Nitrogenase_NifN_2 Nit 80.6 4 0.0001 20.4 4.9 57 231-289 340-400 (429)
313 TIGR01127 ilvA_1Cterm threonin 80.6 4.3 0.00011 20.1 10.2 205 77-330 31-248 (381)
314 PRK05654 acetyl-CoA carboxylas 80.5 4.1 0.0001 20.3 4.9 126 191-330 136-281 (288)
315 COG4889 Predicted helicase [Ge 80.5 4.3 0.00011 20.1 7.0 106 7-118 184-303 (1518)
316 cd06216 FNR_iron_sulfur_bindin 80.4 3.8 9.7E-05 20.5 4.8 36 186-226 124-160 (243)
317 COG1797 CobB Cobyrinic acid a, 80.4 4.2 0.00011 20.2 5.0 34 5-38 1-35 (451)
318 PRK12936 3-ketoacyl-(acyl-carr 80.4 4.1 0.00011 20.3 4.9 36 1-39 2-37 (245)
319 PRK08181 transposase; Validate 80.4 4.4 0.00011 20.1 5.1 11 184-194 105-115 (269)
320 PRK07024 short chain dehydroge 80.3 4.4 0.00011 20.1 5.1 33 1-39 1-33 (256)
321 COG0380 OtsA Trehalose-6-phosp 80.3 4.4 0.00011 20.1 7.3 103 251-364 370-480 (486)
322 TIGR00417 speE spermidine synt 80.2 0.94 2.4E-05 24.8 1.6 15 3-17 75-89 (284)
323 PRK08993 2-deoxy-D-gluconate 3 80.2 4.4 0.00011 20.1 5.0 35 2-39 7-41 (253)
324 PRK05876 short chain dehydroge 80.2 4.4 0.00011 20.1 5.0 35 1-39 1-37 (275)
325 cd06198 FNR_like_3 NAD(P) bind 79.9 3.7 9.4E-05 20.6 4.5 37 186-227 97-134 (216)
326 PRK07577 short chain dehydroge 79.8 3.7 9.5E-05 20.6 4.5 32 4-39 3-34 (234)
327 PRK02261 methylaspartate mutas 79.8 4.6 0.00012 20.0 6.4 46 1-47 1-47 (137)
328 PRK12748 3-ketoacyl-(acyl-carr 79.8 3.7 9.5E-05 20.6 4.5 35 1-38 1-37 (257)
329 PRK06463 fabG 3-ketoacyl-(acyl 79.6 4.5 0.00011 20.0 4.9 36 1-39 1-38 (254)
330 PRK05802 hypothetical protein; 79.5 4.7 0.00012 19.9 6.6 72 157-239 151-222 (328)
331 PRK08945 short chain dehydroge 79.5 4.2 0.00011 20.2 4.7 33 3-39 12-44 (245)
332 PRK08589 short chain dehydroge 79.4 4.3 0.00011 20.1 4.8 36 1-39 1-37 (272)
333 PRK06753 hypothetical protein; 79.3 3.2 8.3E-05 21.0 4.1 28 6-38 2-29 (373)
334 cd06214 PA_degradation_oxidore 79.3 4.7 0.00012 19.9 4.9 35 187-225 111-145 (241)
335 COG4394 Uncharacterized protei 79.3 4.7 0.00012 19.9 10.0 154 201-361 188-368 (370)
336 COG1486 CelF Alpha-galactosida 79.1 4.5 0.00011 20.0 4.8 11 4-14 3-13 (442)
337 pfam00982 Glyco_transf_20 Glyc 79.0 4.8 0.00012 19.8 6.5 100 251-361 360-468 (470)
338 KOG1250 consensus 79.0 4.8 0.00012 19.8 14.6 198 92-334 113-319 (457)
339 PRK07806 short chain dehydroge 79.0 4.8 0.00012 19.8 5.5 37 1-40 1-38 (248)
340 PRK08628 short chain dehydroge 78.9 4.8 0.00012 19.8 5.0 34 4-40 6-39 (258)
341 cd06210 MMO_FAD_NAD_binding Me 78.8 4.9 0.00012 19.8 4.9 35 186-225 110-145 (236)
342 PRK08063 enoyl-(acyl carrier p 78.7 4.9 0.00012 19.8 4.9 34 3-40 3-36 (250)
343 PRK13931 stationary phase surv 78.6 4.9 0.00013 19.7 6.5 106 6-122 2-127 (261)
344 pfam05368 NmrA NmrA-like famil 78.6 3.3 8.5E-05 20.9 4.0 30 8-40 1-30 (232)
345 PRK12429 3-hydroxybutyrate deh 78.5 4.7 0.00012 19.9 4.7 35 1-39 1-35 (258)
346 cd06189 flavin_oxioreductase N 78.3 4.4 0.00011 20.1 4.5 13 187-200 101-113 (224)
347 PRK09242 tropinone reductase; 78.1 5.1 0.00013 19.6 4.9 31 5-39 11-41 (258)
348 PRK06124 gluconate 5-dehydroge 78.1 5.1 0.00013 19.6 5.0 33 4-39 13-45 (259)
349 PRK08051 fre FMN reductase; Va 78.0 5.1 0.00013 19.6 4.9 38 187-228 105-142 (232)
350 cd06190 T4MO_e_transfer_like T 78.0 4.9 0.00013 19.7 4.7 13 187-200 100-112 (232)
351 cd00550 ArsA_ATPase Oxyanion-t 78.0 4.2 0.00011 20.2 4.4 35 6-41 1-37 (254)
352 PRK12829 short chain dehydroge 78.0 5.2 0.00013 19.6 5.0 33 4-39 10-42 (264)
353 COG0300 DltE Short-chain dehyd 78.0 5.2 0.00013 19.6 7.2 35 2-40 4-38 (265)
354 cd06187 O2ase_reductase_like T 77.9 5 0.00013 19.7 4.7 35 187-226 101-136 (224)
355 PRK08116 hypothetical protein; 77.9 5.2 0.00013 19.6 5.1 68 188-265 111-178 (262)
356 PRK05693 short chain dehydroge 77.8 4.9 0.00012 19.8 4.6 35 5-44 2-36 (274)
357 PRK03806 murD UDP-N-acetylmura 77.7 5.3 0.00013 19.5 7.1 36 1-41 1-38 (438)
358 cd06195 FNR1 Ferredoxin-NADP+ 77.6 4.7 0.00012 19.9 4.5 36 187-227 104-140 (241)
359 PRK06172 short chain dehydroge 77.6 5.3 0.00013 19.5 5.0 35 2-39 4-38 (253)
360 PRK07478 short chain dehydroge 77.6 5.3 0.00013 19.5 5.1 36 1-39 2-37 (254)
361 PRK06935 2-deoxy-D-gluconate 3 77.6 5.3 0.00013 19.5 4.8 33 4-39 14-46 (258)
362 KOG1198 consensus 77.6 5.3 0.00013 19.5 5.3 82 183-276 156-242 (347)
363 PRK07062 short chain dehydroge 77.4 5.3 0.00014 19.5 5.0 33 4-39 7-39 (265)
364 PRK07814 short chain dehydroge 77.4 5.4 0.00014 19.5 4.9 33 4-39 9-41 (263)
365 PRK12374 putative dithiobiotin 77.3 4.9 0.00013 19.7 4.5 36 1-38 1-37 (231)
366 KOG1429 consensus 77.2 5.3 0.00014 19.5 4.7 34 2-39 25-58 (350)
367 cd06194 FNR_N-term_Iron_sulfur 77.1 4.4 0.00011 20.1 4.3 58 155-225 77-134 (222)
368 PRK08226 short chain dehydroge 77.0 5.5 0.00014 19.4 5.0 36 1-39 1-37 (263)
369 cd00322 FNR_like Ferredoxin re 76.9 5.1 0.00013 19.6 4.5 11 154-165 77-87 (223)
370 PRK13195 pyrrolidone-carboxyla 76.8 5.5 0.00014 19.4 4.7 63 5-101 2-69 (222)
371 PRK05713 hypothetical protein; 76.8 5.5 0.00014 19.4 4.8 40 185-228 193-232 (312)
372 PRK09186 flagellin modificatio 76.6 5.5 0.00014 19.4 4.6 35 1-39 1-35 (255)
373 KOG4180 consensus 76.6 1.4 3.5E-05 23.6 1.5 17 95-113 107-123 (395)
374 PRK06841 short chain dehydroge 76.5 5.6 0.00014 19.3 5.0 31 5-39 16-46 (255)
375 PRK09730 hypothetical protein; 76.5 5.6 0.00014 19.3 4.6 32 6-40 2-33 (247)
376 PRK07609 CDP-6-deoxy-delta-3,4 76.4 5.6 0.00014 19.4 4.6 34 1-36 1-34 (337)
377 cd06213 oxygenase_e_transfer_s 76.3 4.8 0.00012 19.8 4.3 35 186-225 102-137 (227)
378 PRK12935 acetoacetyl-CoA reduc 76.3 5.7 0.00015 19.3 5.2 36 1-39 2-37 (247)
379 PRK08277 D-mannonate oxidoredu 76.3 5.7 0.00015 19.3 5.0 33 4-39 9-41 (278)
380 PRK06227 consensus 76.2 5.7 0.00015 19.3 5.0 36 1-39 1-36 (256)
381 PRK06701 short chain dehydroge 76.1 3.8 9.7E-05 20.5 3.7 32 4-39 45-76 (289)
382 COG1058 CinA Predicted nucleot 76.0 5.7 0.00015 19.3 4.6 69 21-124 23-95 (255)
383 pfam02374 ArsA_ATPase Anion-tr 75.9 5.5 0.00014 19.4 4.5 36 6-42 2-39 (304)
384 PRK08263 short chain dehydroge 75.8 5.9 0.00015 19.2 4.8 34 5-43 4-37 (275)
385 PRK07776 consensus 75.7 5.9 0.00015 19.2 5.1 34 4-40 7-40 (252)
386 PRK12747 short chain dehydroge 75.6 5.9 0.00015 19.2 4.8 35 3-41 3-37 (252)
387 PRK08085 gluconate 5-dehydroge 75.6 5.9 0.00015 19.2 4.9 32 4-39 9-40 (254)
388 PRK09754 phenylpropionate diox 75.6 5.5 0.00014 19.4 4.4 35 1-41 1-37 (400)
389 COG0297 GlgA Glycogen synthase 75.6 6 0.00015 19.2 9.5 156 203-365 311-482 (487)
390 PRK07097 gluconate 5-dehydroge 75.4 6 0.00015 19.1 4.9 33 4-39 9-41 (265)
391 PRK05854 short chain dehydroge 75.4 5.8 0.00015 19.2 4.5 33 5-40 14-46 (314)
392 KOG1201 consensus 75.3 5.6 0.00014 19.3 4.4 29 4-37 38-67 (300)
393 TIGR01830 3oxo_ACP_reduc 3-oxo 75.2 2.8 7E-05 21.5 2.8 27 9-38 2-28 (238)
394 PRK06197 short chain dehydroge 75.0 6.1 0.00016 19.1 4.5 31 6-39 17-47 (306)
395 CHL00194 ycf39 Ycf39; Provisio 74.9 4.9 0.00013 19.7 4.0 31 6-40 2-32 (319)
396 PRK06526 transposase; Provisio 74.9 6.2 0.00016 19.0 5.1 10 185-194 98-107 (254)
397 PRK00536 speE spermidine synth 74.6 5.1 0.00013 19.6 4.0 13 4-16 73-85 (262)
398 PRK12744 short chain dehydroge 74.6 6.3 0.00016 19.0 4.9 32 5-39 8-39 (257)
399 PRK06181 short chain dehydroge 74.6 6 0.00015 19.1 4.4 31 5-39 2-32 (263)
400 PRK09496 trkA potassium transp 74.5 4.9 0.00012 19.8 3.9 151 154-332 205-365 (455)
401 pfam03853 YjeF_N YjeF-related 74.4 6.4 0.00016 19.0 4.7 32 4-38 28-61 (170)
402 PRK05650 short chain dehydroge 74.3 6.4 0.00016 18.9 5.0 31 5-39 1-31 (270)
403 TIGR01420 pilT_fam twitching m 74.3 5.2 0.00013 19.5 4.0 22 323-344 292-313 (350)
404 PRK07666 fabG 3-ketoacyl-(acyl 74.2 6.4 0.00016 18.9 4.9 32 4-39 6-37 (238)
405 PRK10310 galactitol-specific P 74.2 6.4 0.00016 18.9 5.0 17 21-37 20-36 (94)
406 PRK08773 2-octaprenyl-3-methyl 74.1 6 0.00015 19.1 4.3 34 1-39 1-36 (392)
407 PRK07063 short chain dehydroge 74.1 6.5 0.00017 18.9 5.0 31 5-39 8-38 (259)
408 PRK01438 murD UDP-N-acetylmura 73.6 6.6 0.00017 18.8 5.0 33 4-41 14-46 (481)
409 cd06215 FNR_iron_sulfur_bindin 73.4 6.7 0.00017 18.8 4.4 37 186-227 105-142 (231)
410 cd02067 B12-binding B12 bindin 73.3 6.8 0.00017 18.8 5.3 41 6-47 1-43 (119)
411 PRK06382 threonine dehydratase 73.2 6.8 0.00017 18.8 5.6 37 86-122 59-96 (400)
412 PRK13196 pyrrolidone-carboxyla 73.2 4.2 0.00011 20.2 3.3 67 5-101 2-70 (212)
413 PRK06523 short chain dehydroge 73.2 6.8 0.00017 18.8 5.0 31 5-39 10-40 (260)
414 cd02035 ArsA ArsA ATPase funct 73.2 5.7 0.00014 19.3 4.0 33 7-40 1-35 (217)
415 TIGR00639 PurN phosphoribosylg 73.0 6.8 0.00017 18.7 5.9 109 5-120 3-121 (215)
416 pfam01494 FAD_binding_3 FAD bi 73.0 5.6 0.00014 19.4 3.9 28 6-38 3-30 (349)
417 PRK06953 short chain dehydroge 72.9 6.9 0.00018 18.7 7.0 34 5-43 2-35 (222)
418 PRK01747 mnmC 5-methylaminomet 72.8 6.3 0.00016 19.0 4.2 11 115-125 278-288 (660)
419 PRK08213 gluconate 5-dehydroge 72.5 7 0.00018 18.6 4.9 33 4-39 11-43 (259)
420 pfam06626 DUF1152 Protein of u 72.3 5.1 0.00013 19.6 3.6 31 8-39 2-32 (297)
421 PRK07538 hypothetical protein; 72.3 6.4 0.00016 18.9 4.1 28 6-38 2-29 (413)
422 TIGR01704 MTA/SAH-Nsdase MTA/S 72.1 1.9 4.8E-05 22.7 1.3 21 82-102 55-75 (229)
423 PRK06114 short chain dehydroge 72.1 7.2 0.00018 18.6 4.9 33 4-39 15-47 (262)
424 PRK09423 gldA glycerol dehydro 72.0 7.2 0.00018 18.6 7.7 90 21-121 18-113 (366)
425 PRK07832 short chain dehydroge 71.9 7.2 0.00018 18.6 4.8 34 5-43 1-34 (272)
426 PRK07775 short chain dehydroge 71.8 7.3 0.00019 18.5 4.6 33 3-39 9-41 (275)
427 PRK12267 methionyl-tRNA synthe 71.6 7.4 0.00019 18.5 4.4 39 1-40 1-49 (644)
428 PRK06077 fabG 3-ketoacyl-(acyl 71.6 7.4 0.00019 18.5 4.9 35 4-42 3-37 (249)
429 PRK13982 bifunctional SbtC-lik 71.5 7.4 0.00019 18.5 5.5 45 5-50 72-116 (476)
430 PRK08223 hypothetical protein; 71.5 2.2 5.6E-05 22.2 1.6 31 4-40 27-58 (287)
431 TIGR02619 TIGR02619 putative C 71.4 2.8 7.2E-05 21.4 2.1 29 96-124 109-141 (151)
432 TIGR03589 PseB UDP-N-acetylglu 71.3 7.5 0.00019 18.5 9.2 28 1-32 1-28 (324)
433 PRK07523 gluconate 5-dehydroge 71.2 7.5 0.00019 18.5 4.9 34 5-43 10-43 (251)
434 cd06184 flavohem_like_fad_nad_ 71.1 5.2 0.00013 19.6 3.4 35 187-226 116-151 (247)
435 PRK08198 threonine dehydratase 70.8 7.7 0.0002 18.4 8.9 37 87-123 65-102 (406)
436 TIGR03206 benzo_BadH 2-hydroxy 70.8 7.7 0.0002 18.4 4.6 32 4-39 3-34 (250)
437 TIGR01082 murC UDP-N-acetylmur 70.8 7.7 0.0002 18.4 4.5 88 7-121 2-95 (491)
438 PRK10538 3-hydroxy acid dehydr 70.8 7.7 0.0002 18.4 4.5 33 7-43 2-34 (248)
439 TIGR03219 salicylate_mono sali 70.7 7.2 0.00018 18.6 4.0 28 6-38 2-30 (414)
440 PRK06139 short chain dehydroge 70.7 7.7 0.0002 18.4 4.9 32 4-39 6-37 (324)
441 PRK07494 2-octaprenyl-6-methox 70.3 7.8 0.0002 18.3 4.3 34 1-39 1-35 (386)
442 COG0132 BioD Dethiobiotin synt 70.3 7.8 0.0002 18.3 4.5 34 5-38 3-37 (223)
443 PRK06550 fabG 3-ketoacyl-(acyl 70.3 7.9 0.0002 18.3 4.5 32 4-39 5-36 (237)
444 COG0451 WcaG Nucleoside-diphos 70.2 7.3 0.00019 18.6 4.0 30 7-40 3-32 (314)
445 PRK08303 short chain dehydroge 70.2 7.9 0.0002 18.3 5.1 36 1-39 2-39 (305)
446 PRK08221 anaerobic sulfite red 70.0 7.9 0.0002 18.3 4.1 38 154-201 80-117 (263)
447 TIGR00861 MIP MIP family chann 69.9 2.6 6.7E-05 21.6 1.7 23 11-33 68-92 (258)
448 cd06183 cyt_b5_reduct_like Cyt 69.9 8 0.0002 18.3 4.8 36 187-227 107-144 (234)
449 TIGR02482 PFKA_ATP 6-phosphofr 69.8 8 0.0002 18.3 7.0 132 7-151 3-143 (302)
450 PRK01390 murD UDP-N-acetylmura 69.8 8 0.0002 18.2 6.5 31 4-40 9-40 (457)
451 PRK06101 short chain dehydroge 69.7 8.1 0.00021 18.2 4.4 31 5-39 2-32 (241)
452 PRK06196 oxidoreductase; Provi 69.6 8.1 0.00021 18.2 4.5 33 5-40 26-58 (316)
453 TIGR02076 pyrH_arch uridylate 69.5 5.1 0.00013 19.6 3.1 43 93-138 36-82 (232)
454 PRK05867 short chain dehydroge 69.5 8.1 0.00021 18.2 4.9 31 5-39 10-40 (253)
455 cd01977 Nitrogenase_VFe_alpha 69.3 8.2 0.00021 18.2 7.9 26 258-285 357-382 (415)
456 cd02065 B12-binding_like B12 b 68.9 7.1 0.00018 18.6 3.7 30 13-42 8-37 (125)
457 PRK06988 putative formyltransf 68.8 8.4 0.00021 18.1 5.5 95 1-118 1-98 (313)
458 TIGR02418 acolac_catab acetola 68.8 7.8 0.0002 18.3 3.9 62 204-272 217-281 (553)
459 PRK12481 2-deoxy-D-gluconate 3 68.7 8.4 0.00022 18.1 5.1 35 4-41 7-41 (251)
460 PRK06475 salicylate hydroxylas 68.6 8.5 0.00022 18.1 4.1 29 5-38 3-31 (400)
461 KOG0029 consensus 68.4 8.5 0.00022 18.1 4.6 32 3-39 14-45 (501)
462 PRK08267 short chain dehydroge 68.4 8.6 0.00022 18.1 4.5 34 5-43 2-35 (258)
463 PRK11761 cysM cysteine synthas 68.2 8.6 0.00022 18.0 4.3 31 92-122 60-92 (296)
464 PRK00192 mannosyl-3-phosphogly 68.1 8.7 0.00022 18.0 4.7 43 1-43 1-49 (275)
465 cd06209 BenDO_FAD_NAD Benzoate 68.0 8.7 0.00022 18.0 4.7 35 187-226 105-140 (228)
466 COG2185 Sbm Methylmalonyl-CoA 68.0 8.4 0.00021 18.1 3.9 36 4-39 12-47 (143)
467 PRK07453 protochlorophyllide o 67.9 8.7 0.00022 18.0 5.0 36 1-40 1-38 (322)
468 cd01967 Nitrogenase_MoFe_alpha 67.9 8.7 0.00022 18.0 5.6 25 259-285 355-379 (406)
469 TIGR03466 HpnA hopanoid-associ 67.8 8.8 0.00022 18.0 4.6 31 6-40 2-32 (328)
470 COG4221 Short-chain alcohol de 67.8 8.8 0.00022 18.0 5.0 40 1-44 1-41 (246)
471 PRK07109 short chain dehydroge 67.8 8.8 0.00022 18.0 4.9 32 5-39 8-39 (338)
472 COG1090 Predicted nucleoside-d 67.7 6.7 0.00017 18.8 3.4 30 9-41 2-31 (297)
473 COG1018 Hmp Flavodoxin reducta 67.6 8.7 0.00022 18.0 3.9 39 186-229 112-150 (266)
474 PRK00843 egsA NAD(P)-dependent 67.3 9 0.00023 17.9 7.4 38 84-121 79-117 (351)
475 cd01968 Nitrogenase_NifE_I Nit 67.3 9 0.00023 17.9 8.5 26 258-285 355-380 (410)
476 pfam02056 Glyco_hydro_4 Family 67.1 7.6 0.00019 18.4 3.6 10 242-251 136-145 (183)
477 TIGR03172 probable selenium-de 66.9 9.1 0.00023 17.9 4.2 35 7-43 2-36 (232)
478 PRK10684 HCP oxidoreductase, N 66.8 9.2 0.00023 17.8 4.3 16 225-240 210-226 (335)
479 KOG1430 consensus 66.5 9.3 0.00024 17.8 4.9 34 1-38 1-36 (361)
480 TIGR01829 AcAcCoA_reduct aceto 66.3 7.6 0.00019 18.4 3.4 42 6-50 1-46 (244)
481 PRK06555 pyrophosphate--fructo 66.3 9.4 0.00024 17.8 7.5 47 1-47 1-49 (403)
482 cd06188 NADH_quinone_reductase 66.2 9.4 0.00024 17.8 4.3 38 186-226 152-189 (283)
483 TIGR02622 CDP_4_6_dhtase CDP-g 65.9 9.5 0.00024 17.7 4.7 114 3-134 3-116 (361)
484 PRK08340 glucose-1-dehydrogena 65.9 9.6 0.00024 17.7 4.3 30 6-39 2-31 (259)
485 PRK07074 short chain dehydroge 65.6 9.7 0.00025 17.7 4.5 35 4-43 2-36 (256)
486 cd06186 NOX_Duox_like_FAD_NADP 65.5 6.7 0.00017 18.8 3.0 42 187-229 109-151 (210)
487 PRK08674 bifunctional phosphog 65.5 9.7 0.00025 17.7 7.4 25 238-263 209-233 (328)
488 COG0569 TrkA K+ transport syst 65.4 9.7 0.00025 17.7 4.1 92 5-121 1-97 (225)
489 PRK13896 cobyrinic acid a,c-di 65.4 8.6 0.00022 18.1 3.5 34 5-38 2-36 (432)
490 PRK08233 hypothetical protein; 65.4 6.4 0.00016 18.9 2.9 26 3-28 1-27 (182)
491 PRK04965 nitric oxide reductas 65.3 8.5 0.00022 18.1 3.5 35 1-42 1-37 (378)
492 TIGR01278 DPOR_BchB light-inde 65.3 9.8 0.00025 17.6 6.1 49 274-329 304-358 (562)
493 PRK06027 purU formyltetrahydro 65.2 9.8 0.00025 17.6 5.9 34 1-37 2-35 (285)
494 cd06191 FNR_iron_sulfur_bindin 65.2 8.1 0.00021 18.2 3.4 38 186-227 104-141 (231)
495 PRK06249 2-dehydropantoate 2-r 65.1 9.9 0.00025 17.6 5.0 37 1-43 1-39 (313)
496 PRK05480 uridine kinase; Provi 65.1 8.7 0.00022 18.0 3.5 36 1-38 2-38 (209)
497 PRK06851 hypothetical protein; 65.0 9.9 0.00025 17.6 4.5 35 5-39 31-66 (368)
498 PTZ00318 NADH dehydrogenase; P 65.0 8.5 0.00022 18.1 3.5 32 4-40 10-41 (514)
499 PRK07791 short chain dehydroge 65.0 9.9 0.00025 17.6 4.7 34 1-37 1-35 (285)
500 PRK07984 enoyl-(acyl carrier p 64.8 10 0.00025 17.6 5.1 33 3-38 5-38 (262)
No 1
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=100.00 E-value=0 Score=660.35 Aligned_cols=357 Identities=39% Similarity=0.606 Sum_probs=332.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 8769998788525620799999999965983999957237-676244468751687525656533123321110001211
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
+|||+|+|||||||++||+|++++|+++|++|.|+++.++ +..+.+..+..++.++..++++++.+..+..++.+++++
T Consensus 1 mkkI~i~~GGTGGHi~Palala~~L~~~g~ev~~ig~~~g~E~~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 80 (359)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLWLGTKRGMEARLVPKAGIEFHFIPIGGLRRKGSLANLKAPFKLLKGV 80 (359)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98899995886899999999999998387989999788268654044149838997778889878799999999999999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 01355542034442431265321024788862341101221532001567788999998741343222235566732530
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTG 162 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G 162 (369)
++++++++++|||+|||||||+|+|+++||+++|||++|||||++||++||++++++++++++|+++...++.+|+.+||
T Consensus 81 ~~~~~il~~~kPd~Vig~GGY~s~P~~laA~l~~iP~iiHEqN~v~G~aNr~l~~~a~~i~~~f~~~~~~~~~~k~~~~G 160 (359)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYVSGPAGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAFEETPKAFPKAKAVVTG 160 (359)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCEEEECCHHHHHCCCCCCEEEEC
T ss_conf 99999999749999997897412899999998299869974542356233788885097899775554037624559967
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 44432456543334433114478148986304322210233344544323202466067762025516776532210011
Q gi|254781097|r 163 NPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGC 242 (369)
Q Consensus 163 ~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 242 (369)
+|||++|.+......+.. .+++++|||+||||||..||+.+.+++..+.. ...++|+||||+.+.+.+++.|.+.+.
T Consensus 161 ~PvR~~~~~~~~~~~~~~-~~~~~~iLV~GGSqGa~~~N~~v~~~l~~l~~--~~~~~i~~~~G~~~~~~~~~~~~~~~~ 237 (359)
T PRK00726 161 NPVREEILALPAPAFRLA-GRGPPTLLVVGGSQGARVLNEAVPEALALLPE--ELRIQVIHQTGKKDLEEVRAAYAELGV 237 (359)
T ss_pred CCCCHHHHCCCHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 840277661433333210-47885799976852047899999999998765--259089998284039999999986599
Q ss_pred CCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHH
Q ss_conf 11345444451444300448997254202333455296048753355248989998999998898899800019989999
Q gi|254781097|r 243 KATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLA 322 (369)
Q Consensus 243 ~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~ 322 (369)
++++++|++||+++|++||++||||||+|++|++++|+|+|+||||+++||||++||+++++.|+|++++|+++|++.|.
T Consensus 238 ~~~v~~f~~~m~~~~~~aDlvIsRaGa~Ti~E~~~~g~P~IlIP~p~a~~~HQ~~NA~~l~~~gaa~~i~e~~~~~~~L~ 317 (359)
T PRK00726 238 NAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAKLIPQSDLTPERLA 317 (359)
T ss_pred CEEECCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 76975752318998740889998898326999998289869983687775389999999997899999531469999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999861899999999999852783279999999999998
Q gi|254781097|r 323 EELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 323 ~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~ 363 (369)
+.|.++++||+++++|++++++++.|||+++|+++|+++++
T Consensus 318 ~~i~~ll~d~~~l~~m~~~~~~~~~~~a~~~i~~~i~~~~~ 358 (359)
T PRK00726 318 EALLELLSDRERLEAMAEAARALGIPDAAERLADLIEKLAR 358 (359)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999986999999999999724897899999999999853
No 2
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=0 Score=632.10 Aligned_cols=349 Identities=36% Similarity=0.553 Sum_probs=323.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 69998788525620799999999965983999957237-67624446875168752565653312332111000121101
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
||+|+|||||||++||+|++++|+++||+|.|+++.++ +..+.+..+..++.++..++++++.+..+..++.++.++.+
T Consensus 1 ki~i~~GGTGGHi~Palala~~L~~~g~~V~~i~~~~g~e~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98999478589999999999999978798999987836864234413994899768887888739999999999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
Q ss_conf 35554203444243126532102478886234110122153200156778899999874134322223556673253044
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNP 164 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G~P 164 (369)
+.++++++|||+||+||||+|+|+++||++++||++|||||++||++||++++++++++++|+++.+..+.+|+.+||+|
T Consensus 81 ~~~~l~~~kPd~vi~~GGY~s~P~~laA~~~~iP~~ihEqN~v~G~anr~l~~~a~~i~~~f~~~~~~~~~~k~~~vG~P 160 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVALSFPETAKYFPKDKAVVTGNP 160 (350)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCEEEECCHHHHHCCCCCCEEEECCC
T ss_conf 99999964999999889810389999999729985565677225713233210039899857565412466777996885
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 43245654333443311447814898630432221023334454432320246606776202551677653221001111
Q gi|254781097|r 165 IRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKA 244 (369)
Q Consensus 165 vR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 244 (369)
||++|.+.+.........+++++|||+||||||..||+.+.+++..+.+ ..++|+|+||+.+.+++.+.|...+.++
T Consensus 161 vR~~~~~~~~~~~~~~~~~~~~~iLv~GGSqGa~~ln~~v~~~~~~l~~---~~~~ii~~~G~~~~~~~~~~~~~~~~~~ 237 (350)
T cd03785 161 VREEILALDRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR---KRLQVIHQTGKGDLEEVKKAYEELGVNY 237 (350)
T ss_pred CCHHHHCCCHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH---CCCEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf 2266641434467527898973999984872047899999999998764---4968999838400899999998669988
Q ss_pred CCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHH
Q ss_conf 34544445144430044899725420233345529604875335524898999899999889889980001998999999
Q gi|254781097|r 245 TLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEE 324 (369)
Q Consensus 245 ~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~ 324 (369)
++++|++||+++|++||++|||||++|++|++++|+|+|+||||+++||||++||+++++.|+|++++|+++|++.|.+.
T Consensus 238 ~v~~f~~~m~~~l~~aDlvIsraGa~Ti~E~~~~g~P~IlIP~p~a~d~hQ~~NA~~l~~~g~a~~i~e~~~~~~~L~~~ 317 (350)
T cd03785 238 EVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred EEECHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 99251889999986198899779842599999819986998458777665999999999889999950024999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999861899999999999852783279999999
Q gi|254781097|r 325 LCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDL 357 (369)
Q Consensus 325 i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~ 357 (369)
|.++++||+++++|++++++++.|+|+++|+++
T Consensus 318 i~~ll~d~~~l~~m~~~~~~~~~~~a~~~i~~~ 350 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSLARPDAAERIADL 350 (350)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 999987999999999998745897999998459
No 3
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=100.00 E-value=0 Score=628.48 Aligned_cols=345 Identities=20% Similarity=0.316 Sum_probs=306.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 769998788525620799999999965983999957237-6762444687516875256565331233211100012110
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
|||+|+|||||||++||+|++++|+++|++|.|+++.++ +..+.+..+..++.+...++++...+.+++.++.++++++
T Consensus 2 kkIii~~GGTGGHi~Palala~~L~~~~~~v~~ig~~~g~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPKLIEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVM 81 (352)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87999958758889999999999984899599998896054304450499689954477278552999999999999999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
Q ss_conf 13555420344424312653210247888623411012215320015677889999987413432222355667325304
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGN 163 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G~ 163 (369)
+++++++++|||+|||||||+|+|+++||+++|||++|||||++||++||+++++++++|++|+++.+.++.+|+++||+
T Consensus 82 ~s~~il~~~kPd~Vig~GGY~S~P~~lAA~ll~iP~~ihEqNav~G~aNr~l~~~a~~i~~~f~~~~~~~~~~k~~~tGn 161 (352)
T PRK12446 82 DAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTFEEAAKHLPKEKVIYTGS 161 (352)
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCEEECCHHHHHCCCCCCEEECCC
T ss_conf 99999996399999974987779999999985999699887467778999999870712899624552088673687488
Q ss_pred CCCHHHHHHHHHH-HHHHC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 4432456543334-43311-447814898630432221023334454432320246606776202551677653221001
Q gi|254781097|r 164 PIRSSLIKMKDIP-YQSSD-LDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG 241 (369)
Q Consensus 164 PvR~~~~~~~~~~-~~~~~-~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 241 (369)
|||++|.+..... ..... .+++++|||+||||||..||+.+++++..+. ..++|+||||+.+.++..+..
T Consensus 162 PvR~~i~~~~~~~~~~~~~~~~~~~~iLV~GGSqGA~~iN~~v~~~l~~l~----~~~~iih~~g~~~~~~~~~~~---- 233 (352)
T PRK12446 162 PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL----LKYQIVHLCGKGNLDDSLQNK---- 233 (352)
T ss_pred CCCHHHHCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH----HCCEEEEECCCCCHHHHHHCC----
T ss_conf 620765403556678754888778579997375117999999999999985----197799992877156898501----
Q ss_pred CCCCCCCCC-CCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHHHHCCCEEEEEHHCCCHH
Q ss_conf 111345444-45144430044899725420233345529604875335-5248989998999998898899800019989
Q gi|254781097|r 242 CKATLACFF-KDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYP-HSVDQDQLHNAYYLQEGGGAKVITENFLSPE 319 (369)
Q Consensus 242 ~~~~v~~f~-~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p-~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~ 319 (369)
.++..+.|+ +||+++|++||||||||||+|++|++++|+|+|+|||| +++||||++||++|++.|+|++++|+++|++
T Consensus 234 ~~~~~~~~~~~~m~~~~~~aDlvIsRAGAsTiaEl~~~g~PsIlIP~p~~a~~nHQ~~NA~~l~~~gaa~vi~e~~l~~~ 313 (352)
T PRK12446 234 EGYRQFEYVHGELPDILAMTDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVN 313 (352)
T ss_pred CCCEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 36076572455499999849889977870289999982998899628987775759999999997798899641469999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999861899999999999852783279999999999
Q gi|254781097|r 320 RLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 320 ~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
.|.+.|.+++.|++ +|++++++++.|+|+++|+|.|+|
T Consensus 314 ~L~~~i~~l~~n~~---~~~~~~kk~~~p~aa~~I~d~i~e 351 (352)
T PRK12446 314 SLIKHVEELSHNNE---KYKTALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHHHHHHHHHHCHH---HHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 99999999984999---999999850795599999999851
No 4
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=590.78 Aligned_cols=355 Identities=36% Similarity=0.568 Sum_probs=328.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCE-EEEE-ECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 769998788525620799999999965983-9999-57237676244468751687525656533123321110001211
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYA-VYLI-TDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~-v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
++|++++||||||++||+|++++|.++|++ +.++ ++.+.+.++.+.....++.+...++++++.+.+++.++++++++
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGV 80 (357)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 93999966776657799999999996097179994466344432054567079998646556565066788699999999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 01355542034442431265321024788862341101221532001567788999998741343222235566732530
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTG 162 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G 162 (369)
.+++++|+++|||+|+|||||+|+|+++||+.++||+++||||++||++||++++++++|+++|+......+..+.++||
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f~~~~~~~~~~~~~~tG 160 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAFPKLEAGVKPENVVVTG 160 (357)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHEEEEEECCCHHHCCCCCCCEEEEC
T ss_conf 99999999709989995798634649999861699879997346642656453230125771251121157866437857
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 44432456543334433114478148986304322210233344544323202466067762025516776532210011
Q gi|254781097|r 163 NPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGC 242 (369)
Q Consensus 163 ~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 242 (369)
+|||++|.+......+.....++++|||+||||||..||+.+++++..+.+ .++|+|+||+++.+++...|...+.
T Consensus 161 ~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~----~~~v~~~~G~~~~~~~~~~~~~~~~ 236 (357)
T COG0707 161 IPVRPEFEELPAAEVRKDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN----RIQVIHQTGKNDLEELKSAYNELGV 236 (357)
T ss_pred CCCCHHHHCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC----CEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 846366521635544320378984899988824279999999999872121----6699997697369999998720681
Q ss_pred CCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHH
Q ss_conf 11345444451444300448997254202333455296048753355248989998999998898899800019989999
Q gi|254781097|r 243 KATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLA 322 (369)
Q Consensus 243 ~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~ 322 (369)
+++.+|++||+++|++||||||||||+|++|++++|+|+|+||+|.++||||++||++|++.|+|++++|.++|++.+.
T Consensus 237 -~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~ 315 (357)
T COG0707 237 -VRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLA 315 (357)
T ss_pred -EEEEEHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf -8997667539999986458986786649999999589889965898764418999999996797699425547999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999998618999999999998527832799999999999985
Q gi|254781097|r 323 EELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAHV 364 (369)
Q Consensus 323 ~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~~ 364 (369)
+.|.+++++|+++++|++++++++.|+|+++++++++++++.
T Consensus 316 ~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~~~ 357 (357)
T COG0707 316 ELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLALAKK 357 (357)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 999999659899999999998717987899999999998509
No 5
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=100.00 E-value=0 Score=590.53 Aligned_cols=354 Identities=34% Similarity=0.522 Sum_probs=326.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEEECHHH-HHHHCC-CCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99887699987885256207999999999659--83999957237-676244-468751687525656533123321110
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRG--YAVYLITDRRA-RSFITD-FPADSIYEIVSSQVRFSNPFVFWNSLV 76 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g--~~v~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (369)
|++.++|+|+|||||| ++||+|++++|++++ .+|.|++..++ +..+.+ ..+..++.+...++++++.++++..++
T Consensus 2 ~~~~~~~~~~gGGTGG-~fPAlA~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~~~~~~~~ 80 (368)
T TIGR01133 2 MNKMKKVALAGGGTGG-IFPALAVAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGGLRRKGSKKLLKLPL 80 (368)
T ss_pred CCCCEEEEEECCCCCH-HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 9882289997278302-689999999999748936999850677500003432157417777401003655101467889
Q ss_pred -HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -0012110135554203444243126532102478886234-11012215320015677889999987413432222355
Q gi|254781097|r 77 -ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILR-IPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVL 154 (369)
Q Consensus 77 -~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~-iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~ 154 (369)
.+++++++++++|++++||+|+|||||+|+|+++||+++| ||++ +|||++||++|||++|+|++|+++|+++.+.++
T Consensus 81 ~~~~~~~~~a~~~l~~~~p~~v~G~GGY~s~P~~~AA~l~g~iP~~-~EQN~~pG~~Nk~ls~~A~~V~~~f~~~~~~~~ 159 (368)
T TIGR01133 81 LKLLKAVLQARRILKKFKPDVVVGFGGYVSGPAGLAAKLLGRIPLI-LEQNAVPGLTNKLLSRFAKRVLVSFPGAKKFFP 159 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHHHHHCEEEEECHHHHCCCC
T ss_conf 9999999999999860087479874736789999998766799489-861541257888878874431110513322676
Q ss_pred -CCCCEEEECCCCHHHHHHHHHHH--HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf -66732530444324565433344--331144781489863043222102333445443232024660677620255167
Q gi|254781097|r 155 -LRKIIVTGNPIRSSLIKMKDIPY--QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKE 231 (369)
Q Consensus 155 -~~k~~~~G~PvR~~~~~~~~~~~--~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~ 231 (369)
.+++.++|+|||+++...+.... +....+++.+|||+||||||..||+.+++++..|.+.. .+.++.++|+.+++
T Consensus 160 ~~~~~~~~g~pvr~~~~~~~~~~~~~~~~~~~~~~~ilv~GGSQGA~~lN~~vp~~~~~L~~~~--~~~~~~~~g~~~~~ 237 (368)
T TIGR01133 160 AAEKVVVVGNPVREEIRSLPAARARKRFKLRPGKLRILVLGGSQGAKILNELVPKALAKLAEKG--LILVIIQGGKGDLE 237 (368)
T ss_pred CCCCEEEECCHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC--CEEEEEECCHHHHH
T ss_conf 6675687014134543037825688862168998279996273768999999999998864016--52588876637799
Q ss_pred HHHHHHHHCC-CCCCCCCCCC--CCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHHHHHCCC
Q ss_conf 7653221001-1113454444--51444300448997254202333455296048753355248-989998999998898
Q gi|254781097|r 232 KVQKQYDELG-CKATLACFFK--DIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVD-QDQLHNAYYLQEGGG 307 (369)
Q Consensus 232 ~~~~~~~~~~-~~~~v~~f~~--~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~-~hQ~~NA~~l~~~G~ 307 (369)
.+...|.+.+ ....+..|.+ ||.+.|++|||+||||||+|++|++++|+|+||||||++++ +||++||+++++.|+
T Consensus 238 ~~~~~y~~~~l~~~~~~~f~~~~dm~~~y~~ADLvIsRAGA~T~~El~a~G~PaIliPyP~a~~r~~Q~~NA~~l~~~ga 317 (368)
T TIGR01133 238 KVKNVYSELGLVAAKITPFIDNEDMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAAKRDDQYYNAKFLEDAGA 317 (368)
T ss_pred HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99998521371022210377875799999874040023337899999971777376258754681789999999973446
Q ss_pred EEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 899800019989999999998618999999999998527832799999999
Q gi|254781097|r 308 AKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLV 358 (369)
Q Consensus 308 a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i 358 (369)
|++++|+++++++|.+.+.++..|+.+++.|+++++++..++|++++++.|
T Consensus 318 g~~~~q~~~~~e~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 368 (368)
T TIGR01133 318 GIVIEQKELLTEKLVSALLKLLKDPARLEEMAEAARKLAKPDAAKRIAEAL 368 (368)
T ss_pred CEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 546402204768999998741610899999999999861572779999949
No 6
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=100.00 E-value=0 Score=368.81 Aligned_cols=337 Identities=20% Similarity=0.227 Sum_probs=237.5
Q ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHH--HHCCCCCCCEEEE-ECCCCCCCC--------H
Q ss_conf 998876999878852-562079999999996598399995723767--6244468751687-525656533--------1
Q gi|254781097|r 1 MSENNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRRARS--FITDFPADSIYEI-VSSQVRFSN--------P 68 (369)
Q Consensus 1 M~~~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~--------~ 68 (369)
|++||||||.+++|| ||..+|.||+++|.++|++...+.|..... .+.+. ....|.. ........+ .
T Consensus 1 ~~~~kKVLILtas~G~GH~~AA~AL~e~l~~~~~~~v~v~D~~~~~~p~~~~~-~~~~Yl~~~~~~p~l~~~~Y~~~~~~ 79 (388)
T PRK13609 1 MIKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITDI-TKYLYLKSYTIGKELYRLFYYGVEKI 79 (388)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99899799997888827899999999999835998199985143027048889-98888888553588999999643222
Q ss_pred -HHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH-----HCCCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf -233211100012110135554203444243126532102478886-----23411012215320015677889999987
Q gi|254781097|r 69 -FVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGM-----ILRIPSMVHEQNVIMGKANRLLSWGVQII 142 (369)
Q Consensus 69 -~~~~~~l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~-----~l~iP~vihEqN~v~G~~nk~l~~~a~~v 142 (369)
.......+ ...+..+..++|++++||+||+| +|....+. .+.+|++.--.+.. .-.-|+++.+|++
T Consensus 80 ~~~~~~~~~-~~~~~~~l~~li~~~kPDvII~T-----~P~~~l~~lk~~~~~~iP~~tViTD~~--~H~~Wi~~~~D~y 151 (388)
T PRK13609 80 YDKKIASWY-ANFGRKRLKLLLQAEKPDIVINT-----FPIIAVPELKKQTGISIPVYNVLTDFC--VHKIWIHREVDRY 151 (388)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEC-----CCHHHHHHHHHHCCCCCCEEEEECCCC--CHHHHCCCCCCEE
T ss_conf 215678999-99979999999998295999988-----878999999984599998899947852--0464557899979
Q ss_pred HCCCCCCCC-----CCCCCCCEEEECCCCHHHHHHHH--HHHHHHCC-CCCCEEEEEECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 413432222-----35566732530444324565433--34433114-478148986304322-2102333445443232
Q gi|254781097|r 143 ARGLVSSQK-----KVLLRKIIVTGNPIRSSLIKMKD--IPYQSSDL-DQPFHLLVFGGSQGA-KVFSDIVPKSIALIPE 213 (369)
Q Consensus 143 ~~~~~~~~~-----~~~~~k~~~~G~PvR~~~~~~~~--~~~~~~~~-~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~ 213 (369)
+++.+++.+ +.+.+|+.++|+|||++|....+ ..+++.++ +++++||+||||+|. ..+.+. +..+..
T Consensus 152 ~Vase~~k~~l~~~Gv~~~kI~vtGiPVr~~F~~~~~k~~~r~~lgL~~d~~~vLimgGg~G~~g~i~~l----~~~L~~ 227 (388)
T PRK13609 152 FVATDHVKEVMVDIGVPAEQIVETGIPIRSSFELKINPDIIYNKYQLCKNKKILLIVAGAHGVLGNVKEL----CQSFMS 227 (388)
T ss_pred EECCHHHHHHHHHHCCCHHHEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH----HHHHHC
T ss_conf 9398999999998099888999889843878727588789999828998784799976601211479999----999745
Q ss_pred HCCCCCEEEEEECCCC--HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE-ECCCC
Q ss_conf 0246606776202551--67765322100111134544445144430044899725420233345529604875-33552
Q gi|254781097|r 214 MQRKRLVIMQQVREDD--KEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV-PYPHS 290 (369)
Q Consensus 214 ~~~~~~~v~~~~g~~~--~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI-P~p~a 290 (369)
...++++++||.+. ++++.+.....+.++++++|+++|+++|++||++|||||+.|++|++++|+|+|++ |+|
T Consensus 228 --~~~~qiiVVcGrN~~L~~~L~~~~~~~~~~v~vlGf~~~~~~~~~~~d~~i~k~Gg~t~~E~~~~~~P~i~~~~~p-- 303 (388)
T PRK13609 228 --VPDLQVVVVCGKNEALKQDLVGLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALQVPVILYKPVP-- 303 (388)
T ss_pred --CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEECCCCC--
T ss_conf --8992499990899899999998875079946995045209999985759995786458999999489989706899--
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4898999899999889889980001998999999999861899999999999852783279999999999
Q gi|254781097|r 291 VDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 291 ~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
+||+.||++|++.|+|+.+. +++.+.+.+..|++||+++++|++++++++.|+||++|++.|++
T Consensus 304 --gqe~~N~~~~~~~g~~~~~~----~~~~~~~~~~~ll~~~~~l~~m~~~~~~~~~p~aa~~I~~~il~ 367 (388)
T PRK13609 304 --GQENENAMYFERKGAAVVIR----DDSEVFAKTEALLQDDMKLLQMKEAMKSIYLPEPADHIVDTILA 367 (388)
T ss_pred --CHHHHHHHHHHHCCCEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf --61677799999789879979----99999999999976999999999999862798589999999998
No 7
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=100.00 E-value=0 Score=355.33 Aligned_cols=343 Identities=16% Similarity=0.237 Sum_probs=238.2
Q ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCE-EEEEE-CHHHHHHHCCCCC---CCEEEE-----ECC--CCCCCC
Q ss_conf 998876999878852-5620799999999965983-99995-7237676244468---751687-----525--656533
Q gi|254781097|r 1 MSENNVILLVAGGTG-GHVFPAVALSHELKNRGYA-VYLIT-DRRARSFITDFPA---DSIYEI-----VSS--QVRFSN 67 (369)
Q Consensus 1 M~~~~~ili~~gGTG-GHi~palala~~L~~~g~~-v~~~~-~~~~~~~~~~~~~---~~~~~~-----~~~--~~~~~~ 67 (369)
+++||||||.++++| ||...|.||.++|.+.+.+ +.++. |... +..+... ...|.. +.. .+....
T Consensus 2 ~~~~KKVLILtas~G~GH~~AA~AL~~~l~~~~~~~~~v~~~D~~~--~~~p~~~~~~~~~Yl~~~k~~p~ly~~~Y~~~ 79 (391)
T PRK13608 2 VTQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFM--EAHPILTSICKKWYINSFKYFRNMYKGFYYSR 79 (391)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9888879999689883799999999999985099966999913787--64841888899999999999999999898548
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH-----HCCCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 1233211100012110135554203444243126532102478886-----23411012215320015677889999987
Q gi|254781097|r 68 PFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGM-----ILRIPSMVHEQNVIMGKANRLLSWGVQII 142 (369)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~-----~l~iP~vihEqN~v~G~~nk~l~~~a~~v 142 (369)
+....+.++. +.+..+..++|++++||+||+| | |..+.+. .+++|++..-.+.. .-..|+++.+|.+
T Consensus 80 ~~~~~~~~~~-~~~~~kl~~~L~~~kPDvII~T--~---P~~~~s~lk~~~~~~iP~~tViTD~~--~H~~W~~~~~D~y 151 (391)
T PRK13608 80 PDKLDKCFYK-YYGLNKLINLLIKEKPDLILLT--F---PTPVMSVLTEQFNINIPVATVMTDYR--LHKNWITPYSTRY 151 (391)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHCCCEEEEC--C---HHHHHHHHHHHCCCCCCEEEEECCHH--HHHHHCCCCCCEE
T ss_conf 4067799999-9889999999998492999999--8---28999999982499998899958713--3230368999979
Q ss_pred HCCCCCCCC-----CCCCCCCEEEECCCCHHHHHHHHHH--HHHHCCC-CCCEEEEEECCCCCCC-HHHHHHHHHHHHHH
Q ss_conf 413432222-----3556673253044432456543334--4331144-7814898630432221-02333445443232
Q gi|254781097|r 143 ARGLVSSQK-----KVLLRKIIVTGNPIRSSLIKMKDIP--YQSSDLD-QPFHLLVFGGSQGAKV-FSDIVPKSIALIPE 213 (369)
Q Consensus 143 ~~~~~~~~~-----~~~~~k~~~~G~PvR~~~~~~~~~~--~~~~~~~-~~~~ILv~GGS~Ga~~-ln~~v~~~~~~l~~ 213 (369)
+++.+++.+ +.+.+++.++|+|||++|....+.. .++.+++ ++++||+||||.|... +...+. .+.+
T Consensus 152 ~Va~~~~~~~l~~~Gi~~~kI~vtGIPV~~~F~~~~~~~~~~~~~~l~~~~~~iLv~gG~~G~~~~~~~~i~----~ll~ 227 (391)
T PRK13608 152 YVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPINQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMIT----DILA 227 (391)
T ss_pred EECCHHHHHHHHHCCCCHHHEEEEEEECCHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH----HHHH
T ss_conf 969999999999849997688998343586773755678999971899777689996886310246999999----9971
Q ss_pred HCCCCCEEEEEECCCC--HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE-ECCCC
Q ss_conf 0246606776202551--67765322100111134544445144430044899725420233345529604875-33552
Q gi|254781097|r 214 MQRKRLVIMQQVREDD--KEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV-PYPHS 290 (369)
Q Consensus 214 ~~~~~~~v~~~~g~~~--~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI-P~p~a 290 (369)
....++++++||++. ...++..+.. ..++.+++|+++|+++|.+||++||+|||.|++|++++|+|+|+. |+|
T Consensus 228 -~~~~~qivvvcGrN~~L~~~L~~~~~~-~~~v~vlG~t~~m~~lM~asDllITKpGGlT~sEAla~~lPmii~~piP-- 303 (391)
T PRK13608 228 -KSANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMITKPGGITITEGFARCIPMIFLNPAP-- 303 (391)
T ss_pred -CCCCCEEEEEECCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEECCCCC--
T ss_conf -599965999908999999999976245-9976997070519999986529996786679999999589989757999--
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 48989998999998898899800019989999999998618999999999998527832799999999999985553
Q gi|254781097|r 291 VDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAHVKVD 367 (369)
Q Consensus 291 ~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~~k~~ 367 (369)
+|++.||.||++.|+|..+. |++++.+.|..|++||++++.|++|++++..|+|+.+|++.+++|.+...+
T Consensus 304 --GQEe~Na~~l~~~G~a~~~~----~~~~~~~~v~~l~~~~~~l~~m~~~~~~~~~p~a~~~I~~~~~~l~~~~~~ 374 (391)
T PRK13608 304 --GQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred --CCHHHHHHHHHHCCCEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf --74466799999689768859----999999999998559999999999999717996299999999998724256
No 8
>pfam04101 Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.
Probab=100.00 E-value=1.8e-39 Score=295.49 Aligned_cols=167 Identities=32% Similarity=0.491 Sum_probs=158.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEEC
Q ss_conf 48986304322210233344544323202466067762025516776532210011113454444514443004489972
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICR 266 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsr 266 (369)
+|||+||||||..||+.+.+.+..+.+. ...+.|+||||+.+++.+...|...+.++.+++|++||+++|++||++|||
T Consensus 1 TiLV~GGSqGa~~lN~~v~~~~~~~~~~-~~~~~vihq~G~~~~~~~~~~~~~~~~~~~~~~f~~~m~~~~~~adlvIsR 79 (167)
T pfam04101 1 TIFVTGGSQGAQALNRLVLEVDPLLELK-GIEYQVLHQTGKSDYEPVNCKYSKFGINVEVFPFIDNMAEYIKAADLVISR 79 (167)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHC
T ss_conf 9899954488999999999999998753-998299998597358999999860599889971255599999966068865
Q ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 54202333455296048753355248989998999998898899800019989999999998618999999999998527
Q gi|254781097|r 267 SGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG 346 (369)
Q Consensus 267 aG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~ 346 (369)
||++|++|++++|+|+|+||+|+++||||++||++|++.|+|++++|+++|++.|.+.|.+++.|+++++.|++++++++
T Consensus 80 aGa~Ti~E~~~~g~P~IliP~p~~~~~hQ~~NA~~l~~~gaa~~i~e~~~~~~~L~~~i~~l~~~~~~l~~m~~~a~~~~ 159 (167)
T pfam04101 80 AGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVEALLKLLLKPLRLYEMNKAAKGSR 159 (167)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 76227999999489989970765565639999999998799899642679999999999999869999999999998448
Q ss_pred CCHHHHHH
Q ss_conf 83279999
Q gi|254781097|r 347 KPQAVLML 354 (369)
Q Consensus 347 ~~~aa~~i 354 (369)
.|+|+++|
T Consensus 160 ~~da~~~i 167 (167)
T pfam04101 160 LKDAIKRL 167 (167)
T ss_pred CCCHHHCC
T ss_conf 94845419
No 9
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.5e-33 Score=249.65 Aligned_cols=338 Identities=18% Similarity=0.154 Sum_probs=208.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCC------------CCCCHHHHHH
Q ss_conf 6999878852562079999999996598399995723767624446875168752565------------6533123321
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQV------------RFSNPFVFWN 73 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 73 (369)
+|+|+++||+||++|+++||++|.++||+|+|++.......+.. .+..++.+..... ..........
T Consensus 2 ril~~~~~~~GH~~P~l~lA~~L~~rGh~Vt~~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH-CCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 79998798575899999999999988995999938788889997-79868876987777642111233334540557999
Q ss_pred HHHH----CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCC---------CCHHHH--------
Q ss_conf 1100----0121101355542034442431265321024788862341101221532---------001567--------
Q gi|254781097|r 74 SLVI----LWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNV---------IMGKAN-------- 132 (369)
Q Consensus 74 ~l~~----~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~---------v~G~~n-------- 132 (369)
.... ....+.....++++++||+||+. +.+.++..+|..++||++.+-... ..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d--~~~~~~~~~A~~~giP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 158 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDWGPDLVVAD--PLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYALLE 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC--CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999999999999616799889989--70789999999929998999566654533256741024431045555
Q ss_pred ---------HHHHHHHHHHHCCCCC---------------CCCCC---CCCCCEEEECCCCHHHHH-HHHHH-HHHHCCC
Q ss_conf ---------7889999987413432---------------22235---566732530444324565-43334-4331144
Q gi|254781097|r 133 ---------RLLSWGVQIIARGLVS---------------SQKKV---LLRKIIVTGNPIRSSLIK-MKDIP-YQSSDLD 183 (369)
Q Consensus 133 ---------k~l~~~a~~v~~~~~~---------------~~~~~---~~~k~~~~G~PvR~~~~~-~~~~~-~~~~~~~ 183 (369)
+++....+........ ..... ........|.+....-.. ..... ....+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 237 (401)
T cd03784 159 AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLA-A 237 (401)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHCC-C
T ss_conf 555554578899999998399965420004784001212555565766444551227887777777888856775135-6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78148986304322210233344544323202466067762025516776532210011113454444514443004489
Q gi|254781097|r 184 QPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 184 ~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlv 263 (369)
.+..|+|..||++.....+.....+..+... ...+++.++..... ....+.|+.+.+|++ +.++|..+|++
T Consensus 238 ~~~vVyvs~GS~~~~~~~~~~~~~~~~l~~~---~~~~i~~~~~~~~~-----~~~~~~nv~i~~~~p-q~~iL~~~~~~ 308 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLG-----AEDLPDNVRVVDFVP-HDWLLPRCAAV 308 (401)
T ss_pred CCCEEEEECCCCHHCCHHHHHHHHHHHHHHC---CCEEEEEECCCCCC-----CCCCCCCEEEECCCC-HHHHHHHCCEE
T ss_conf 9976999788301028999999999999966---98499996787666-----556899789956789-89997437999
Q ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 97254202333455296048753355248989998999998898899800019989999999998618999999999998
Q gi|254781097|r 264 ICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVS 343 (369)
Q Consensus 264 IsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~ 343 (369)
|||+|.+|++|++++|+|+|++|+- . +|..||..+++.|+|+.++.+++|++.|.+++.++|+|+.++ +.++.++
T Consensus 309 ItHgG~~s~~Eal~~GvP~v~~P~~--~--DQ~~nA~rv~~~G~G~~l~~~~~t~e~l~~av~~lL~~~~~~-~a~~~~~ 383 (401)
T cd03784 309 VHHGGAGTTAAALRAGVPQLVVPFF--G--DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPPSRR-RAAALLR 383 (401)
T ss_pred EECCCHHHHHHHHHCCCCEEECCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_conf 9668758999999819998953775--5--689999999987971277835699999999999994899999-9999999
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 527832799999999999
Q gi|254781097|r 344 MKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 344 ~~~~~~aa~~i~~~i~~l 361 (369)
++...+++.+.+|+||++
T Consensus 384 ~~~~~~g~~~aa~~ie~l 401 (401)
T cd03784 384 RIREEDGVPSAADVIERL 401 (401)
T ss_pred HHHHCCCHHHHHHHHHCC
T ss_conf 987558889999998439
No 10
>TIGR01426 MGT glycosyltransferase, MGT family; InterPro: IPR006326 These sequences belong to the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. ; GO: 0016758 transferase activity transferring hexosyl groups, 0016999 antibiotic metabolic process.
Probab=99.97 E-value=7.2e-31 Score=235.34 Aligned_cols=325 Identities=18% Similarity=0.177 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC-CCCCEEEEECCC---CCCC-----CH--HHHHHHHHHCCC---
Q ss_conf 256207999999999659839999572376762444-687516875256---5653-----31--233211100012---
Q gi|254781097|r 15 GGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF-PADSIYEIVSSQ---VRFS-----NP--FVFWNSLVILWK--- 80 (369)
Q Consensus 15 GGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~-----~~--~~~~~~l~~~~~--- 80 (369)
-|||+|.|+|++||.+|||+|+|.+.......+..- .....|.....+ .... +. -.....+..++.
T Consensus 6 ~GHVNPtL~v~~ELV~RGh~VTY~~t~ef~~~v~~~GA~~~~Y~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~ll~~~~ 85 (429)
T TIGR01426 6 YGHVNPTLGVVEELVARGHRVTYATTEEFADAVAAAGAEALLYGSALEGDPDMPREEESAENMTEEELLDIIEKLLDESL 85 (429)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 57657657899999845974663178889999997298588848677765456510046210323458899999999999
Q ss_pred -CCHHHHHHHHHCCCCEEEECCCCCC--HHHHHHHHHCCCCCEE----------ECC-C-------------CCCHH---
Q ss_conf -1101355542034442431265321--0247888623411012----------215-3-------------20015---
Q gi|254781097|r 81 -AFIASLRLIKKLKPNVVVGFGGYHS--ISPLLAGMILRIPSMV----------HEQ-N-------------VIMGK--- 130 (369)
Q Consensus 81 -~~~~~~~ii~~~kPDvVi~tGGy~s--~P~~iaA~~l~iP~vi----------hEq-N-------------~v~G~--- 130 (369)
.+-+....+++.+||+|+-- .+| .++-+.|+.|++|++- |++ + +..+.
T Consensus 86 ~~Lp~l~~~~~~d~pDlv~yD--~a~~l~~G~llA~~l~~P~i~~~p~fA~~~~~~~~~~avqdPtadrGeea~~p~~~~ 163 (429)
T TIGR01426 86 SLLPQLEEAYKGDRPDLVVYD--IATPLWAGRLLARKLDVPVISSFPTFASNEEFEEMQRAVQDPTADRGEEALSPIGED 163 (429)
T ss_pred HHHHHHHHHHCCCCCCEEEEC--HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 999999997148998789853--131568999987650788689865455536514567743476655542015788825
Q ss_pred -------HHH------------HHHHHHH---HHHCC--------CCC-------CCC------CCCCCC-CEEEECCC-
Q ss_conf -------677------------8899999---87413--------432-------222------355667-32530444-
Q gi|254781097|r 131 -------ANR------------LLSWGVQ---IIARG--------LVS-------SQK------KVLLRK-IIVTGNPI- 165 (369)
Q Consensus 131 -------~nk------------~l~~~a~---~v~~~--------~~~-------~~~------~~~~~k-~~~~G~Pv- 165 (369)
.-| +..++.. ...+. .+. +.+ ....++ ..|||+|+
T Consensus 164 ~~~~~~~~~r~seqmelfgL~~y~~~~~~ll~~~~~~~~p~~~l~~~~~dlnlv~~pk~Fq~~~e~fDd~tf~FVGP~~g 243 (429)
T TIGR01426 164 SLEEAAIAERFSEQMELFGLAEYVARLSALLEEHGITAPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDRTFKFVGPCIG 243 (429)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEECCHHHCCCCEEECCCCCEECCCCCC
T ss_conf 65137787633578899999999999999998607986343887337899644764621120641115740133287887
Q ss_pred -CHHHHHHHHHH-HHHHCCCCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHCCCC-CEEEE-EECCCCHHHHHHHH
Q ss_conf -32456543334-433114478148986304322210233----344544323202466-06776-20255167765322
Q gi|254781097|r 166 -RSSLIKMKDIP-YQSSDLDQPFHLLVFGGSQGAKVFSDI----VPKSIALIPEMQRKR-LVIMQ-QVREDDKEKVQKQY 237 (369)
Q Consensus 166 -R~~~~~~~~~~-~~~~~~~~~~~ILv~GGS~Ga~~ln~~----v~~~~~~l~~~~~~~-~~v~~-~~g~~~~~~~~~~~ 237 (369)
|++ ... +.....++++.||| |+|+ .||+. .+.+++.+.+ .. +.|+. .++.-|.+. +
T Consensus 244 ~R~~-----~~~nFw~~~~~~~pV~li---SLGT-vFn~~p~~fyr~f~~AF~~---~~GW~vV~~~g~~vDp~~----L 307 (429)
T TIGR01426 244 DRKE-----DGSNFWAEPEKGRPVVLI---SLGT-VFNAQPSKFYRTFVEAFRD---LPGWHVVLSVGKGVDPAD----L 307 (429)
T ss_pred CCCC-----CCCCCCCCCCCCCCEEEE---ECCH-HHCCCHHHHHHHHHHHCCC---CCCCEEEEEECCCCCHHH----H
T ss_conf 6777-----865577888888846999---7561-4412447999999986089---987079997267026466----1
Q ss_pred HHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCC
Q ss_conf 10011113454444514443004489972542023334552960487533552489899989999988988998000199
Q gi|254781097|r 238 DELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLS 317 (369)
Q Consensus 238 ~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~ 317 (369)
.+.|.|+.|..|+++. ++|..||+.|||||.+|.+|+++.|+|+|.||. ++| |..||+.+.++|+|+.++.+++|
T Consensus 308 ~~~P~Nv~VR~~VPq~-evL~~A~lfvTHgGmnSt~EaL~~gVP~va~P~--~ad--Q~~~A~R~~ELGlg~~l~~e~vT 382 (429)
T TIGR01426 308 GELPKNVEVRRWVPQL-EVLEKADLFVTHGGMNSTMEALAAGVPLVAVPQ--GAD--QPMTARRIAELGLGRVLPKEEVT 382 (429)
T ss_pred CCCCCCEEEECCCCHH-HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECC--CCC--CHHHHHHHHHCCCEEECCCCCCC
T ss_conf 6798877885465627-789888888631660158999964996898517--888--01376575135621113765527
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 899999999986189999999999985278327999999999999
Q gi|254781097|r 318 PERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLA 362 (369)
Q Consensus 318 ~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la 362 (369)
+++|.+.+.++++|++++++.++-.+....-.++++-||+||++-
T Consensus 383 a~~LR~~v~~v~~D~~~~~~~~~~r~~~~eAGG~~rAAdeiE~~l 427 (429)
T TIGR01426 383 AEKLREAVLAVLSDDEYLERLKKIRAEIREAGGARRAADEIEGFL 427 (429)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999860588899999999999985045338999999974
No 11
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=99.97 E-value=3.9e-31 Score=237.22 Aligned_cols=135 Identities=36% Similarity=0.574 Sum_probs=120.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (369)
|+|++||||||++||+|+|++|+++||+|.+.++++.+.++.. .+..+..+...+.++ +.+..+..++.+..+++++.
T Consensus 1 Ilia~GGTGGHv~Palala~~L~~~g~~v~igt~~~~e~~v~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (136)
T pfam03033 1 VLLAGGGTRGHVFPAVALAWALRRRGHEVRLGTPPGLEEFVEE-AGLPFVPIGGDGLRR-KSLKNLKEPLEGGRALRQAK 78 (136)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH-CCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 9899441579999999999999985997712158028888753-598189962798546-75999999999999999999
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 554203444243126532102478886234110122153200156778899999874
Q gi|254781097|r 87 RLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIA 143 (369)
Q Consensus 87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~ 143 (369)
.++++.|||+|++||||+|+|+++||+++++|++|||||++||++||++++++++|.
T Consensus 79 ~~l~~~kp~~vig~GGy~s~p~~~aa~~~~ip~~ihEqN~vpG~anr~l~~~a~~V~ 135 (136)
T pfam03033 79 EILKEFKPDLVIGFGGYVAVPALIAAPLAGIPLIVHEQNGIPGLVNKLLPWRADKVL 135 (136)
T ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCEEE
T ss_conf 999856998897438854228999999839988998798624999998887389810
No 12
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-26 Score=205.04 Aligned_cols=341 Identities=21% Similarity=0.185 Sum_probs=210.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCC-CCCEEEEECCCC-CCCCHHHHHH----HHHH
Q ss_conf 876999878852562079999999996598399995723767624446-875168752565-6533123321----1100
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFP-ADSIYEIVSSQV-RFSNPFVFWN----SLVI 77 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~----~l~~ 77 (369)
+.||++++.|+-||++|+++|+++|+++||+|.|.+..+...+....- .+..|....... ...+.....+ .+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQQ 80 (406)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEECCCCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf 95799981776432266699999999769749997377899999983646102446665323320112334548999988
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE---------------------ECCCCCCHH-----H
Q ss_conf 01211013555420344424312653210247888623411012---------------------215320015-----6
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV---------------------HEQNVIMGK-----A 131 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi---------------------hEqN~v~G~-----~ 131 (369)
++....+..+++.+..||++++.+-+... +++...++|++. -+.+..+.. .
T Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (406)
T COG1819 81 FKKLIRELLELLRELEPDLVVDDARLSLG---LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPRL 157 (406)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCCCCHHH---HHHHHCCCCEEEECCHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77666889999987461321241000123---565443887888613232344032168653101445665655553323
Q ss_pred HH-------HHHHHHHHHHCCCCC-------------------CCCCC-C----CCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 77-------889999987413432-------------------22235-5----66732530444324565433344331
Q gi|254781097|r 132 NR-------LLSWGVQIIARGLVS-------------------SQKKV-L----LRKIIVTGNPIRSSLIKMKDIPYQSS 180 (369)
Q Consensus 132 nk-------~l~~~a~~v~~~~~~-------------------~~~~~-~----~~k~~~~G~PvR~~~~~~~~~~~~~~ 180 (369)
.+ +...........+.- ..... + .....++| |+..+- .......
T Consensus 158 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~----~~~~~~~ 232 (406)
T COG1819 158 VRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIG-PLLGEA----ANELPYW 232 (406)
T ss_pred HCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCC----CCCCCCC
T ss_conf 03000220355656665302456455407777426987642215644576667886636567-757775----3346653
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 14478148986304322210233344544323202466067762025516776532210011113454444514443004
Q gi|254781097|r 181 DLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEA 260 (369)
Q Consensus 181 ~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~a 260 (369)
...++..|+++=||.+.. -+.+..+++.+.+ ....+++.++..+. .+...+.|+.+.+|++. .+++..|
T Consensus 233 ~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~---l~~~vi~~~~~~~~-----~~~~~p~n~~v~~~~p~-~~~l~~a 301 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA--VELLAIVLEALAD---LDVRVIVSLGGARD-----TLVNVPDNVIVADYVPQ-LELLPRA 301 (406)
T ss_pred CCCCCCEEEEECCCCCCH--HHHHHHHHHHHHC---CCCEEEEECCCCCC-----CCCCCCCCEEEECCCCH-HHHHHCC
T ss_conf 137996399955787537--8899999999854---99649997367642-----34688877478615758-9887407
Q ss_pred CEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 48997254202333455296048753355248989998999998898899800019989999999998618999999999
Q gi|254781097|r 261 NLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAK 340 (369)
Q Consensus 261 DlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~ 340 (369)
|++|||+|++|++|++++|+|+|.+|.. .+|..||..+++.|+|..+.-+.++++.|.++|.+++.|+.+++..++
T Consensus 302 d~vI~hGG~gtt~eaL~~gvP~vv~P~~----~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 302 DAVIHHGGAGTTSEALYAGVPLVVIPDG----ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred CEEEECCCHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9899179857999999739998982787----307879999997498831275658889999999999673999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998527832799999999999985553
Q gi|254781097|r 341 QVSMKGKPQAVLMLSDLVEKLAHVKVD 367 (369)
Q Consensus 341 ~~~~~~~~~aa~~i~~~i~~la~~k~~ 367 (369)
..+.+...++.+.++++|++....+..
T Consensus 378 ~~~~~~~~~g~~~~a~~le~~~~~~~~ 404 (406)
T COG1819 378 LAEEFKEEDGPAKAADLLEEFAREKKK 404 (406)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 999976555379999999999832567
No 13
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.92 E-value=6.2e-22 Score=172.88 Aligned_cols=349 Identities=16% Similarity=0.180 Sum_probs=223.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 87699987885256207999999999659839999572376762444687516875256565331233211100012110
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
+.||+|+||-..|-+. |-.+.++|+++.+++.|.+-++-....... ...+.+ ..+.--+....++.++++.+.+.
T Consensus 1 ~mkifi~aGE~SGD~~-ga~li~~Lk~~~~~~~~~GiGG~~M~~~G~--~~l~d~--~~l~vmG~~evl~~~~~~~~~~~ 75 (382)
T PRK00025 1 PLRIAIVAGEVSGDLL-GAGLIRALKAQAPNLEFVGIGGPRMEAAGF--ESLFDM--EELAVMGLVEVLPRLPRLLKIRK 75 (382)
T ss_pred CCEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEECCHHHHHCCC--CCCCCH--HHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9489999068418899-999999998319896799988299997699--544775--78313019999977999999999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHH--C--CCCCEEECC-CCC---CHHHHHHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 1355542034442431265321024788862--3--411012215-320---015677889999987413432222355-
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSISPLLAGMI--L--RIPSMVHEQ-NVI---MGKANRLLSWGVQIIARGLVSSQKKVL- 154 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~--l--~iP~vihEq-N~v---~G~~nk~l~~~a~~v~~~~~~~~~~~~- 154 (369)
+..+.+++++||+||.. -|..|-.-+|-.+ . +||++.+=. -.. +||+ +-+.++.|.+++-|+...+.+.
T Consensus 76 ~~~~~i~~~~Pd~vi~I-D~pgFnlrlak~lkk~~~~ipvi~yv~PqvWAWr~~R~-k~~~~~~D~ll~ifPFE~~~f~~ 153 (382)
T PRK00025 76 ELKRLLLAEPPDVFILI-DAPDFNLRLAKKLKKALPGIPIIHYVSPSVWAWRPGRA-KKIAKATDHVLAILPFEAAFYDK 153 (382)
T ss_pred HHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCHH-HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999986499999997-78306599999999716999889994715654064189-99999998761087656899986
Q ss_pred -CCCCEEEECCCCHHHHHHH--HHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHH---HHHHHHHHHCCCCCEEEEEE-C
Q ss_conf -6673253044432456543--334433114-47814898630432221023334---45443232024660677620-2
Q gi|254781097|r 155 -LRKIIVTGNPIRSSLIKMK--DIPYQSSDL-DQPFHLLVFGGSQGAKVFSDIVP---KSIALIPEMQRKRLVIMQQV-R 226 (369)
Q Consensus 155 -~~k~~~~G~PvR~~~~~~~--~~~~~~~~~-~~~~~ILv~GGS~Ga~~ln~~v~---~~~~~l~~~~~~~~~v~~~~-g 226 (369)
.-++.|||+|+-+++.... .......+. ++...|.++-||-.+.. ...++ +++..+... .++++++.-+ .
T Consensus 154 ~g~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~EI-~~~lPi~l~a~~~l~~~-~p~~~fvip~~~ 231 (382)
T PRK00025 154 LGVPVTYVGHPLADEIPLEPDRAAARAELGLDPDARVLALLPGSRGSEI-KRLLPTFLEAAQLLQQR-YPDLRFVVPLAN 231 (382)
T ss_pred CCCCCEECCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHH-HHHHHHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf 5998135698156432235687999987399855661787058858999-99789999999999987-899399995588
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 55167765322100111134544445144430044899725420233345529604875335524898999899999889
Q gi|254781097|r 227 EDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGG 306 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G 306 (369)
....+.++......+.+..+..+.++-.++|+.||++|+.||..|+ |++.+|+|+|.+ |....= -+.-|+.+.+.-
T Consensus 232 ~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~~~P~Vv~-Yk~~~l--t~~i~k~lvkv~ 307 (382)
T PRK00025 232 PKRREQFEQLLAEYAPDLSVTLLDGQAREAMAAADAALAASGTVTL-EAALLGVPMVVG-YKVKPL--TFWIAKRLVKVP 307 (382)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCEEEECCCHHHH-HHHHHCCCEEEE-EECCHH--HHHHHHHHHCCC
T ss_conf 7789999999984799983898268417788738887653777999-999971985899-807899--999999965699
Q ss_pred CEEE------------EEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8899------------80001998999999999861899999999999----852783279999999999998555
Q gi|254781097|r 307 GAKV------------ITENFLSPERLAEELCSAMKKPSCLVQMAKQV----SMKGKPQAVLMLSDLVEKLAHVKV 366 (369)
Q Consensus 307 ~a~~------------i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~----~~~~~~~aa~~i~~~i~~la~~k~ 366 (369)
..-+ +-|++.|++.+++++.++++|+++++++.+.. +.+ .++|+++.|+.|+++.+.++
T Consensus 308 ~isL~Nii~~k~ivPEllQ~~~~~~~i~~~~~~ll~d~~~~~~~~~~~~~lr~~L-~~gas~raA~~Il~~l~~~~ 382 (382)
T PRK00025 308 YISLPNLLAGEELVPELLQEEATPEKLARALLELLADGARRQALLEGFTELHQYL-RCGAAERAAQAVLELLKQRK 382 (382)
T ss_pred EEEHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCC
T ss_conf 7652487549976613405669999999999999669999999999999999985-78999999999999997369
No 14
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.91 E-value=2.8e-23 Score=182.29 Aligned_cols=261 Identities=17% Similarity=0.205 Sum_probs=155.4
Q ss_pred EEEE-E-CC-CCH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCC--CCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 6999-8-78-852-5620799999999965983999957237676244--468751687525656533123321110001
Q gi|254781097|r 6 VILL-V-AG-GTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITD--FPADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 6 ~ili-~-~g-GTG-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
||+| + +| .+| ||++||++||++|+++|++|.|++.......... ......+.+.......
T Consensus 2 kI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 67 (280)
T TIGR03590 2 RILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSSWQ-------------- 67 (280)
T ss_pred EEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCC--------------
T ss_conf 799999678991320899999999999988994999992795889999997598179816756520--------------
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEE-ECCCCCCHHHHHHHHHHHHHHHCCCCC----CC-CC
Q ss_conf 211013555420344424312653210247-888623411012-215320015677889999987413432----22-23
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMV-HEQNVIMGKANRLLSWGVQIIARGLVS----SQ-KK 152 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vi-hEqN~v~G~~nk~l~~~a~~v~~~~~~----~~-~~ 152 (369)
.......+++++.+||+|| +.+|..-+.. -.-+..+.+++. .+.+.. ...+|.+.-.-+. .+ ..
T Consensus 68 ~~~~~~~~~~~~~~~d~vI-iD~y~~~~~~~~~lk~~~~~~i~iDD~~~~--------~~~~d~vin~~~~~~~~~y~~~ 138 (280)
T TIGR03590 68 DDALELINLLEKEKFDILI-VDHYALDADWEKLIKHFGRKLLVIDDLADR--------PHDCDLLLDQNPGADALDYQGL 138 (280)
T ss_pred CCHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHCCEEEEEECCCCC--------CCCCCEEECCCCCCCHHHHCCC
T ss_conf 1299999999737979999-925999979999999839839999367654--------6561425414544475663644
Q ss_pred CCCCCCEEEEC---CCCHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEECC
Q ss_conf 55667325304---443245654333443311447814898-630432221023334454432320-2466067762025
Q gi|254781097|r 153 VLLRKIIVTGN---PIRSSLIKMKDIPYQSSDLDQPFHLLV-FGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVRE 227 (369)
Q Consensus 153 ~~~~k~~~~G~---PvR~~~~~~~~~~~~~~~~~~~~~ILv-~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g~ 227 (369)
.+...-.+.|. |+|++|.+.+.....+ ....+||| +|||... .+.. +.++.+.+. ....+.|+++.+.
T Consensus 139 ~~~~~~~l~G~~Y~~lr~~F~~~~~~~~~~---~~~~~Ili~~GGsD~~-~lt~---~il~~l~~~~~~~~i~vvig~~~ 211 (280)
T TIGR03590 139 VPANCRLLLGPSYALLREEFYQLRTANKRR---KPLRRVLVSFGGADPD-NLTL---KLLSALAESQINISITLVTGSSN 211 (280)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCC---CCCCEEEEEECCCCHH-HHHH---HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 886766986575343578887630322103---6553289997787700-0899---99999985166856799986798
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 516776532210011113454444514443004489972542023334552960487533552489899989999
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYL 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l 302 (369)
.+.+.+...... ..++++..+.+||+++|+.||++|| |||+|++|++++|+|+|.||. + ++|..||+.|
T Consensus 212 ~~~~~i~~~~~~-~~~~~~~~~~~~m~~~m~~aDlaI~-agG~t~~El~~~gvP~i~i~~---a-dNQ~~~a~~l 280 (280)
T TIGR03590 212 PNLDELKKFAKE-YPNIILFIDVENMAELMNEADLAIG-AAGSTSWERCCLGLPSLSIVL---A-ENQQSNSQQL 280 (280)
T ss_pred CCHHHHHHHHHH-CCCEEEECCHHHHHHHHHHCCEEEE-CCCHHHHHHHHHCCCEEEEEE---C-CCHHHHHHHC
T ss_conf 766999999972-8996996598899999997799998-596589999994999899997---0-2569998509
No 15
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.1e-21 Score=169.13 Aligned_cols=301 Identities=19% Similarity=0.273 Sum_probs=192.6
Q ss_pred EEEEECCCC--H-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 699987885--2-5620799999999965983999957237676244468751687525656533123321110001211
Q gi|254781097|r 6 VILLVAGGT--G-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~~gGT--G-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
..+++.||. | |||+|++.||++|.++|..+.|.+....+..+.+ .+..... ..
T Consensus 3 V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~-----~~~~f~~-------------------~~ 58 (318)
T COG3980 3 VLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHK-----VYEGFKV-------------------LE 58 (318)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH-----HHHHCCC-------------------EE
T ss_conf 79992687555751345599999999851746888406625642156-----6651043-------------------00
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHH---HHHCCCCCEEEC-CCCCCHHHHHHHHHHHHHHHCCC-CCCC-CCCCCC
Q ss_conf 01355542034442431265321024788---862341101221-53200156778899999874134-3222-235566
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLA---GMILRIPSMVHE-QNVIMGKANRLLSWGVQIIARGL-VSSQ-KKVLLR 156 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~ia---A~~l~iP~vihE-qN~v~G~~nk~l~~~a~~v~~~~-~~~~-~~~~~~ 156 (369)
.+.-..|++.|+|++|.- .|- .++=.. ..-.+.|+++.+ .|.. .++ ..+.+.-.. .... ...-+.
T Consensus 59 ~~~~n~ik~~k~d~lI~D-syg-l~~dd~k~ik~e~~~k~l~fDd~~~~---~~~----d~d~ivN~~~~a~~~y~~v~~ 129 (318)
T COG3980 59 GRGNNLIKEEKFDLLIFD-SYG-LNADDFKLIKEEAGSKILIFDDENAK---SFK----DNDLIVNAILNANDYYGLVPN 129 (318)
T ss_pred EECCCCCCCCCCCEEEEE-CCC-CCHHHHHHHHHHHCCCEEEECCCCCC---CHH----HHHHHHHHHHCCHHHCCCCCC
T ss_conf 233641003667789994-268-88789999889738817996477764---225----667354555351122053676
Q ss_pred CC-EEEE---CCCCHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 73-2530---4443245654333443311447814898-63043222102333445443232024660677620255167
Q gi|254781097|r 157 KI-IVTG---NPIRSSLIKMKDIPYQSSDLDQPFHLLV-FGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKE 231 (369)
Q Consensus 157 k~-~~~G---~PvR~~~~~~~~~~~~~~~~~~~~~ILv-~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~ 231 (369)
|+ .+-| .|+|++|+..++....+ ....||| +||| .. .+...+.+..++... .++.|+.+.....+.
T Consensus 130 k~~~~lGp~y~~lr~eF~~~r~~~~~r----~~r~ilI~lGGs---Dp-k~lt~kvl~~L~~~~-~nl~iV~gs~~p~l~ 200 (318)
T COG3980 130 KTRYYLGPGYAPLRPEFYALREENTER----PKRDILITLGGS---DP-KNLTLKVLAELEQKN-VNLHIVVGSSNPTLK 200 (318)
T ss_pred CEEEEECCCCEECCHHHHHHHHHHHHC----CHHEEEEECCCC---CH-HHHHHHHHHHHHCCC-EEEEEEECCCCCCHH
T ss_conf 637996587114169999868998635----311289971688---72-445999999840357-049999468885466
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 76532210011113454444514443004489972542023334552960487533552489899989999988988998
Q gi|254781097|r 232 KVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVI 311 (369)
Q Consensus 232 ~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i 311 (369)
.+++++.. ..++.++.+++||+++|..||++|+ ||++|++|+++.|+|++.+|+- .||..-|++|+.+|...-.
T Consensus 201 ~l~k~~~~-~~~i~~~~~~~dma~LMke~d~aI~-AaGstlyEa~~lgvP~l~l~~a----~NQ~~~a~~f~~lg~~~~l 274 (318)
T COG3980 201 NLRKRAEK-YPNINLYIDTNDMAELMKEADLAIS-AAGSTLYEALLLGVPSLVLPLA----ENQIATAKEFEALGIIKQL 274 (318)
T ss_pred HHHHHHHH-CCCEEEEECCHHHHHHHHHCCHHEE-CCCHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHHCCCHHHC
T ss_conf 78888865-7880268622458999986033314-4635799999826982587633----0178887789866860022
Q ss_pred EHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 00019989999999998618999999999998527832799999
Q gi|254781097|r 312 TENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLS 355 (369)
Q Consensus 312 ~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~ 355 (369)
.-. +++.++...+.++.+|+.++..++...+...+.....||+
T Consensus 275 ~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i~dg~g~~rI~ 317 (318)
T COG3980 275 GYH-LKDLAKDYEILQIQKDYARRKNLSFGSKLIGDGRGFLRIA 317 (318)
T ss_pred CCC-CCHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCCCCEECC
T ss_conf 677-7618789999986407777642221110220350424515
No 16
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.87 E-value=9e-21 Score=164.75 Aligned_cols=338 Identities=20% Similarity=0.260 Sum_probs=197.0
Q ss_pred CCCCCEEEEECCCC-H-HHHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHH-----
Q ss_conf 99887699987885-2-5620799999999965--9839999572376762444687516875256565331233-----
Q gi|254781097|r 1 MSENNVILLVAGGT-G-GHVFPAVALSHELKNR--GYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVF----- 71 (369)
Q Consensus 1 M~~~~~ili~~gGT-G-GHi~palala~~L~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 71 (369)
|++.++|++-.-.| | ||+.+|+.||++|.+. |.+|.++++.....-..--.+..+..+++.....++....
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~ 85 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDG 85 (400)
T ss_pred HHCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEECCCCCEEEEECCC
T ss_conf 10062578986010130489999999999852556843999958975688977456756854845745887334445688
Q ss_pred -HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHH-------HHHHC--CCCCEE---------ECCCCCCHHHH
Q ss_conf -211100012110135554203444243126532102478-------88623--411012---------21532001567
Q gi|254781097|r 72 -WNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLL-------AGMIL--RIPSMV---------HEQNVIMGKAN 132 (369)
Q Consensus 72 -~~~l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~i-------aA~~l--~iP~vi---------hEqN~v~G~~n 132 (369)
........+.++ +.-.+.+|||++|-- .+|..+ .+.+. +-+.++ ||- ..+++.+
T Consensus 86 ~l~e~~~~Rs~li--l~t~~~fkPDi~IVd----~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p~~~-~~~w~~~ 158 (400)
T COG4671 86 DLEETKKLRSQLI--LSTAETFKPDIFIVD----KFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIPQEL-EADWRRA 158 (400)
T ss_pred CHHHHHHHHHHHH--HHHHHHCCCCEEEEE----CCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHCHHHH-CCCHHHH
T ss_conf 8999999999999--999983299789993----55541365466799998605986255447655254441-3514456
Q ss_pred ---HHHHHHHHHHHC-CCCCCC------C--CCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC-CCC
Q ss_conf ---788999998741-343222------2--3556673253044432456543334433114478148986-3043-222
Q gi|254781097|r 133 ---RLLSWGVQIIAR-GLVSSQ------K--KVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVF-GGSQ-GAK 198 (369)
Q Consensus 133 ---k~l~~~a~~v~~-~~~~~~------~--~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~-GGS~-Ga~ 198 (369)
+...+|.|.|.+ +-++.+ . ....+|..++|.- +.+. ...+.+... ..+.+.|||+ ||.+ |+.
T Consensus 159 ~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v-q~~~-~~~~~p~~~--~pE~~~Ilvs~GGG~dG~e 234 (400)
T COG4671 159 ETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV-QRSL-PHLPLPPHE--APEGFDILVSVGGGADGAE 234 (400)
T ss_pred HHHHHHHHHHEEEEEECCCCCCCHHHCCCCCHHHHHHEEEEEEE-ECCC-CCCCCCCCC--CCCCCEEEEECCCCHHHHH
T ss_conf 79999987540799946954157322278607656326676776-1367-678898767--8763339995488720599
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH-HHCC--CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHH
Q ss_conf 102333445443232024660677620255167765322-1001--1113454444514443004489972542023334
Q gi|254781097|r 199 VFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQY-DELG--CKATLACFFKDIERYIVEANLLICRSGALTVSEI 275 (369)
Q Consensus 199 ~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~--~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~ 275 (369)
-+ +++..+...+++... ...| .+|....+..++.+ ...+ .++.++.|.+||.++|..||++||-+|.+|++|+
T Consensus 235 Li-~~~l~A~~~l~~l~~-~~~i--vtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeI 310 (400)
T COG4671 235 LI-ETALAAAQLLAGLNH-KWLI--VTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEI 310 (400)
T ss_pred HH-HHHHHHHHHCCCCCC-CEEE--EECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEECCCCHHHHHH
T ss_conf 99-999987550778874-3389--8489998899999987425699728997330399998764403520462226688
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 55296048753355248989998999998898899800019989999999998618999999999998527832799999
Q gi|254781097|r 276 AVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLS 355 (369)
Q Consensus 276 ~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~ 355 (369)
+++|+|+++||+-... .+|.-.|+.+++.|..-++.++++++..|++++...+.-|+. .+..-.-++++.++
T Consensus 311 Ls~~k~aLivPr~~p~-eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~-------~~~~L~L~G~~~~a 382 (400)
T COG4671 311 LSFGKPALIVPRAAPR-EEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSP-------SKPHLDLEGLEHIA 382 (400)
T ss_pred HHCCCCEEEECCCCCC-HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHH
T ss_conf 7379955984367873-899999999986695103073558968999999854268998-------76663734567689
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781097|r 356 DLVEKL 361 (369)
Q Consensus 356 ~~i~~l 361 (369)
+.+-++
T Consensus 383 ~~l~e~ 388 (400)
T COG4671 383 RILAEL 388 (400)
T ss_pred HHHHHH
T ss_conf 999998
No 17
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=99.86 E-value=3.6e-19 Score=153.52 Aligned_cols=337 Identities=14% Similarity=0.118 Sum_probs=207.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (369)
|+|+||-..|-+. +-.|.++|+++.+++.|.+-++........ ...+.+.. +.--+.+..+..++++.+.+.+..
T Consensus 1 Ifi~aGE~SGD~~-ga~Li~~Lk~~~p~i~~~GvGG~~M~~~G~--~~l~d~~~--lsvmG~~evl~~l~~l~~~~~~~~ 75 (373)
T pfam02684 1 IFLSAGEASGDIL-GGELIQNLKEHYPNLRFIGVGGPKMEAEGF--ESLANMEE--ISVMGFIEVLGRLFKLLKIYQKVV 75 (373)
T ss_pred CEEEECCCCHHHH-HHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCHHH--HHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9899358518999-999999998309894899988089997799--53477278--414019999989999999999999
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHH--C--CCCCEEECC-CC---CCHHHHHHHHHHHHHHHCCCCCCCCCCC--CC
Q ss_conf 5542034442431265321024788862--3--411012215-32---0015677889999987413432222355--66
Q gi|254781097|r 87 RLIKKLKPNVVVGFGGYHSISPLLAGMI--L--RIPSMVHEQ-NV---IMGKANRLLSWGVQIIARGLVSSQKKVL--LR 156 (369)
Q Consensus 87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~~--l--~iP~vihEq-N~---v~G~~nk~l~~~a~~v~~~~~~~~~~~~--~~ 156 (369)
+.+++++||++|+. -|..|-.-+|.++ . ++|++.+=. -. .+||+ |-+.++.|.+++-||...+.+. .-
T Consensus 76 ~~i~~~~PD~vIlI-D~pgFNlrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~-k~i~~~~D~ll~IfPFE~~~y~~~gv 153 (373)
T pfam02684 76 KNILKKKPDTLILI-DAPDFNLRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRA-KIIAKYTDLLLAILPFEKGFFQKFGL 153 (373)
T ss_pred HHHHHCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEECHHHH-HHHHHHHHHHCCCCCCCHHHHHHHCC
T ss_conf 98742699889997-17615599999999719998789996884221271589-99999998731289887899986099
Q ss_pred CCEEEECCCCHHHHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCHHHH---HHHHHHHHHHHCCCCCEEEEEECCCCH-
Q ss_conf 7325304443245654333--4433114478148986304322210233---344544323202466067762025516-
Q gi|254781097|r 157 KIIVTGNPIRSSLIKMKDI--PYQSSDLDQPFHLLVFGGSQGAKVFSDI---VPKSIALIPEMQRKRLVIMQQVREDDK- 230 (369)
Q Consensus 157 k~~~~G~PvR~~~~~~~~~--~~~~~~~~~~~~ILv~GGS~Ga~~ln~~---v~~~~~~l~~~~~~~~~v~~~~g~~~~- 230 (369)
++.|+|+|+-+.+...... ..+....++...|.++-||--+. +... +.+++..+.+. .+.++++.-+-....
T Consensus 154 ~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~E-I~~~lPi~l~aa~~l~~~-~~~~~~~ip~~~~~~~ 231 (373)
T pfam02684 154 DCRYVGHPLLDEIKLYKKRASAKELLIDHDEPILALLPGSRKGE-IRRLLPPIQVAAQQLSSQ-FPNLKLLVPLVNKKYE 231 (373)
T ss_pred CEEECCCCHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCHHH-HHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHH
T ss_conf 71575981165401377658999746898775577678886999-999999999999999976-8991899965887899
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 77653221001111345444451444300448997254202333455296048753355248989998999998898899
Q gi|254781097|r 231 EKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKV 310 (369)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~ 310 (369)
+.........+.++.+.....+-.+.|++||++++.||..|+ |++.+|+|+|.+ |..+.= -+.-++.+.+....-+
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~sd~al~~SGTaTL-E~al~~~P~vV~-Yk~~~l--ty~i~k~lvkv~~isL 307 (373)
T pfam02684 232 EQIEDTLALENCDVSLLEISGERYEAMFAADAALAKSGTATL-EAALAGTPMVVA-YRVKPL--TFFLAKRLVKIDYISL 307 (373)
T ss_pred HHHHHHHHHCCCCCCEEECCCCHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEE-EECCHH--HHHHHHHHHCCCEEEH
T ss_conf 999999986499987898057249999848650121676999-999819998999-957789--9999999983895443
Q ss_pred ------------EEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCHHHHHHHH
Q ss_conf ------------80001998999999999861899999999999852------78327999999
Q gi|254781097|r 311 ------------ITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK------GKPQAVLMLSD 356 (369)
Q Consensus 311 ------------i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~------~~~~aa~~i~~ 356 (369)
+-|++.|++.|++++..+++|++++++|.+..+++ +..+++++.|.
T Consensus 308 ~Nii~~k~ivPEllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l~~g~~~~~~~aa~ 371 (373)
T pfam02684 308 PNIILNREIVPEFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLLRFGQCNSDEQAAL 371 (373)
T ss_pred HHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 4886699867356475178999999999996799999999999999999985689998897775
No 18
>PRK10307 predicted glycosyl transferase; Provisional
Probab=99.85 E-value=3e-18 Score=147.11 Aligned_cols=343 Identities=14% Similarity=0.105 Sum_probs=187.2
Q ss_pred EEEEEC-------CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-------HHH------HCCCCCCCEEEEECCCCCC
Q ss_conf 699987-------88525620799999999965983999957237-------676------2444687516875256565
Q gi|254781097|r 6 VILLVA-------GGTGGHVFPAVALSHELKNRGYAVYLITDRRA-------RSF------ITDFPADSIYEIVSSQVRF 65 (369)
Q Consensus 6 ~ili~~-------gGTGGHi~palala~~L~~~g~~v~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~ 65 (369)
||++.+ ||++=| ...++++|.++||+|.++|.... ..+ -+...+..++..+......
T Consensus 2 rIl~vs~~y~P~~~G~~~~---~~~La~~L~~~GheV~Vit~~p~~p~~~~~~~~~~~~~~~e~~~gv~v~R~p~~~~~~ 78 (415)
T PRK10307 2 KILVYGINYAPELTGIGKY---TGEMAEWLAARGHEVRVITAPPYYPQWQVGEGYSAWRYRREERGGVTVWRCPLYVPKQ 78 (415)
T ss_pred EEEEECCCCCCCCCCHHHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCC
T ss_conf 8999858489978879999---9999999997899899997799887665577766654311367888999830456788
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCC-CCCH-HHHHHHHHCCCCCEEECCCCCC--------------H
Q ss_conf 3312332111000121101355542034442431265-3210-2478886234110122153200--------------1
Q gi|254781097|r 66 SNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGG-YHSI-SPLLAGMILRIPSMVHEQNVIM--------------G 129 (369)
Q Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~ii~~~kPDvVi~tGG-y~s~-P~~iaA~~l~iP~vihEqN~v~--------------G 129 (369)
.+..........+..+..........++||+|+++-- +.+. .+.+++++.+.|+++|-++..+ +
T Consensus 79 ~~~~~r~~~~~~f~~~~~~~~~~~~~~~pD~v~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~g~l~~~~~~ 158 (415)
T PRK10307 79 PSGLKRLLHLGSFALSSFPPLMAQRRWRPDRVIGVAPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLGKGKGG 158 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHCCCCCCCCH
T ss_conf 40899999999999999999999847699989992877889999999999629888999900211456651401124456
Q ss_pred HHHHHH-------HHHHHHHHCCCCCCC-----CCCCCCCCEEEECCCCHHHHHHHH-----HHHHHHCCCCCCEEEEEE
Q ss_conf 567788-------999998741343222-----235566732530444324565433-----344331144781489863
Q gi|254781097|r 130 KANRLL-------SWGVQIIARGLVSSQ-----KKVLLRKIIVTGNPIRSSLIKMKD-----IPYQSSDLDQPFHLLVFG 192 (369)
Q Consensus 130 ~~nk~l-------~~~a~~v~~~~~~~~-----~~~~~~k~~~~G~PvR~~~~~~~~-----~~~~~~~~~~~~~ILv~G 192 (369)
...++. .+.+|.+.+..+... ...+.+|+.++.|.+..+.+.... ..+...+.+....++++.
T Consensus 159 ~~~~~~~~~e~~~~~~ad~v~~~S~~~~~~l~~~g~~~~ki~vipNgvd~~~f~p~~~~~~~~~r~~~g~~~~~~vvly~ 238 (415)
T PRK10307 159 KVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSDVARFQDVADADVDALRAQLGLPDGKKIVLYS 238 (415)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999999999858989977999999999828998709997681510003787852068999970999998799994
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC-CCCCCCCC--CCCHHHHHCCCEEE--EC
Q ss_conf 04322-210233344544323202466067762025516776532210011-11345444--45144430044899--72
Q gi|254781097|r 193 GSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGC-KATLACFF--KDIERYIVEANLLI--CR 266 (369)
Q Consensus 193 GS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~-~~~v~~f~--~~m~~~~~~aDlvI--sr 266 (369)
|.+|- +.+ +.+.+++..+.+. .++.++..+.....+++++...+.+. |+.+.+++ ++++++|++||+.+ ++
T Consensus 239 Grl~~~kg~-~~li~A~~~l~~~--~~~~lvivG~G~~~~~L~~~a~~~gl~~V~f~g~~~~e~l~~~~~~aDv~v~ps~ 315 (415)
T PRK10307 239 GNIGEKQGL-ELVIDAAARLRDR--PDLIFVICGQGGGKARLEKMARCRGLRNVHFLPLQPYDALPALLKMADCHLLPQK 315 (415)
T ss_pred CCCHHHCCH-HHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCEEEEECC
T ss_conf 776011187-9999999983128--9869999688740899999999709983898188788999999984749997044
Q ss_pred CCC------HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 542------0233345529604875335524898999899999-889889980001998999999999861899999999
Q gi|254781097|r 267 SGA------LTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQ-EGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMA 339 (369)
Q Consensus 267 aG~------~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~-~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~ 339 (369)
.++ +.+.|.+++|+|.|...-+...- +..++ ..++|++++..| ++.|+++|..+++||+.+++|+
T Consensus 316 ~e~~~~v~Pskl~~~mA~G~PVva~~~~g~~~------~~~v~~~~~~G~~v~p~d--~~~La~ai~~ll~d~~~~~~mg 387 (415)
T PRK10307 316 AGAADLVLPSKLTNMLASGRNVVATAEPGTEL------GQLCETFPGIGVCVPPED--VEALVAAIRQLLALPKRRTALG 387 (415)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC------CHHEEEECCEEEEECCCC--HHHHHHHHHHHHCCHHHHHHHH
T ss_conf 11123457579999986699689992588765------201276278089978999--9999999999977999999999
Q ss_pred HHHHHCCCCH-HHHHHHHHHHHHH
Q ss_conf 9998527832-7999999999999
Q gi|254781097|r 340 KQVSMKGKPQ-AVLMLSDLVEKLA 362 (369)
Q Consensus 340 ~~~~~~~~~~-aa~~i~~~i~~la 362 (369)
+++++....+ .-+++++..+++-
T Consensus 388 ~~gr~~~~~~f~~e~~~~~~~~~~ 411 (415)
T PRK10307 388 AAAREYAERTLDRENVLRQFIADI 411 (415)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999779999999999999
No 19
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.85 E-value=7e-19 Score=151.51 Aligned_cols=329 Identities=15% Similarity=0.134 Sum_probs=191.3
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||++.+. -+||--.-...++++|.++||+|.++|......... ......+........... ...+..
T Consensus 1 kIl~i~~~f~P~~GG~e~~~~~la~~L~~~Gh~V~v~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~ 71 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG---PARVVPVPSVPLPGYPEI------RLALPP 71 (364)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCEEEEEEEECCCCCCC------EECCCH
T ss_conf 98999388899988499999999999997799899997899765555---663467866746888763------002032
Q ss_pred CHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHHHCCCCCEE--ECC------CCCCHH----HH---HHHHHHHHHHHCC
Q ss_conf 10135554203444243126-53210247888623411012--215------320015----67---7889999987413
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFG-GYHSISPLLAGMILRIPSMV--HEQ------NVIMGK----AN---RLLSWGVQIIARG 145 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tG-Gy~s~P~~iaA~~l~iP~vi--hEq------N~v~G~----~n---k~l~~~a~~v~~~ 145 (369)
.....+++++++||+|.... ++.++.+..+++..++|++. |+. +...+. .. +++.+.++.+++.
T Consensus 72 ~~~~~~~~~~~~pDiIh~~~~~~~~~~a~~~~~~~~ip~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 151 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVP 151 (364)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999865999999878416789999999975997899974764888776032056899999999998507999989
Q ss_pred CCCC---CCCCCCCCCEEEECCCCHHHHHHHH--HH-HHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 4322---2235566732530444324565433--34-433114478148986304322-210233344544323202466
Q gi|254781097|r 146 LVSS---QKKVLLRKIIVTGNPIRSSLIKMKD--IP-YQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKR 218 (369)
Q Consensus 146 ~~~~---~~~~~~~k~~~~G~PvR~~~~~~~~--~~-~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~ 218 (369)
.... ......+++.++.|.|..+.+.... .. ......+++..| ++-|.++- +.+. .+.+++..+.+. ..
T Consensus 152 S~~~~~~~~~~~~~~~~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~i-~~vGrl~~~Kg~~-~ll~a~~~l~~~--~~ 227 (364)
T cd03814 152 SPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLGPPDRPVL-LYVGRLAPEKNLE-ALLDADLPLRRR--PP 227 (364)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHCCCCCCCEE-EEEECCCCCCCHH-HHHHHHHHHHCC--CC
T ss_conf 9999999985099888996896169884875432666530268998389-9964575557899-999999973005--88
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHCCCEEEECCC----CHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 067762025516776532210011113454444--51444300448997254----202333455296048753355248
Q gi|254781097|r 219 LVIMQQVREDDKEKVQKQYDELGCKATLACFFK--DIERYIVEANLLICRSG----ALTVSEIAVIGRPAILVPYPHSVD 292 (369)
Q Consensus 219 ~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~--~m~~~~~~aDlvIsraG----~~Ti~E~~~~g~P~IlIP~p~a~~ 292 (369)
+.++..+.....+++++ ...++.+.++++ ++.++|+.||+++.-|- +.++.|++++|+|.|.-+.+
T Consensus 228 ~~l~ivG~G~~~~~l~~----~~~~v~f~G~~~~~el~~~~~~adi~v~pS~~E~fg~~~lEAma~G~PvI~s~~g---- 299 (364)
T cd03814 228 VRLVIVGDGPARARLEA----RYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG---- 299 (364)
T ss_pred EEEEEECCCCCHHHHHH----CCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCC----
T ss_conf 59999847633999985----1898799078998999999982475678865345765799999839989995899----
Q ss_pred CHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 989998999998898899800019989999999998618999999999998527832799999999999
Q gi|254781097|r 293 QDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 293 ~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
...+.+++.+.|++++.. +++.|+++|..+++||+.+++|++++++......-+++++.++++
T Consensus 300 ----g~~Eiv~~~~~G~l~~~~--d~~~la~~i~~l~~~~~~~~~mg~~ar~~~~~~~w~~~~~~~~~~ 362 (364)
T cd03814 300 ----GPADIVTDGENGLLVEPG--DAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEA 362 (364)
T ss_pred ----CHHHHHCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf ----748883179828997999--999999999999769999999999999999968999999999997
No 20
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.85 E-value=2.4e-19 Score=154.75 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=181.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 69998788525620799999999965983999957237676244468751687525656533123321110001211013
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIAS 85 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (369)
|||..+.-+||=-.-...|+++|.++||+|.+++............+...+.++... ...+++. .+.++++.
T Consensus 1 kil~i~~~~GG~e~~~~~La~~L~~~Gh~V~vit~~~~~~~~~~~~gv~~~~~~~~~-~~~~~~~-------~~~~~~~l 72 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDR-RGINPFK-------DLKALLRL 72 (359)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCEEEEECCCC-CCCCHHH-------HHHHHHHH
T ss_conf 989997587659999999999999769999999707987433675798899927877-7788699-------99999999
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCC------CCHHHH-------HHHHHHHHHHHCCCCCCCC-
Q ss_conf 55542034442431265321024788862341101221532------001567-------7889999987413432222-
Q gi|254781097|r 86 LRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNV------IMGKAN-------RLLSWGVQIIARGLVSSQK- 151 (369)
Q Consensus 86 ~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~------v~G~~n-------k~l~~~a~~v~~~~~~~~~- 151 (369)
.+++++++||+|.+......+.+.+|++..+.|.++|.... ...... |+..+.++.+.+..+...+
T Consensus 73 ~~~i~~~~pDvIh~~~~~~~~~~~la~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ii~~S~~~~~~ 152 (359)
T cd03808 73 YRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDL 152 (359)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHH
T ss_conf 99999849989999065135789999986499869999567740124547789999999999996499999949899999
Q ss_pred ----C-CCCC-CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf ----3-5566-73253044432456543334433114478148986304322-210233344544323202466067762
Q gi|254781097|r 152 ----K-VLLR-KIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQ 224 (369)
Q Consensus 152 ----~-~~~~-k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~ 224 (369)
. .+.. .+.+.++++..+..... .....++++ ++++.|.+.. +.+. .+.+++..+.+.. .++.++..
T Consensus 153 ~~~~~~~~~~~~~~i~~~gvd~~~~~~~----~~~~~~~~~-~i~~vGrl~~~Kg~~-~li~a~~~l~~~~-~~~~l~iv 225 (359)
T cd03808 153 ALKLGIIKKKKTVLIPGSGVDLDRFSPS----PEPIPEDDP-VFLFVARLLKDKGID-ELLEAARILKAKG-PNVRLLLV 225 (359)
T ss_pred HHHHCCCCCCCEEEECCCCCCHHHCCCC----CCCCCCCCE-EEEEECCCCHHCCHH-HHHHHHHHHHHHC-CCCEEEEE
T ss_conf 9983799746089977997686653866----546898984-999980463220739-9999999998639-98089997
Q ss_pred ECCCCHHHHH-HHHH--HCCCCCCCCCCCCCCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 0255167765-3221--00111134544445144430044899725----420233345529604875335524898999
Q gi|254781097|r 225 VREDDKEKVQ-KQYD--ELGCKATLACFFKDIERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLH 297 (369)
Q Consensus 225 ~g~~~~~~~~-~~~~--~~~~~~~v~~f~~~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~ 297 (369)
++....+... .... ....++.+.+|.+|+.++|+.||+.+.-+ =+.++.|++++|+|.|.-..+ +
T Consensus 226 G~g~~~~~~~~~~~~~~~~~~~v~f~G~~~~~~~~~~~~di~v~pS~~Egf~~~~lEAma~G~PvI~s~~g----g---- 297 (359)
T cd03808 226 GDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP----G---- 297 (359)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCC----C----
T ss_conf 68872589999999971889869980757789999996021578752135784289998669989994899----7----
Q ss_pred HHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf 8999998898899800019989999999998618999999999998527-8327999999999
Q gi|254781097|r 298 NAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVE 359 (369)
Q Consensus 298 NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~ 359 (369)
+.+.+.+...|++++.. +++.|+++|..+++|++.+++|++++++.. .....+.+++.++
T Consensus 298 ~~e~i~~~~~G~l~~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~l 358 (359)
T cd03808 298 CREAVIDGVNGFLVPPG--DAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 28886079818998999--99999999999988999999999999999998779999999974
No 21
>pfam00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase.
Probab=99.84 E-value=3.3e-17 Score=139.78 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=120.0
Q ss_pred CCEEEEEECCCCCCCHHHHHH-HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC--CC
Q ss_conf 814898630432221023334-454432320246606776202551677653221001111345444451444300--44
Q gi|254781097|r 185 PFHLLVFGGSQGAKVFSDIVP-KSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVE--AN 261 (369)
Q Consensus 185 ~~~ILv~GGS~Ga~~ln~~v~-~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~--aD 261 (369)
.-.|++.-||.- ..+.+... ..++.+... + ..|++...... ....+.|+.+..|.++. ++++. ..
T Consensus 276 ~gvIy~S~GS~~-~~~p~~~~~~l~~af~~l--p-~~vlWk~~~~~-------~~~l~~Nv~i~~W~PQ~-dILaHp~vk 343 (501)
T pfam00201 276 HGVVVFSLGSMV-SNIPEEKANEIASALAQI--P-QKVLWRFDGTK-------PSTLGRNTRLVKWLPQN-DLLGHPKTR 343 (501)
T ss_pred CCEEEEECHHHH-HHCCHHHHHHHHHHHHHC--C-CEEEEEECCCC-------CCCCCCCEEECCCCCHH-HHHCCCCCE
T ss_conf 787999720655-418999999999999858--9-84999847998-------77787544421668826-676198711
Q ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 89972542023334552960487533552489899989999988988998000199899999999986189999999999
Q gi|254781097|r 262 LLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQ 341 (369)
Q Consensus 262 lvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~ 341 (369)
+.|||+|-+|+.|+++.|+|+|.+|+= ++|..||+.+++.|.|+.++.+++|.+.|.++|.++++||++.+.+++-
T Consensus 344 lFITHgG~~S~~Eai~~GVP~v~iP~f----~DQ~~Na~~~~~~G~g~~l~~~~lt~~~l~~ai~~vl~n~~Y~~na~~~ 419 (501)
T pfam00201 344 AFVTHAGSNGVYEAICHGVPMVGMPLF----GDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKTVINDPSYKENIMRL 419 (501)
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 899658730699999859898971563----4469999999977978996321199999999999997098899999999
Q ss_pred HHHCC-CC-HHHHHHHHHHHHHHHHH
Q ss_conf 98527-83-27999999999999855
Q gi|254781097|r 342 VSMKG-KP-QAVLMLSDLVEKLAHVK 365 (369)
Q Consensus 342 ~~~~~-~~-~aa~~i~~~i~~la~~k 365 (369)
++.+. .| .+.++.+.-+|-+++-+
T Consensus 420 s~~~~d~P~~p~~~av~w~E~v~r~~ 445 (501)
T pfam00201 420 SSIHHDQPVKPLDRAVFWIEFVMRHK 445 (501)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99986599998999999999998359
No 22
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.84 E-value=3.6e-18 Score=146.57 Aligned_cols=338 Identities=17% Similarity=0.216 Sum_probs=180.6
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH--------CCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 6999878----85256207999999999659839999572376762--------44468751687525656533123321
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFI--------TDFPADSIYEIVSSQVRFSNPFVFWN 73 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (369)
||++.+. -.||--.....++++|.++||+|.+++........ ....+..++.+...............
T Consensus 1 KIlii~~~fpP~~gG~~~~~~~la~~L~~~Gh~V~v~t~~~~~~~~~~~~~~~~~~~~gi~v~r~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHH
T ss_conf 98999177789898299999999999997799799995478776432356664466488599993377667752788999
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCCCEEECCCCCC------H------HHHHHH----
Q ss_conf 110001211013555420344424312653--2102478886234110122153200------1------567788----
Q gi|254781097|r 74 SLVILWKAFIASLRLIKKLKPNVVVGFGGY--HSISPLLAGMILRIPSMVHEQNVIM------G------KANRLL---- 135 (369)
Q Consensus 74 ~l~~~~~~~~~~~~ii~~~kPDvVi~tGGy--~s~P~~iaA~~l~iP~vihEqN~v~------G------~~nk~l---- 135 (369)
....+..... .....+..+||+|++.+.+ ..+++..+++..++|++++-.+..| | ...+++
T Consensus 81 ~~~~~~~~~~-~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~p~v~~~hd~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T cd03794 81 NYLSFALSAL-LALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLE 159 (394)
T ss_pred HHHHHHHHHH-HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999999999-999985589988999178478899999999863996999968744678998367444448999999999
Q ss_pred ---HHHHHHHHCCCCCCC-----CCCCCCCCEEEECCCCHHHHHHHH--HHHHHH-CCCCCCEEEEEECCCCC-CCHHHH
Q ss_conf ---999998741343222-----235566732530444324565433--344331-14478148986304322-210233
Q gi|254781097|r 136 ---SWGVQIIARGLVSSQ-----KKVLLRKIIVTGNPIRSSLIKMKD--IPYQSS-DLDQPFHLLVFGGSQGA-KVFSDI 203 (369)
Q Consensus 136 ---~~~a~~v~~~~~~~~-----~~~~~~k~~~~G~PvR~~~~~~~~--~~~~~~-~~~~~~~ILv~GGS~Ga-~~ln~~ 203 (369)
.+.++.+.+..+... ...+..++.++.|.+..+.+.... ...... ..++++ ++++-|.++- +.+ +.
T Consensus 160 ~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~vipngvd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~Grl~~~kg~-~~ 237 (394)
T cd03794 160 RLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKF-VVLYAGNIGRAQGL-DT 237 (394)
T ss_pred HHHHHHCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCHHHCCCCCCHHHHHHHCCCCCCE-EEEEEEECCCCCCC-HH
T ss_conf 99998489999772999999998489923099994762576527775047778742689985-99996111000363-79
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC-CCCCCCCCC--CCCHHHHHCCCEEEEC-----CCCHH----
Q ss_conf 34454432320246606776202551677653221001-111345444--4514443004489972-----54202----
Q gi|254781097|r 204 VPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG-CKATLACFF--KDIERYIVEANLLICR-----SGALT---- 271 (369)
Q Consensus 204 v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~~~~v~~f~--~~m~~~~~~aDlvIsr-----aG~~T---- 271 (369)
+.+++..+.+. .++.++..++....+.+++.....+ .++.+.+++ +++.++|+.||+.|.- +++.+
T Consensus 238 li~a~~~l~~~--~~~~l~ivG~G~~~~~l~~~~~~~~~~~V~~~G~v~~~~~~~~~~~adi~v~p~~~~~~~~~~~P~k 315 (394)
T cd03794 238 LLEAAALLKDR--PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSK 315 (394)
T ss_pred HHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHH
T ss_conf 99999974558--9859999568516789999999819994998163046136778742969999277754457735689
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HH
Q ss_conf 33345529604875335524898999899999889889980001998999999999861899999999999852783-27
Q gi|254781097|r 272 VSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP-QA 350 (369)
Q Consensus 272 i~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~-~a 350 (369)
+.|++++|+|.|.... + ...+.+.+.+.|++++.. +++.|+++|..+++|++.+++|++++++.... ..
T Consensus 316 llEAma~G~PVV~s~~----g----g~~e~i~~~~~G~l~~~~--d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~fs 385 (394)
T cd03794 316 LFEYMAAGKPVLASVD----G----ESAELVEEAGAGLVVPPG--DPEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385 (394)
T ss_pred HHHHHHCCCCEEEECC----C----CHHHHEECCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999984997999589----9----807761218808997799--99999999999977999999999999999998589
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781097|r 351 VLMLSDLV 358 (369)
Q Consensus 351 a~~i~~~i 358 (369)
-+++++.+
T Consensus 386 w~~~a~~~ 393 (394)
T cd03794 386 REKLAERL 393 (394)
T ss_pred HHHHHHHH
T ss_conf 99999831
No 23
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.82 E-value=9.2e-18 Score=143.68 Aligned_cols=336 Identities=16% Similarity=0.157 Sum_probs=190.2
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||+|.+. ..||--..+..++++|.++||+|.+++............... .......... . ... ...+..
T Consensus 1 kIlii~~~~~P~~GG~e~~~~~la~~L~~~G~~V~vit~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~----~~~~~~ 73 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGI-VVVRPPPLLR-V-RRL----LLLLLL 73 (374)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCC-EEEECCCCCC-C-CHH----HHHHHH
T ss_conf 98999487799988199999999999997799899996079887503423771-6995676654-2-002----456789
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCH-------HHH-------HHHHHHHHHHHCCCC
Q ss_conf 101355542034442431265321024788862341101221532001-------567-------788999998741343
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMG-------KAN-------RLLSWGVQIIARGLV 147 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G-------~~n-------k~l~~~a~~v~~~~~ 147 (369)
.....+++++.+||+|.+...+...+...+++..++|++.+..+.... ... ++..+.++.+.+...
T Consensus 74 ~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 153 (374)
T cd03801 74 ALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSE 153 (374)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCH
T ss_conf 99999999855998999788317899999998669978999678621002210025689999999999983899999899
Q ss_pred CCCC------CCCCCCCEEEECCCCHHHHHHHHHH-HHHHC-CCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2222------3556673253044432456543334-43311-4478148986304322-210233344544323202466
Q gi|254781097|r 148 SSQK------KVLLRKIIVTGNPIRSSLIKMKDIP-YQSSD-LDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKR 218 (369)
Q Consensus 148 ~~~~------~~~~~k~~~~G~PvR~~~~~~~~~~-~~~~~-~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~ 218 (369)
...+ ..+..|+.++.+++..+.+...... ..... .++++.|+.. |.... +.+. .+.+++..+.+.. .+
T Consensus 154 ~~~~~l~~~~~~~~~ki~vI~ngid~~~~~~~~~~~~~~~~~~~~~~~il~v-Grl~~~Kg~~-~li~a~~~l~~~~-~~ 230 (374)
T cd03801 154 ATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGIPEDEPVILFV-GRLVPRKGVD-LLLEALAKLRKEY-PD 230 (374)
T ss_pred HHHHHHHHHCCCCHHHEEEECCCCCHHHCCCCCHHHHHHHCCCCCCEEEEEE-EECCCCCCCH-HHHHHHHHHHHHC-CC
T ss_conf 9999999861998568999889767554175417789871899998299999-5332002835-7899999998528-87
Q ss_pred CEEEEEECCCCHHHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEEC----CCCHHHHHHHHHCCCEEEEECCCC
Q ss_conf 0677620255167765322100--1111345444--4514443004489972----542023334552960487533552
Q gi|254781097|r 219 LVIMQQVREDDKEKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICR----SGALTVSEIAVIGRPAILVPYPHS 290 (369)
Q Consensus 219 ~~v~~~~g~~~~~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsr----aG~~Ti~E~~~~g~P~IlIP~p~a 290 (369)
+.++..++....+.+.+...+. ..++.+.+++ +++.++|+.||+.|.- +-+.++.|++++|+|.|.-..+
T Consensus 231 ~~l~ivG~g~~~~~~~~~~~~~~l~~~v~f~g~v~~~~~~~~~~~adi~v~pS~~E~~~~~~lEAma~G~PvI~t~~g-- 308 (374)
T cd03801 231 VRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG-- 308 (374)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC--
T ss_conf 299995688136699999997399855997586421137788765403658735543215899999769989997899--
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 48989998999998898899800019989999999998618999999999998527-832799999999999
Q gi|254781097|r 291 VDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKL 361 (369)
Q Consensus 291 ~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~l 361 (369)
+ ..+.+++...|++++.. +++.|++++..+++|++.+++|++++++.. ....-+.+++..+++
T Consensus 309 --g----~~e~i~~~~~G~l~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 372 (374)
T cd03801 309 --G----IPEVVEDGETGLLVPPG--DPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred --C----HHHHHCCCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf --7----58885189718997899--9999999999997799999999999999999868999999999976
No 24
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.82 E-value=1.4e-17 Score=142.51 Aligned_cols=318 Identities=20% Similarity=0.198 Sum_probs=178.1
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 6999878--85256207999999999659839999572376762444687516875256565331233211100012110
Q gi|254781097|r 6 VILLVAG--GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 6 ~ili~~g--GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
||++... +.||--.-+..++++|.++||+|.+++............ ............. .... .+....
T Consensus 1 KIl~v~~~~~~GG~e~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-------~~~~~~ 71 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP-SNVKLIPVRVLKL-KSLR-------DLLAIL 71 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCC-CCCEEEEECCCCC-CCHH-------HHHHHH
T ss_conf 989996999991599999999999997799799999779985133305-6733886135565-5332-------599999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCH---------HHHHHHHHHHHHHHCCCCCC----C
Q ss_conf 1355542034442431265321024788862341101221532001---------56778899999874134322----2
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMG---------KANRLLSWGVQIIARGLVSS----Q 150 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G---------~~nk~l~~~a~~v~~~~~~~----~ 150 (369)
+..+++++.+||+|++.+.+.+.-....+...++|++.+-.+.... ...++..+.++.+.+..+.. .
T Consensus 72 ~l~~~i~~~~~DiI~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~ 151 (353)
T cd03811 72 RLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLL 151 (353)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHH
T ss_conf 99999997499899998862789999999747997899979870443233466999999999868999995999999999
Q ss_pred C--CCCCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2--3556673253044432456543334433114-47814898630432-221023334454432320246606776202
Q gi|254781097|r 151 K--KVLLRKIIVTGNPIRSSLIKMKDIPYQSSDL-DQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLVIMQQVR 226 (369)
Q Consensus 151 ~--~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~-~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~v~~~~g 226 (369)
+ ..+..++.++.|+|..+.+............ ++...++.+ |.+. -+.+ +.+.+++..+.+. ..++.++..+.
T Consensus 152 ~~~~~~~~~i~vI~Ngvd~~~~~~~~~~~~~~~~~~~~~~il~v-Grl~~~Kg~-~~li~a~~~l~~~-~~~~~l~ivG~ 228 (353)
T cd03811 152 KLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIPPDGPVILAV-GRLSPQKGF-DTLIRAFALLRKE-GPDARLVILGD 228 (353)
T ss_pred HHCCCCHHHEEEECCCCCHHHHCHHHHHHHHHCCCCCCEEEEEE-EECCCCCCH-HHHHHHHHHHHHH-CCCEEEEECCC
T ss_conf 86199856899976756867623245654530688998699998-207664229-9999999976641-87379997478
Q ss_pred CCCHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 55167765322100--111134544445144430044899725----420233345529604875335524898999899
Q gi|254781097|r 227 EDDKEKVQKQYDEL--GCKATLACFFKDIERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300 (369)
Q Consensus 227 ~~~~~~~~~~~~~~--~~~~~v~~f~~~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~ 300 (369)
..+.+.+++...+. ..++.+.+|++|+.++|+.||++|.-| =+.++.|++++|+|.|.-. .++ +.+
T Consensus 229 G~~~~~l~~~~~~~~l~~~V~~~G~~~d~~~~~~~~di~v~pS~~Egfg~~~lEAma~G~pvI~s~----~gg----~~e 300 (353)
T cd03811 229 GPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATD----CPG----PRE 300 (353)
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEECC----CCC----HHH
T ss_conf 603999997788659860687548664302324208688715434688538999998099899948----998----489
Q ss_pred HHHHCCCEEEEEHHCCCHHHHHHHHHH---HHCCHHHHHHHHHHHHHC
Q ss_conf 999889889980001998999999999---861899999999999852
Q gi|254781097|r 301 YLQEGGGAKVITENFLSPERLAEELCS---AMKKPSCLVQMAKQVSMK 345 (369)
Q Consensus 301 ~l~~~G~a~~i~~~~~~~~~l~~~i~~---ll~d~~~l~~m~~~~~~~ 345 (369)
.+++...|++++..| ++.|++.+.. +++||+.+++|++++++.
T Consensus 301 ~i~~g~~G~l~~~~d--~~~la~~i~~l~~l~~~~~~~~~~g~~~~~~ 346 (353)
T cd03811 301 ILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARER 346 (353)
T ss_pred HHCCCCCEEEECCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 844898389978999--9999999999985149999999999999999
No 25
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.82 E-value=3.3e-17 Score=139.82 Aligned_cols=326 Identities=21% Similarity=0.241 Sum_probs=182.3
Q ss_pred EEEEE-CC-C-CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 69998-78-8-525620799999999965983999957237676244468751687525656533123321110001211
Q gi|254781097|r 6 VILLV-AG-G-TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~-~g-G-TGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
||++. .+ + .||--.-...++++|.++||+|.+++.........+. ...+................ +..+
T Consensus 1 KIl~v~~~l~~~GG~e~~~~~la~~L~~~G~~V~vit~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~-------~~~~ 72 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYEL-DPKIKVIDLGDKRDSKLLAR-------FKKL 72 (348)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC-CCCEEEEECCCCCCCCHHHH-------HHHH
T ss_conf 989997979999878999999999998779989999966999864405-89749998887654205678-------9999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HCCCCCEEECCCCCC----HH----HHHHHHHHHHHHHCCCCC---CC
Q ss_conf 0135554203444243126532102478886-234110122153200----15----677889999987413432---22
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGM-ILRIPSMVHEQNVIM----GK----ANRLLSWGVQIIARGLVS---SQ 150 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~-~l~iP~vihEqN~v~----G~----~nk~l~~~a~~v~~~~~~---~~ 150 (369)
...++++++.+||+|+++..+ .+..++.. ..++|++.+.-+... .. ..++..+.++.+.+.... ..
T Consensus 73 ~~l~~~~~~~~~Dvi~~~~~~--~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~ 150 (348)
T cd03820 73 RRLRKLLKNNKPDVVISFLTS--LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred HHHHHHHHHCCCCEEEECCCC--HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
T ss_conf 999999997599999998963--699999997599828999757856630136799999999986899999699999987
Q ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 23556673253044432456543334433114478148986304322-21023334454432320246606776202551
Q gi|254781097|r 151 KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDD 229 (369)
Q Consensus 151 ~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~ 229 (369)
...+..++.++.||+....... ....+...|+.+ |.+.. +.+. .+.+++..+.+.. +++.++..+...+
T Consensus 151 ~~~~~~k~~vI~N~v~~~~~~~-------~~~~~~~~il~v-GRl~~~Kg~~-~li~a~~~l~~~~-~~~~l~ivG~G~~ 220 (348)
T cd03820 151 YKKFNKNVVVIPNPLPFPPEEP-------SSDLKSKRILAV-GRLVPQKGFD-LLIEAWAKIAKKH-PDWKLRIVGDGPE 220 (348)
T ss_pred HHCCCCCEEEECCCCCHHHCCC-------CCCCCCCEEEEE-ECCCCCCCHH-HHHHHHHHHHHHC-CCEEEEEEECCCC
T ss_conf 5237889899889988232265-------446679889999-3786324949-9988889888648-9859999946875
Q ss_pred HHHHHHHHHHC--CCCCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 67765322100--111134544445144430044899725---4-20233345529604875335524898999899999
Q gi|254781097|r 230 KEKVQKQYDEL--GCKATLACFFKDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQ 303 (369)
Q Consensus 230 ~~~~~~~~~~~--~~~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~ 303 (369)
.+.+++...+. ..++.+.++++|+.++|+.||+.|.-+ | +.++.|++++|+|.|.-+.+.+ ..+.+.
T Consensus 221 ~~~l~~~i~~~~l~~~v~~~G~~~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PvIas~~~gg-------~~e~v~ 293 (348)
T cd03820 221 REALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG-------PSEIIE 293 (348)
T ss_pred CCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCC-------HHHHHC
T ss_conf 3201567776335773642475222233221357531464124587089999986999999679988-------499953
Q ss_pred HCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 889889980001998999999999861899999999999852783279999999999
Q gi|254781097|r 304 EGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 304 ~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
+...|++++.. +++.|+++|..+++||+.+++|++++++......-+++++.-|+
T Consensus 294 ~~~~G~l~~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~i~~~ye~ 348 (348)
T cd03820 294 DGVNGLLVPNG--DVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWEE 348 (348)
T ss_pred CCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 89629998899--99999999999977999999999999999996999999999659
No 26
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.80 E-value=1.2e-16 Score=135.94 Aligned_cols=324 Identities=17% Similarity=0.163 Sum_probs=180.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 85256207999999999659839999572376762444687516875256565331233211100012110135554203
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKL 92 (369)
Q Consensus 13 GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~ 92 (369)
+.||--.-+..++++|.++||+|.+++..+...............+ . ..+++. .++.++++..++++++
T Consensus 10 ~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-------~~~~~~~~~~~~i~~~ 78 (360)
T cd04951 10 GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILNL---N-MSKNPL-------SFLLALWKLRKILRQF 78 (360)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC---C-CCCCHH-------HHHHHHHHHHHHHHHH
T ss_conf 9813799999999999976998999981798544433457337863---7-666767-------8999999999999982
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-CCCEEECCCC-CCHHHHHHHHHHHHHHH----CCCCCC------CCCCCCCCCEE
Q ss_conf 444243126532102478886234-1101221532-00156778899999874----134322------22355667325
Q gi|254781097|r 93 KPNVVVGFGGYHSISPLLAGMILR-IPSMVHEQNV-IMGKANRLLSWGVQIIA----RGLVSS------QKKVLLRKIIV 160 (369)
Q Consensus 93 kPDvVi~tGGy~s~P~~iaA~~l~-iP~vihEqN~-v~G~~nk~l~~~a~~v~----~~~~~~------~~~~~~~k~~~ 160 (369)
+||+|.+..-+...-..++..... .|++...-+. ..|+..++..+..+... .-.... ...++..|+.+
T Consensus 79 ~pDvIh~h~~~~~~~~~~~~~~~~~~~~i~t~h~~~~~~~~~~~~~~~~~~~~~~~~~vs~~~~~~~~~~~~~~~~ki~v 158 (360)
T cd04951 79 KPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFV 158 (360)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf 99999986630789999999857998199985888754179999999998887865233399999999855888444899
Q ss_pred EECCCCHHHHHHHHH----HHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 304443245654333----443311447814898630432-221023334454432320246606776202551677653
Q gi|254781097|r 161 TGNPIRSSLIKMKDI----PYQSSDLDQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQK 235 (369)
Q Consensus 161 ~G~PvR~~~~~~~~~----~~~~~~~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~ 235 (369)
+-|+|..+.+..... .....+.+....++++-|.+- .+.+. .+.+++..+.+. ..++.++..+.....+.+++
T Consensus 159 I~ngvd~~~f~~~~~~~~~~r~~~~~~~~~~~il~vgRl~~~Kg~~-~li~a~~~l~~~-~~~~~l~ivG~G~~~~~l~~ 236 (360)
T cd04951 159 VYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYP-NLLKAFAKLLSD-YLDIKLLIAGDGPLRATLER 236 (360)
T ss_pred ECCCCCHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHH-HHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHH
T ss_conf 6687344421876156788998619998987999984066331157-899999999864-89979999678256788876
Q ss_pred HHHHCC--CCCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 221001--11134544445144430044899725---4-20233345529604875335524898999899999889889
Q gi|254781097|r 236 QYDELG--CKATLACFFKDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAK 309 (369)
Q Consensus 236 ~~~~~~--~~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~ 309 (369)
...+.+ .++.+.++++|+.++|+.||++|.-+ | +.++.|++++|+|.|.-..+ + ..+.+.+ .|+
T Consensus 237 ~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~Egfg~~~lEAma~G~PvI~s~~g----g----~~eii~~--~G~ 306 (360)
T cd04951 237 LIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAG----G----VREVVGD--SGL 306 (360)
T ss_pred HHHHHCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCC----C----HHHEECC--CEE
T ss_conf 67761777615424751026898762142558865578870899999859999987899----7----2655748--649
Q ss_pred EEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 9800019989999999998618999999999998527-832799999999999
Q gi|254781097|r 310 VITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKL 361 (369)
Q Consensus 310 ~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~l 361 (369)
+++.. +++.|++++..++.|++.+.+|.+++++.. ...+.+++++..+++
T Consensus 307 lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~~~~~v~~~fs~~~~~~~~~~l 357 (360)
T cd04951 307 IVPIS--DPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTL 357 (360)
T ss_pred EECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 98399--9999999999998791999999999999999869999999999997
No 27
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.79 E-value=3.6e-16 Score=132.54 Aligned_cols=332 Identities=15% Similarity=0.155 Sum_probs=180.1
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||+|.+. -.||=-.-...++++|.++||+|.+++........... ............... .. ...+..
T Consensus 1 kIaivt~~y~P~~GG~~~~~~~La~~L~~~GheV~Vit~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~---~~~~~~ 72 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEE--VVVVRPFRVPTFKYP---DF---RLPLPI 72 (374)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCEEEEECCCCCCCC---CH---HHHHHH
T ss_conf 9899958989999809999999999999779989999727988775435--762898436777652---13---455557
Q ss_pred CHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHCCCCCEE--ECC---------CCCCHHH-------HHHHHHHHHHH
Q ss_conf 10135554203444243126532-10247888623411012--215---------3200156-------77889999987
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYH-SISPLLAGMILRIPSMV--HEQ---------NVIMGKA-------NRLLSWGVQII 142 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~-s~P~~iaA~~l~iP~vi--hEq---------N~v~G~~-------nk~l~~~a~~v 142 (369)
.....+.+++.+||+|....-|. ...+...++.+++|++. |.. ....... .+++...++.+
T Consensus 73 ~~~~~~~~~~~~~DvIh~~~~~~~~~~a~~~~~~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 152 (374)
T cd03817 73 PRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAV 152 (374)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999866999999878258899999999974995999955777998876311101356789999999999859999
Q ss_pred HCCCCCCC----CCCCCCCCEEEECCCCHHHHHHHHHH--HHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHC
Q ss_conf 41343222----23556673253044432456543334--433114478148986304322-210233344544323202
Q gi|254781097|r 143 ARGLVSSQ----KKVLLRKIIVTGNPIRSSLIKMKDIP--YQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQ 215 (369)
Q Consensus 143 ~~~~~~~~----~~~~~~k~~~~G~PvR~~~~~~~~~~--~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~ 215 (369)
.+...... +.....++.++.|+|..+.+...... ...........++++.|.++. +.+ +.+.+++..+.+.
T Consensus 153 i~~S~~~~~~l~~~~~~~~i~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~-~~li~a~~~l~~~- 230 (374)
T cd03817 153 IAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNI-DFLIRAFARLLKE- 230 (374)
T ss_pred EECHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHC-
T ss_conf 97809999999970899988998696066643986417899981899998499997057542107-8999999988741-
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEEC----CCCHHHHHHHHHCCCEEEEEC
Q ss_conf 4660677620255167765322100--1111345444--4514443004489972----542023334552960487533
Q gi|254781097|r 216 RKRLVIMQQVREDDKEKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICR----SGALTVSEIAVIGRPAILVPY 287 (369)
Q Consensus 216 ~~~~~v~~~~g~~~~~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsr----aG~~Ti~E~~~~g~P~IlIP~ 287 (369)
..++.++..+.....+.+++...+. ..++.+.+++ +++.++|+.||++|.- +-+.++.|++++|+|.|.-..
T Consensus 231 ~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~f~G~v~~~~~~~~l~~adi~v~pS~~E~fg~~~~EAma~G~PvI~s~~ 310 (374)
T cd03817 231 EPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA 310 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 89848999877447655678888742466244358875667787644247544777665775999999981998999179
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 55248989998999998898899800019989999999998618999999999998527832799999999
Q gi|254781097|r 288 PHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLV 358 (369)
Q Consensus 288 p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i 358 (369)
+ ..++.+++...|++++.++ +.|+++|..+++||+.+++|++++++.....+-++.++.+
T Consensus 311 g--------g~~e~i~~g~~G~l~~~~~---~~l~~~i~~l~~~~~~~~~~~~~a~~~a~~f~~~~~~~~~ 370 (374)
T cd03817 311 P--------GLPDLVADGENGFLFPPGD---EALAEALLRLLQDPELRRRLSKNAEESAEKFSFAKKVEKL 370 (374)
T ss_pred C--------CHHHHHHCCCEEEEECCCH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9--------7599964798599969786---9999999999759999999999999999978999999999
No 28
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.78 E-value=1.1e-16 Score=136.11 Aligned_cols=328 Identities=16% Similarity=0.145 Sum_probs=179.5
Q ss_pred EEEE-CC-CCHHHHHHHHHHHHHHHHCCCEEEEEECHH-H--HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9998-78-852562079999999996598399995723-7--67624446875168752565653312332111000121
Q gi|254781097|r 7 ILLV-AG-GTGGHVFPAVALSHELKNRGYAVYLITDRR-A--RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 7 ili~-~g-GTGGHi~palala~~L~~~g~~v~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
|++. .+ +.||--.-...++++|.++||+|.+++... + ...+. ..+...+.+... .. ... +..
T Consensus 2 Il~v~~~l~~GG~e~~~~~la~~L~~~g~~v~vi~~~~~~~~~~~~~-~~~i~v~~l~~~---~~--~~~-------~~~ 68 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELE-EAGVPVYCLGKR---PG--RPD-------PGA 68 (365)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH-HCCCEEEECCCC---CC--CCC-------HHH
T ss_conf 89996989994189999999999997799499999579985578987-489569992787---66--568-------899
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC-CCCEE--ECCCCCC-HHH-------HHHHHHHHHHHHCCCCCCC
Q ss_conf 10135554203444243126532102478886234-11012--2153200-156-------7788999998741343222
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILR-IPSMV--HEQNVIM-GKA-------NRLLSWGVQIIARGLVSSQ 150 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~-iP~vi--hEqN~v~-G~~-------nk~l~~~a~~v~~~~~~~~ 150 (369)
+++..+++++++||+|.+..-...+-..+++...+ +|++. |..+... +.. .+++.++++.+.+......
T Consensus 69 ~~~l~~~i~~~~~DiIh~~~~~~~~~~~l~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~ 148 (365)
T cd03807 69 LLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAA 148 (365)
T ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 99999999983999999877426799999999759982899956885321010579999999999842999999499999
Q ss_pred -----CCCCCCCCEEEECCCCHHHHHH----HHHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf -----2355667325304443245654----333443311447814898630432-221023334454432320246606
Q gi|254781097|r 151 -----KKVLLRKIIVTGNPIRSSLIKM----KDIPYQSSDLDQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLV 220 (369)
Q Consensus 151 -----~~~~~~k~~~~G~PvR~~~~~~----~~~~~~~~~~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~ 220 (369)
...+..++.++.|+|..+.+.. +.........+....++++-|.+- -+.+. .+.+++..+.+. ..++.
T Consensus 149 ~~~~~~~~~~~~~~vI~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~-~li~a~~~l~~~-~~~~~ 226 (365)
T cd03807 149 EYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHA-TLLRAAALLLKK-FPNAR 226 (365)
T ss_pred HHHHHHCCCHHHEEEECCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH-HHHHHHHHHHHH-CCCEE
T ss_conf 9999819984568998998678866987036799999829998886999950465310156-788999998875-88827
Q ss_pred EEEEECCCCHHHHHHHH---HHCCCCCCCCCCCCCCHHHHHCCCEEEEC----CCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 77620255167765322---10011113454444514443004489972----542023334552960487533552489
Q gi|254781097|r 221 IMQQVREDDKEKVQKQY---DELGCKATLACFFKDIERYIVEANLLICR----SGALTVSEIAVIGRPAILVPYPHSVDQ 293 (369)
Q Consensus 221 v~~~~g~~~~~~~~~~~---~~~~~~~~v~~f~~~m~~~~~~aDlvIsr----aG~~Ti~E~~~~g~P~IlIP~p~a~~~ 293 (369)
++..+...+.+.+.... .....++.+.++.+|+.++|+.||+.|.- +-+.++.|++++|+|.|.-..+ +
T Consensus 227 l~i~G~g~~~~~~~~~~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~Egf~~~~lEAma~G~PvI~s~~g----g 302 (365)
T cd03807 227 LLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----D 302 (365)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCC----C
T ss_conf 999837855889999899975998739993663318999987160338870005332799999859999986799----8
Q ss_pred HHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 89998999998898899800019989999999998618999999999998527-832799999999999
Q gi|254781097|r 294 DQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKL 361 (369)
Q Consensus 294 hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~l 361 (369)
- .+.+.+ .|++++.. +.+.|++++..+++|++.+++|++++++.. .....+++++..+++
T Consensus 303 ~----~eii~~--~G~l~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~l 363 (365)
T cd03807 303 N----AELVGD--TGFLVPPG--DPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred C----HHEECC--CEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 4----114517--67997799--9999999999997799999999999999999868999999999997
No 29
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.78 E-value=1.4e-16 Score=135.36 Aligned_cols=334 Identities=16% Similarity=0.111 Sum_probs=183.8
Q ss_pred EEEEEC----CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 699987----8852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVA----GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~----gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||.|.+ ||.+=| +..|+++|.++||+|.+++...............++.+..... ..+. .....+..
T Consensus 2 kI~i~~~P~~GG~e~~---v~~La~~L~~~GHeV~vit~~~~~~~~~~~~~~~~~~v~~~~~---~~~~---~~~~~~~~ 72 (371)
T cd04962 2 KIGIVCYPTYGGSGVV---ATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQY---PLFQ---YPPYDLAL 72 (371)
T ss_pred EEEEECCCCCCCHHHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCC---CCCC---CCCCHHHH
T ss_conf 7999899999869999---9999999997599999995689876555689737998468776---5344---67213789
Q ss_pred CHHHHHHHHHCCCCEEEECCCC-CCHHHHHH---HHHCCCCCE--EECCCC-CCHHH------HHHHHHHHHHHHCCCCC
Q ss_conf 1013555420344424312653-21024788---862341101--221532-00156------77889999987413432
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGY-HSISPLLA---GMILRIPSM--VHEQNV-IMGKA------NRLLSWGVQIIARGLVS 148 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy-~s~P~~ia---A~~l~iP~v--ihEqN~-v~G~~------nk~l~~~a~~v~~~~~~ 148 (369)
..+..+++++++||+|-.-... ++....++ +...++|++ +|-++. ..|.. .++..+.++.+.+....
T Consensus 73 ~~~l~~~~~~~~~DvvH~h~~~p~~~~~~l~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~a~~vi~~S~~ 152 (371)
T cd04962 73 ASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHCCEEEECCHH
T ss_conf 99999999973998899725542679999999986447997899937985564214745668999999758989989999
Q ss_pred CC-----CCCCCCCCEEEECCCCHHHHHHHHHH--HHHHC-CCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 22-----23556673253044432456543334--43311-447814898630432-22102333445443232024660
Q gi|254781097|r 149 SQ-----KKVLLRKIIVTGNPIRSSLIKMKDIP--YQSSD-LDQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRL 219 (369)
Q Consensus 149 ~~-----~~~~~~k~~~~G~PvR~~~~~~~~~~--~~~~~-~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~ 219 (369)
.. ...+..++.++.|+|..+.+...... .+... .++.+.++-. |... -+.+. .+.+++..+.+... .
T Consensus 153 ~~~~~~~~~~~~~~i~vI~Ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~~v-grl~~~Kg~~-~ll~a~~~l~~~~~--~ 228 (371)
T cd04962 153 LRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHI-SNFRPVKRID-DVIRIFAKVRKEVP--A 228 (371)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHCCCCCCEEEEEE-CCCCHHCCHH-HHHHHHHHHHHCCC--E
T ss_conf 999999960999888998797573214888507899970999898599994-2650214969-99999998630576--5
Q ss_pred EEEEEECCCCHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 6776202551677653221001--11134544445144430044899725---4-2023334552960487533552489
Q gi|254781097|r 220 VIMQQVREDDKEKVQKQYDELG--CKATLACFFKDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQ 293 (369)
Q Consensus 220 ~v~~~~g~~~~~~~~~~~~~~~--~~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~ 293 (369)
.++..+...+.+.+++...+.+ .++.+.++.+++.++|+.||+.|.-+ | +.++.|++++|+|.|.-..+
T Consensus 229 ~l~ivG~G~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~adi~v~pS~~E~fg~vilEAma~G~PvIat~~g----- 303 (371)
T cd04962 229 RLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG----- 303 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC-----
T ss_conf 999982640377888888762103136632736559999985511138732443202599999569949986899-----
Q ss_pred HHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Q ss_conf 899989999988988998000199899999999986189999999999985278-327999999999999
Q gi|254781097|r 294 DQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK-PQAVLMLSDLVEKLA 362 (369)
Q Consensus 294 hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~-~~aa~~i~~~i~~la 362 (369)
...+.+.+...|++++.+ +++.|+++|..+++||+.+++|++++++... ..+-+.+++..+++=
T Consensus 304 ---g~~e~v~~g~~G~l~~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~iY 368 (371)
T cd04962 304 ---GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALY 368 (371)
T ss_pred ---CHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ---838997089718997899--99999999999976999999999999999998689999999999998
No 30
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.78 E-value=6.5e-16 Score=130.77 Aligned_cols=333 Identities=16% Similarity=0.153 Sum_probs=185.2
Q ss_pred CEEEE-ECC-CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCC--CCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 76999-878-8525620799999999965983999957237676244--4687516875256565331233211100012
Q gi|254781097|r 5 NVILL-VAG-GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITD--FPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 5 ~~ili-~~g-GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
+.|+. ..+ +.||=-.-.+.++++|.++++++.+++......+... ..+...+.+...+ ...+.
T Consensus 2 ~~IlhiI~~l~~GGaE~~~~~l~~~l~~~~~~~~vi~~~~~~~~~~~~~~~~v~~~~l~~~~------~~~~~------- 68 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQP------GKDVA------- 68 (374)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCEEEECCCCC------CCCHH-------
T ss_conf 88999908999982799999999978875993999997898457899986898899907887------64799-------
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCC-----CCHH--H----HHHHHHHHHHHHCCCCCC
Q ss_conf 1101355542034442431265321024788862341101221532-----0015--6----778899999874134322
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNV-----IMGK--A----NRLLSWGVQIIARGLVSS 149 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~-----v~G~--~----nk~l~~~a~~v~~~~~~~ 149 (369)
.+++..++++++|||+|-+. .+.++...++++..++|..+|-... ..|. . .|++.++++.+.+.....
T Consensus 69 ~~~~l~~li~~~kpDiIh~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~vs~~~ 147 (374)
T TIGR03088 69 VYPQLYRLLRQLRPDIVHTR-NLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDL 147 (374)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf 99999999998398489863-61169999999984998899960787543743105899999999998568899915899
Q ss_pred C------CCCCCCCCEEEECCCCHHHHHHHHHH----HHHH-CCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHH---
Q ss_conf 2------23556673253044432456543334----4331-14478148986304322-21023334454432320---
Q gi|254781097|r 150 Q------KKVLLRKIIVTGNPIRSSLIKMKDIP----YQSS-DLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEM--- 214 (369)
Q Consensus 150 ~------~~~~~~k~~~~G~PvR~~~~~~~~~~----~~~~-~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~--- 214 (369)
. -..+..++.++.|+|-.+.+...... .... ..++++ ++.+-|-+-. +.+. .+.+++..+.+.
T Consensus 148 ~~~~~~~~~~~~~ki~~I~Ngid~~~f~~~~~~~~~~~~~~~~~~~~~-~i~~vgRl~~~Kg~~-~li~a~~~l~~~~~~ 225 (374)
T TIGR03088 148 EDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESV-VVGTVGRLQAVKDQP-TLVRAFALLVRQLPE 225 (374)
T ss_pred HHHHHHHHCCCHHHEEEECCCCCHHHCCCCCCCHHHHHHHCCCCCCCE-EEEEEEECEEECCHH-HHHHHHHHHHHHCCC
T ss_conf 999998709987898996687765215877310677654315898776-999966340307879-999999999986777
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECC
Q ss_conf 2466067762025516776532210011--1134544445144430044899725---4-20233345529604875335
Q gi|254781097|r 215 QRKRLVIMQQVREDDKEKVQKQYDELGC--KATLACFFKDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYP 288 (369)
Q Consensus 215 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~--~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p 288 (369)
...++.++..+.....+++++...+.+. .+.+.++.+|+.++|+.||+.|.-| | +.++.|++++|+|.|.-.-
T Consensus 226 ~~~~~~l~i~G~G~~~~~l~~~i~~~~l~~~v~f~G~~~~~~~~~~~~Di~v~~S~~EGf~~~llEAma~g~PvIasdv- 304 (374)
T TIGR03088 226 GAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAV- 304 (374)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCCCEEECCC-
T ss_conf 6688899998177659999999997187775853787468999999639003134434467799999975997999189-
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf 52489899989999988988998000199899999999986189999999999985278-3279999999999998
Q gi|254781097|r 289 HSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK-PQAVLMLSDLVEKLAH 363 (369)
Q Consensus 289 ~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~-~~aa~~i~~~i~~la~ 363 (369)
++ +.+.+++.-.|++++.. +++.++++|..+++|++.+++|++++++... ..+.+++++..+++=+
T Consensus 305 ---gg----~~eii~~~~~G~l~~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~v~~~Fs~~~~~~~~~~lY~ 371 (374)
T TIGR03088 305 ---GG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred ---CC----HHHHHCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf ---98----18986179868997899--999999999999779999999999999999987899999999999999
No 31
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.78 E-value=4e-16 Score=132.27 Aligned_cols=318 Identities=17% Similarity=0.198 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 88525620799999999965983999957237676244468751687525656533123321110001211013555420
Q gi|254781097|r 12 GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKK 91 (369)
Q Consensus 12 gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 91 (369)
||.+=| ...|+++|.++||+|.+++................... ....++ .......+.++.
T Consensus 13 GGi~~~---~~~La~~L~~~Gh~V~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~~~~~~~i~~ 74 (366)
T cd03822 13 CGIATF---TTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRV----IVLDNP-----------LDYRRAARAIRL 74 (366)
T ss_pred CCHHHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEE----CCCCCC-----------HHHHHHHHHHHH
T ss_conf 838999---99999999867998999958888875444677641676----036673-----------259999999985
Q ss_pred CCCCEEEEC--CCCCC-H---HHHHHHHHCCCCCEEECCCCCCH---H----HHHHHHHHHHHHHCCCCCC----CCCCC
Q ss_conf 344424312--65321-0---24788862341101221532001---5----6778899999874134322----22355
Q gi|254781097|r 92 LKPNVVVGF--GGYHS-I---SPLLAGMILRIPSMVHEQNVIMG---K----ANRLLSWGVQIIARGLVSS----QKKVL 154 (369)
Q Consensus 92 ~kPDvVi~t--GGy~s-~---P~~iaA~~l~iP~vihEqN~v~G---~----~nk~l~~~a~~v~~~~~~~----~~~~~ 154 (369)
.+||+|+.. .|+.+ . ....+++..++|++....+.... . ..+.+.+.++.+.+..... ....+
T Consensus 75 ~~~Dvvh~~~~~~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~ 154 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAY 154 (366)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCC
T ss_conf 39999999365332106689999999985599899997777655422779999999998679999957999999986469
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC---
Q ss_conf 6673253044432456543334433114478148986304322-21023334454432320246606776202--55---
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVR--ED--- 228 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g--~~--- 228 (369)
..++.++.+++.................++++.|+.+ |-+.- +.+ +.+.+++..+.+.. .++.++..+. ..
T Consensus 155 ~~~i~vIpngv~~~~~~~~~~~~~~~~~~~~~~il~~-Grl~~~Kg~-~~li~A~~~l~~~~-~~~~l~ivG~~~~~~~~ 231 (366)
T cd03822 155 PEKIAVIPHGVPDPPAEPPESLKALGGLDGRPVLLTF-GLLRPYKGL-ELLLEALPLLVAKH-PDVRLLVAGETHPDLER 231 (366)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEE-ECCCCCCCH-HHHHHHHHHHHHHC-CCEEEEEEECCCCCHHH
T ss_conf 8739996799875455886778874589998599998-534055485-99999999988768-98599999589874266
Q ss_pred CHHHHHHHHHHCC--CCCCCC-CCC--CCCHHHHHCCCEEEEC--CCC----HHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 1677653221001--111345-444--4514443004489972--542----0233345529604875335524898999
Q gi|254781097|r 229 DKEKVQKQYDELG--CKATLA-CFF--KDIERYIVEANLLICR--SGA----LTVSEIAVIGRPAILVPYPHSVDQDQLH 297 (369)
Q Consensus 229 ~~~~~~~~~~~~~--~~~~v~-~f~--~~m~~~~~~aDlvIsr--aG~----~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~ 297 (369)
...++.....+.+ .++.+. +|+ ++++++|+.||+++.- ..+ +++.|++++|+|.|.-..+ +
T Consensus 232 ~~~~~~~~~~~lgl~~~V~f~~g~v~~~~~~~~~~~adv~v~Ps~~e~~~~s~v~~EAma~G~PvVat~~g----g---- 303 (366)
T cd03822 232 YRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVG----H---- 303 (366)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC----C----
T ss_conf 78999999997399765532478889999999999557030555466544569999999749989990899----7----
Q ss_pred HHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999998898899800019989999999998618999999999998527832799999999999
Q gi|254781097|r 298 NAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 298 NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
...+.+.+.|++++.. +++.|+++|..+++||+.+++|++++++......-+++++..+++
T Consensus 304 -~~ev~~~~~G~lv~~~--d~~~la~ai~~ll~d~~~r~~l~~~a~~~a~~~sW~~ia~~~~~l 364 (366)
T cd03822 304 -AEEVLDGGTGLLVPPG--DPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRL 364 (366)
T ss_pred -HHEEECCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -4408839968998999--999999999999879999999999999999979999999999998
No 32
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.78 E-value=5e-16 Score=131.60 Aligned_cols=327 Identities=12% Similarity=0.123 Sum_probs=193.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 76999878852562079999999996598399995723767624446875168752565653312332111000121101
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
..-.|+||...|-+. +-.+.++|+++.+++.|.+-++-....+.. ...+... .+.--+....+..+.++++-+.+
T Consensus 227 ~~~FI~AGE~SGD~l-Ga~Li~~Lk~~~P~i~F~GVGGp~M~~eGl--~slf~me--~lsVMG~~EVL~~lp~L~~~~~~ 301 (607)
T PRK01021 227 TSCFLSAGEASGDTL-GGNLLKEIKALYPDIRCFGVGGPQMRQEGL--EPLFNME--EFQVSGFWEVLLSLFKLYYRYRK 301 (607)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEECCHHHHHHCCC--CCCCCHH--HCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 875799268625577-999999998549898899637799987688--6124467--71011489999889999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHC--CC--CCEEECCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCC--
Q ss_conf 3555420344424312653210247888623--41--101221532----0015677889999987413432222355--
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMIL--RI--PSMVHEQNV----IMGKANRLLSWGVQIIARGLVSSQKKVL-- 154 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l--~i--P~vihEqN~----v~G~~nk~l~~~a~~v~~~~~~~~~~~~-- 154 (369)
..+.+.+.+||++|+. .|..|-..++.+++ ++ |++.+=.-. .+||+ |-+.++.|.+++-||-..+.+.
T Consensus 302 l~~~i~~~~PD~~I~I-D~PdFNlrlak~lkk~gi~ik~vhYVsPsVWAWr~~R~-k~i~~~vD~~l~lfPFE~~~~~~~ 379 (607)
T PRK01021 302 LYKTILKENPETVICI-DFPDFHFLLIKKLRKCGYKGKIIHYVCPSIWAWRPKRK-TILEKYLDLLLLILPFEQGLFKNS 379 (607)
T ss_pred HHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCHH-HHHHHHHHHHEECCCCCHHHHHCC
T ss_conf 9999986199999995-89987889999999728999868997883688662179-999998867305267788999507
Q ss_pred CCCCEEEECCCCHHHHHHHHHHH--HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEECCCCH
Q ss_conf 66732530444324565433344--33114478148986304322210233344544323--202466067762025516
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKDIPY--QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIP--EMQRKRLVIMQQVREDDK 230 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~~~~--~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~--~~~~~~~~v~~~~g~~~~ 230 (369)
.-++.+||+|+-++....++... ......++..|.++-||-.+.. .+.++-.+..+. .....+..++........
T Consensus 380 g~~~~yVGHPl~e~i~~~~~~~~~r~~l~~~~k~IIALLPGSR~SEI-~RlLPI~~~ai~~~~l~~~~~~lV~~a~p~~~ 458 (607)
T PRK01021 380 PLRTVYLGHPLVETISNFQPCASWKEQLLPSDKPIVAAFPGSRRGDI-LRNLTIQVQAFLASSLAQTHQLLVSSANPKYD 458 (607)
T ss_pred CCCCEEECCCCHHHCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 99837978960120223477456998617788988999089978999-98749999999987244676499956876688
Q ss_pred HHHHHHHHHCC-CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC----
Q ss_conf 77653221001-1113454444514443004489972542023334552960487533552489899989999988----
Q gi|254781097|r 231 EKVQKQYDELG-CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG---- 305 (369)
Q Consensus 231 ~~~~~~~~~~~-~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~---- 305 (369)
+.+.+.....+ .+..+.+ .+.-.++|++||++++.||..|+ |++.+|+|||.+ |.- .-=-+.-|+++.+.
T Consensus 459 ~~i~e~l~~~~~~~~~II~-~~~kyeam~aSDaALaASGTATL-E~ALagvPmVVa-YKl--npLTyfIAK~LvKI~lp~ 533 (607)
T PRK01021 459 HLILDVLQQEGCLHSKIVP-SQFRYELMRECDCALAKCGTIVL-ETALNQTPTIVT-CQL--RPFDTFLAKYIFKILLPA 533 (607)
T ss_pred HHHHHHHHHCCCCCCEECC-CHHHHHHHHHCCEEEECCCHHHH-HHHHHCCCEEEE-EEC--CHHHHHHHHHHHHHCCCC
T ss_conf 9999999864898845717-32589999858899888778999-999838898999-967--827999999999725751
Q ss_pred -C-----CEE-E----E-EHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf -9-----889-9----8-0001998999999999861899999999999852
Q gi|254781097|r 306 -G-----GAK-V----I-TENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK 345 (369)
Q Consensus 306 -G-----~a~-~----i-~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~ 345 (369)
+ ++. + + .|+|.+||+++.++ .+++||+.+++=.+.+++.
T Consensus 534 vsLPNILagr~VVPElI~gQ~D~~PE~iAaAl-~lL~~p~~~ekq~~~c~~~ 584 (607)
T PRK01021 534 YSLPNIILGSVIFPEFIGGKKDFHPEEVAAAL-DILKTSQSKEKQKEACRDL 584 (607)
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_conf 21130116998666636776658989999999-9871915679999999999
No 33
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.77 E-value=3.4e-16 Score=132.72 Aligned_cols=334 Identities=16% Similarity=0.127 Sum_probs=176.1
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||++.+. .+||--.-+..++++|.++||+|++++....................... ........ ......
T Consensus 1 KIl~i~~~~~P~~GG~e~~~~~la~~L~~~Gh~V~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~ 75 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSIN--VAYGLNLA---RYLFPP 75 (375)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCCC--CCCCCHHH---HHHHHH
T ss_conf 9899959889999989999999999999779989999707987643102467516741665--55420133---322206
Q ss_pred CHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCCCEEECCCCCCH--HHH----HHHH-HH--------HHHHHC
Q ss_conf 1013555420344424312653--21024788862341101221532001--567----7889-99--------998741
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGY--HSISPLLAGMILRIPSMVHEQNVIMG--KAN----RLLS-WG--------VQIIAR 144 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy--~s~P~~iaA~~l~iP~vihEqN~v~G--~~n----k~l~-~~--------a~~v~~ 144 (369)
...........+||+|.+.|-+ ..+.+...++..++|+++...+.... ..+ +++. .. ++.+.+
T Consensus 76 ~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 76 SLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 89999998548999999868625669999999998499699997998603444434678889999999998740869997
Q ss_pred CCCC----CCCCCCCCCCEEEECCCCHHHHHHHHHHH--HHHC-CCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCC
Q ss_conf 3432----22235566732530444324565433344--3311-4478148986304322-2102333445443232024
Q gi|254781097|r 145 GLVS----SQKKVLLRKIIVTGNPIRSSLIKMKDIPY--QSSD-LDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQR 216 (369)
Q Consensus 145 ~~~~----~~~~~~~~k~~~~G~PvR~~~~~~~~~~~--~~~~-~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~ 216 (369)
+... .....+..++.++.|.|..+.+...+... .... .++.+ ++++-|.... +.+ +.+.+++..+.+..
T Consensus 156 ~s~~~~~~~~~~~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~~~~-~il~vGRl~~~Kg~-~~li~a~~~l~~~~- 232 (375)
T cd03821 156 TSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKR-IILFLGRLHPKKGL-DLLIEAFAKLAERF- 232 (375)
T ss_pred CCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCC-EEEEEEECCCCHHH-HHHHHHHHHHHHHC-
T ss_conf 6579999999628988889986972720148862378898548998983-89998713432147-78999999999767-
Q ss_pred CCCEEEEEE-CCCCH-HHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEE
Q ss_conf 660677620-25516-7765322100--1111345444--45144430044899725----4202333455296048753
Q gi|254781097|r 217 KRLVIMQQV-REDDK-EKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICRS----GALTVSEIAVIGRPAILVP 286 (369)
Q Consensus 217 ~~~~v~~~~-g~~~~-~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP 286 (369)
.++.++..+ |.... +.++....+. ..++.+.+|+ +++.++|+.||++|.-+ -+.++.|++++|+|.|.-.
T Consensus 233 ~~~~l~ivG~g~~~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~~~adi~v~pS~~Egf~~~~lEAma~G~PvIas~ 312 (375)
T cd03821 233 PDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD 312 (375)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 98599999789826789999999982678558534776831109898515001468477664589999998599999927
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf 355248989998999998898899800019989999999998618999999999998527-8327999999999
Q gi|254781097|r 287 YPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVE 359 (369)
Q Consensus 287 ~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~ 359 (369)
. ++- .+ +.+.|++.+++. +++.++++|..+++|++.+++|++++++.. ....-+++++..+
T Consensus 313 ~----gg~----~e-ii~~~~g~~~~~---~~~~l~~~i~~l~~d~~~~~~~~~~ar~~~~~~fsw~~~~~~~~ 374 (375)
T cd03821 313 K----VPW----QE-LIEYGCGWVVDD---DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred C----CCC----HH-EEECCCEEEECC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9----980----77-287884899492---99999999999976999999999999999999589999999974
No 34
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.77 E-value=3.7e-16 Score=132.46 Aligned_cols=333 Identities=16% Similarity=0.171 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHC---CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 852562079999999996598399995723767624---44687516875256565331233211100012110135554
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT---DFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLI 89 (369)
Q Consensus 13 GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii 89 (369)
.|||--.-+..|+++|.++||+|.++|......... ...+..++.++..+.+.......+..+..+...+.. ....
T Consensus 19 d~GG~e~~v~~La~~L~~~GH~V~V~t~~~~~~~~~~~~~~~gv~v~rl~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~ 97 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLR-FLRR 97 (398)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 968879999999999998699699997247778888068249869999557885433277778789999999999-9998
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE--ECCC----CCCH------HHH-----HHHHHHHHHHHCCCCCCC--
Q ss_conf 20344424312653210247888623411012--2153----2001------567-----788999998741343222--
Q gi|254781097|r 90 KKLKPNVVVGFGGYHSISPLLAGMILRIPSMV--HEQN----VIMG------KAN-----RLLSWGVQIIARGLVSSQ-- 150 (369)
Q Consensus 90 ~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi--hEqN----~v~G------~~n-----k~l~~~a~~v~~~~~~~~-- 150 (369)
+..+||+|.+-....++.+..+++.+++|++. |.-. ...+ ... +...+.++.+.+..+...
T Consensus 98 ~~~~pDvIH~h~~~~~~~~~~~~~~~~ip~V~t~H~l~~~~~~~~~~~~~~~~~~r~~~e~~~~~~ad~via~S~~~~~~ 177 (398)
T cd03800 98 EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEE 177 (398)
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHH
T ss_conf 38998889988840789999999971999999637511444332023554234789999999998499999879999999
Q ss_pred --C--CCCCCCCEEEECCCCHHHHHHH---HHHHHHHCCC-CCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf --2--3556673253044432456543---3344331144-78148986304322-210233344544323202466067
Q gi|254781097|r 151 --K--KVLLRKIIVTGNPIRSSLIKMK---DIPYQSSDLD-QPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVI 221 (369)
Q Consensus 151 --~--~~~~~k~~~~G~PvR~~~~~~~---~~~~~~~~~~-~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v 221 (369)
+ ..+.+++.++.|.|..+.+... .....+.... +.+.|+.. |.+.. +.+ +.+.+++..+.... .+..+
T Consensus 178 ~~~~~~~~~~~i~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~i~~v-GRl~~~Kg~-~~li~A~~~l~~~~-~~~~l 254 (398)
T cd03800 178 LYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAV-GRLDPRKGI-DTLIRAYAELPELR-ERANL 254 (398)
T ss_pred HHHHHCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHCCCCCCCEEEEE-CCCCHHCCH-HHHHHHHHHHHHHC-CCCEE
T ss_conf 9997299902289976986774438898058999860899899489998-289602098-99999999988778-99689
Q ss_pred EEEECCC-C-----HHHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEEC
Q ss_conf 7620255-1-----67765322100--1111345444--45144430044899725---4-2023334552960487533
Q gi|254781097|r 222 MQQVRED-D-----KEKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPY 287 (369)
Q Consensus 222 ~~~~g~~-~-----~~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~ 287 (369)
+..+|.. + ...+.+..... ..++.+.+++ ++++++|+.||+++.-| | +.++.|++++|+|.|.-..
T Consensus 255 ~ivGg~~~~~~~~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~~~adv~v~pS~~E~fgl~~lEAma~G~PvIas~~ 334 (398)
T cd03800 255 VIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAV 334 (398)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 99968876531345999999999759987499889899899999998578887545133221489999982999999389
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q ss_conf 5524898999899999889889980001998999999999861899999999999852783-27999999999
Q gi|254781097|r 288 PHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP-QAVLMLSDLVE 359 (369)
Q Consensus 288 p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~-~aa~~i~~~i~ 359 (369)
++ ..+.+++...|++++.. +++.|+++|..+++||+.+++|++++++.... ..-+++++.++
T Consensus 335 ----gg----~~e~v~~g~~G~l~~~~--d~~~la~ai~~ll~d~~~~~~~g~~ar~~~~~~fsw~~~a~~~l 397 (398)
T cd03800 335 ----GG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred ----CC----CHHHHCCCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf ----98----07774179718997899--99999999999977999999999999999998689999999974
No 35
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.76 E-value=7.6e-16 Score=130.30 Aligned_cols=320 Identities=15% Similarity=0.150 Sum_probs=177.9
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||.|.+. ++..| -..++++|.++||+|.+++........... . ......... .. ...+..+ ..
T Consensus 1 ki~~v~~~~P~~~etf---v~~la~~L~~~GHeV~v~~~~~~~~~~~~~--~--~~~~~~~~~-~~----~~~~~~~-~~ 67 (355)
T cd03799 1 KIAYLVKEFPRLSETF---ILREILALEAAGHEVEIFSLRPPEDTLVHP--E--DRAELARTR-YL----ARSLALL-AQ 67 (355)
T ss_pred CEEEECCCCCCCCCHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCC--C--CCCEECCCC-CC----HHHHHHH-HH
T ss_conf 9899989898996179---999999999679849999534887773064--3--021215521-54----7779999-99
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHCCCCCEE--ECCCCCCHHHHHH---HHHHHHHH-HCCCCCCC----
Q ss_conf 101355542034442431265321-0247888623411012--2153200156778---89999987-41343222----
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHS-ISPLLAGMILRIPSMV--HEQNVIMGKANRL---LSWGVQII-ARGLVSSQ---- 150 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s-~P~~iaA~~l~iP~vi--hEqN~v~G~~nk~---l~~~a~~v-~~~~~~~~---- 150 (369)
.....+.+++++||+|-+--.+.+ ....+++++.++|+++ |-.+......... ..+.++.+ ++| ....
T Consensus 68 ~~~l~~~i~~~~~DiIH~H~~~~~~~~~~~~~~~~~ip~v~t~Hg~d~~~~~~~~~l~~~~~~ad~ii~vS-~~~~~~l~ 146 (355)
T cd03799 68 ALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAIS-EYNRQQLI 146 (355)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEECC-HHHHHHHH
T ss_conf 99999999777998999768833799999999974999999981676556736899999998399999989-99999999
Q ss_pred --CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf --23556673253044432456543334433114478148986304322-210233344544323202466067762025
Q gi|254781097|r 151 --KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 151 --~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
-..+.+|+.++.|.|..+.+.... ....++++.|+.. |.+.. +.+ +.+.+++..+.+. ..++.++..+..
T Consensus 147 ~~~~~~~~ki~vi~ngvd~~~f~~~~----~~~~~~~~~il~v-Grl~~~Kg~-~~li~A~~~l~~~-~~~~~l~ivG~G 219 (355)
T cd03799 147 RLLGCDPDKIHVVHCGVDLERFPPRP----PPPPGEPLRILSV-GRLVEKKGL-DYLLEALALLKDR-GIDFRLDIVGDG 219 (355)
T ss_pred HHCCCCHHHEEEECCCCCHHHCCCCC----CCCCCCCEEEEEE-ECCCHHCCC-HHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf 86099914689989964888879987----5577898699998-158021190-9999999999864-999799996676
Q ss_pred CCHHHHHHHHHHCC--CCCCCCCCC--CCCHHHHHCCCEEEE--CC-------C-CHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 51677653221001--111345444--451444300448997--25-------4-2023334552960487533552489
Q gi|254781097|r 228 DDKEKVQKQYDELG--CKATLACFF--KDIERYIVEANLLIC--RS-------G-ALTVSEIAVIGRPAILVPYPHSVDQ 293 (369)
Q Consensus 228 ~~~~~~~~~~~~~~--~~~~v~~f~--~~m~~~~~~aDlvIs--ra-------G-~~Ti~E~~~~g~P~IlIP~p~a~~~ 293 (369)
...+.++....+.+ .++.+.+|+ ++++++|+.||+.|. +. | +.++.|++++|+|.|.-..+ +
T Consensus 220 ~~~~~l~~~~~~l~l~~~V~f~G~v~~~~l~~~~~~adv~v~pS~~~~~~~~Eg~p~~~lEAma~G~PvVas~~~----g 295 (355)
T cd03799 220 PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----G 295 (355)
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCC----C
T ss_conf 048899999997499855076444464767999974989998452335677668777999999669989991799----8
Q ss_pred HHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHH
Q ss_conf 89998999998898899800019989999999998618999999999998527-8327999999
Q gi|254781097|r 294 DQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSD 356 (369)
Q Consensus 294 hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~ 356 (369)
..+.+++...|++++.. +++.|+++|..+++||+.+++|++++++.. .....+++++
T Consensus 296 ----~~e~v~~g~~G~l~~~~--d~~~la~~i~~ll~d~~~~~~~~~~ar~~v~~~fs~~~~a~ 353 (355)
T cd03799 296 ----IPELVEDGETGLLVPPG--DPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAA 353 (355)
T ss_pred ----CHHHHCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf ----57662289858997999--99999999999987999999999999999998699599994
No 36
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.76 E-value=2e-16 Score=134.34 Aligned_cols=310 Identities=15% Similarity=0.109 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 85256207999999999659839999572376762444687516875256565331233211100012110135554203
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKL 92 (369)
Q Consensus 13 GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~ 92 (369)
++||=-.-+..++++|.++||+|.+++..+-........+...+.+ ...+.+++.. +..+....++++++
T Consensus 8 ~~GGaE~~~~~La~~L~~~Gh~V~vi~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-------~~~~~~l~~~l~~~ 77 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKL---PFISKNPLRI-------LLNVARLRRLIREE 77 (355)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCEEEEE---CCCCCCCHHH-------HHHHHHHHHHHHHH
T ss_conf 9941799999999999987998999968998715566349669991---7877882899-------99999999999996
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCH--HHHHHHHHHHHHH-HCCCCCCC------CCCCCCCCEEEEC
Q ss_conf 4442431265321024788862341101221532001--5677889999987-41343222------2355667325304
Q gi|254781097|r 93 KPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMG--KANRLLSWGVQII-ARGLVSSQ------KKVLLRKIIVTGN 163 (369)
Q Consensus 93 kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G--~~nk~l~~~a~~v-~~~~~~~~------~~~~~~k~~~~G~ 163 (369)
+||+|.+...+.++...+|++..++|++.+..+.... .-++++. .++.+ +++ .... -..+.+++.++-|
T Consensus 78 ~~Divh~h~~~~~~~~~~a~~~~~~~~i~t~H~~~~~~~~~~~~~~-~~~~~i~~S-~~~~~~~~~~~~~~~~ki~vI~n 155 (355)
T cd03819 78 KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMA-RGDRVIAVS-NFIADHIRENYGVDPDRIRVIPR 155 (355)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-HCCEEEEEC-HHHHHHHHHHHCCCHHHEEEECC
T ss_conf 9989997786449999999985399789996787740679999997-279899945-89999999973998789999788
Q ss_pred CCCHHHHHHHH-------HHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC----HH
Q ss_conf 44324565433-------3443311447814898630432-221023334454432320246606776202551----67
Q gi|254781097|r 164 PIRSSLIKMKD-------IPYQSSDLDQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLVIMQQVREDD----KE 231 (369)
Q Consensus 164 PvR~~~~~~~~-------~~~~~~~~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~----~~ 231 (369)
+|..+.+.... .............++++-|.+- -+.+ ..+.+++..+.+.. ..+.++..++... .+
T Consensus 156 gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGRl~~~Kg~-~~li~a~~~l~~~~-~~~~l~i~G~g~~~~~~~~ 233 (355)
T cd03819 156 GVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQ-EVFIEALARLKKDD-PDVHLLIVGDAQGRRFYYA 233 (355)
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHH
T ss_conf 756542387778778899999862899998799996166544576-99999999998648-9979999707864168999
Q ss_pred HHHHHHHHC--CCCCCCCCCCCCCHHHHHCCCEEE--E-C-CC-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 765322100--111134544445144430044899--7-2-54-202333455296048753355248989998999998
Q gi|254781097|r 232 KVQKQYDEL--GCKATLACFFKDIERYIVEANLLI--C-R-SG-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE 304 (369)
Q Consensus 232 ~~~~~~~~~--~~~~~v~~f~~~m~~~~~~aDlvI--s-r-aG-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~ 304 (369)
++.+..... ..++.+.+|++|+.++|+.||++| | + -| +.++.|++++|+|.|.--. ++ ..+.+++
T Consensus 234 ~~~~~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~~Egf~~vllEAma~G~PvV~s~~----gg----~~eii~~ 305 (355)
T cd03819 234 ELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GG----ARETVRP 305 (355)
T ss_pred HHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC----CC----CHHHCCC
T ss_conf 999999981997628865762146899874032558877710000789999986998999089----99----4766158
Q ss_pred CCCEEEEEHHCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
Q ss_conf 89889980001998999999999861-8999999999998527
Q gi|254781097|r 305 GGGAKVITENFLSPERLAEELCSAMK-KPSCLVQMAKQVSMKG 346 (369)
Q Consensus 305 ~G~a~~i~~~~~~~~~l~~~i~~ll~-d~~~l~~m~~~~~~~~ 346 (369)
...|++++.. +++.|++++..+++ ||+.+++|++++++..
T Consensus 306 ~~~G~l~~~~--d~~~l~~~i~~~l~~~~~~r~~~~~~ar~~~ 346 (355)
T cd03819 306 GETGLLVPPG--DAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CCCEEEECCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9978998899--9999999999998699999999999999999
No 37
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.76 E-value=7.2e-16 Score=130.45 Aligned_cols=333 Identities=15% Similarity=0.155 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCC-CCCEEEEECCCCCCCCHHH-HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 52562079999999996598399995723767624446-8751687525656533123-321110001211013555420
Q gi|254781097|r 14 TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFP-ADSIYEIVSSQVRFSNPFV-FWNSLVILWKAFIASLRLIKK 91 (369)
Q Consensus 14 TGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ii~~ 91 (369)
+||.-.....++++|.++||+|.+++............ ................... ...........+.. ....++
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 91 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLK-LLKLKR 91 (377)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHC
T ss_conf 8949999999999999779969999537987531231257520003445455444331046677899999999-999746
Q ss_pred CCCCEEEECCCCCC-HHHHHHHHHCCCCCEE--ECCCCCCHH-------HHHHHHHHHHHHHCCCCCCCC-----CCCCC
Q ss_conf 34442431265321-0247888623411012--215320015-------677889999987413432222-----35566
Q gi|254781097|r 92 LKPNVVVGFGGYHS-ISPLLAGMILRIPSMV--HEQNVIMGK-------ANRLLSWGVQIIARGLVSSQK-----KVLLR 156 (369)
Q Consensus 92 ~kPDvVi~tGGy~s-~P~~iaA~~l~iP~vi--hEqN~v~G~-------~nk~l~~~a~~v~~~~~~~~~-----~~~~~ 156 (369)
.+||+|.+..-+.. +.+..+++..++|+++ |......-. -.++..+.++.+.+..+...+ ..+..
T Consensus 92 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~ 171 (377)
T cd03798 92 FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPE 171 (377)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCC
T ss_conf 99868997884067999999999739988999677414310231689999999998589999889899999998589965
Q ss_pred CCEEEECCCCHHHHHHHHHH-HHHHCC-CCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 73253044432456543334-433114-478148986304322-210233344544323202466067762025516776
Q gi|254781097|r 157 KIIVTGNPIRSSLIKMKDIP-YQSSDL-DQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKV 233 (369)
Q Consensus 157 k~~~~G~PvR~~~~~~~~~~-~~~~~~-~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~ 233 (369)
++.++.|.+..+.+...+.. ...... ++++ ++++-|..+- +.+. .+.+++..+.+. ..++.++..+.....+.+
T Consensus 172 ~i~vi~ngid~~~f~~~~~~~~~~~~~~~~~~-~i~~~Grl~~~Kg~~-~li~a~~~l~~~-~~~~~l~i~G~g~~~~~l 248 (377)
T cd03798 172 KVTVIPNGVDTERFSPADRAEARKLGLPEDKK-VILFVGRLVPRKGID-YLIEALARLLKK-RPDVHLVIVGDGPLREAL 248 (377)
T ss_pred CEEEECCCCCHHHCCCCCHHHHHHHCCCCCCE-EEEEEEECCCCCCCH-HHHHHHHHHHHH-CCCCEEEECCCCHHHHHH
T ss_conf 59998897578754988777898608999985-999982452001828-999999998874-888522432682788899
Q ss_pred HHHHHHC--CCCCCCCCCCC--CCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 5322100--11113454444--5144430044899725----42023334552960487533552489899989999988
Q gi|254781097|r 234 QKQYDEL--GCKATLACFFK--DIERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG 305 (369)
Q Consensus 234 ~~~~~~~--~~~~~v~~f~~--~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~ 305 (369)
++...+. ..++.+.+|++ ++.++|+.||+.|.-+ -+.++.|++++|+|.|.-+.+ .+++.+.+.
T Consensus 249 ~~~~~~~~l~~~v~~~g~v~~~~~~~~~~~adv~v~pS~~E~~~~~~lEama~G~PvI~~~~g--------g~~e~i~~~ 320 (377)
T cd03798 249 EALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG--------GIPEIITDG 320 (377)
T ss_pred HHHHHHCCCCCEEEECCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC--------CHHHHHCCC
T ss_conf 999886188736986052100101013333774137855765125589999759979995899--------869985179
Q ss_pred CCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
Q ss_conf 98899800019989999999998618999999999998527-8327999999999999
Q gi|254781097|r 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKLA 362 (369)
Q Consensus 306 G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~la 362 (369)
+.|++++.+ +++.|+++|.++++|++. +|++++++.. ....-+.+++..+++=
T Consensus 321 ~~G~~~~~~--~~~~l~~~i~~l~~~~~~--~~~~~~~~~~~~~fs~~~~~~~~~~~y 374 (377)
T cd03798 321 ENGLLVPPG--DPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLLELY 374 (377)
T ss_pred CEEEEECCC--CHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 749997999--999999999999879999--999999999998699999999999998
No 38
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.75 E-value=5.3e-16 Score=131.38 Aligned_cols=313 Identities=19% Similarity=0.153 Sum_probs=173.7
Q ss_pred EEEEC-C-CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH----HHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99987-8-85256207999999999659839999572376----762444687516875256565331233211100012
Q gi|254781097|r 7 ILLVA-G-GTGGHVFPAVALSHELKNRGYAVYLITDRRAR----SFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 7 ili~~-g-GTGGHi~palala~~L~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
|++.. + +.||=-.-.+.++++|.++|++|.+++..... ..+.. .+...+.+.. ...+. +.
T Consensus 2 IL~vi~~l~~GGaE~~~~~L~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-~g~~v~~~~~---~~~~~----------~~ 67 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK-LGGKIYYIPA---RKKNP----------LK 67 (358)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-CCCEEEECCC---CCCCH----------HH
T ss_conf 8999499999118999999999998769989999987987636899997-5997999389---76428----------99
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCE-EECCCCCC--HHHH---------HHHHHHHHH-HHCCCC
Q ss_conf 1101355542034442431265321024788862341101-22153200--1567---------788999998-741343
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM-VHEQNVIM--GKAN---------RLLSWGVQI-IARGLV 147 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~v-ihEqN~v~--G~~n---------k~l~~~a~~-v~~~~~ 147 (369)
.+...++++++.+||+|.+-+.+.++-..++++..++|.+ .|.-|... .... +++.++++. ++++-.
T Consensus 68 ~~~~l~~~i~~~~~DiIh~h~~~~~~~~~~~~~~~~~~~~I~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iavS~~ 147 (358)
T cd03812 68 YFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEE 147 (358)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECHH
T ss_conf 99999999998399999985750689999999985999899985787445431678999999999999869999995889
Q ss_pred C---CCCCCCCCCCEEEECCCCHHHHHHH---HHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 2---2223556673253044432456543---33443311447814898630432-221023334454432320246606
Q gi|254781097|r 148 S---SQKKVLLRKIIVTGNPIRSSLIKMK---DIPYQSSDLDQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLV 220 (369)
Q Consensus 148 ~---~~~~~~~~k~~~~G~PvR~~~~~~~---~~~~~~~~~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~ 220 (369)
. .....+..++.++-|+|..+-+... ....+.........++.+-|.+- .+.+ ..+.+++..+.+. .+++.
T Consensus 148 ~~~~l~~~~~~~ki~vI~NgId~~~~~~~~~~~~~~~~~~~~~~~~vi~~vGRl~~~Kg~-~~Li~A~~~l~~~-~~~~~ 225 (358)
T cd03812 148 AGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNH-EFLIEIFAELLKK-NPNAK 225 (358)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHCC-HHHHHHHHHHHHH-CCCCE
T ss_conf 999997316878789986980744238754668999983899898699996047665171-8899999986510-88823
Q ss_pred EEEEECCCCHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 77620255167765322100--111134544445144430044899725---4-20233345529604875335524898
Q gi|254781097|r 221 IMQQVREDDKEKVQKQYDEL--GCKATLACFFKDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQD 294 (369)
Q Consensus 221 v~~~~g~~~~~~~~~~~~~~--~~~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~h 294 (369)
++..+.....+.+++...+. ..++.+.+|.+|++++|+.||++|.-| | +.++.|++++|+|.|.---+ +
T Consensus 226 l~ivG~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~~aDi~v~pS~~Egf~~v~lEAma~G~PVVasd~g----g- 300 (358)
T cd03812 226 LLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTI----T- 300 (358)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCC----C-
T ss_conf 99962752787899999982987249974670137899973989997487678847999999949989996599----9-
Q ss_pred HHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99989999988988998000199899999999986189999999999985278
Q gi|254781097|r 295 QLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK 347 (369)
Q Consensus 295 Q~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~ 347 (369)
.+.+.+.+.+.+++.+ +++.++++|.+|++||+ +++|+++.+....
T Consensus 301 ----~~~ii~~~~~~l~~~~--~~~~~a~~I~~l~~~~~-~~~~~~~~~~~~~ 346 (358)
T cd03812 301 ----KEVDLTDLVKFLSLDE--SPEIWAEEILKLKSEDR-RERSSESIKKKGL 346 (358)
T ss_pred ----CCEEEECCCCEEECCC--CHHHHHHHHHHHHCCHH-HHHHHHHHHHCCC
T ss_conf ----7469729955796899--99999999999865836-7999999998599
No 39
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.75 E-value=5.1e-16 Score=131.52 Aligned_cols=337 Identities=12% Similarity=0.095 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH---HHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 52562079999999996598399995723767---624446875168752565653312332111000121101355542
Q gi|254781097|r 14 TGGHVFPAVALSHELKNRGYAVYLITDRRARS---FITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIK 90 (369)
Q Consensus 14 TGGHi~palala~~L~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 90 (369)
|||--.-...|+++|.++||+|.++|...... .....++.....+...++...........+..+...+.+.....+
T Consensus 19 ~GG~e~~v~~La~~La~rGheV~V~t~~~~~~~~~~~~~~~gv~v~~~~~~p~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58869999999999997899699993588877888467049849998257862324566769999999999999999856
Q ss_pred HCCCCEEEECCCCCC-HHHHHHHHHCCCCCEE--ECCCCC----C--H-----HHH----HHHHHHHHHHHCCCCCCCC-
Q ss_conf 034442431265321-0247888623411012--215320----0--1-----567----7889999987413432222-
Q gi|254781097|r 91 KLKPNVVVGFGGYHS-ISPLLAGMILRIPSMV--HEQNVI----M--G-----KAN----RLLSWGVQIIARGLVSSQK- 151 (369)
Q Consensus 91 ~~kPDvVi~tGGy~s-~P~~iaA~~l~iP~vi--hEqN~v----~--G-----~~n----k~l~~~a~~v~~~~~~~~~- 151 (369)
..++|+|-+.. |.+ ....++++..++|++. |....+ . + ... +.+...++.+.+......+
T Consensus 99 ~~~~DvIH~h~-~~~~~~~~~~~~~~~iP~V~t~H~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 177 (405)
T TIGR03449 99 PGYYDLIHSHY-WLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARD 177 (405)
T ss_pred CCCCCEEEECC-CCHHHHHHHHHHHCCCCEEEEECCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 89976899887-10789999999864999899814414313124432666441999999999997489999957899999
Q ss_pred -----CCCCCCCEEEECCCCHHHHHHH--HHHHHHHCCC-CCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHC-CCCCEE
Q ss_conf -----3556673253044432456543--3344331144-78148986304322-210233344544323202-466067
Q gi|254781097|r 152 -----KVLLRKIIVTGNPIRSSLIKMK--DIPYQSSDLD-QPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQ-RKRLVI 221 (369)
Q Consensus 152 -----~~~~~k~~~~G~PvR~~~~~~~--~~~~~~~~~~-~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~-~~~~~v 221 (369)
..+.+|+.++.|-|..+.+... .....+.+.+ +.+.|+.. |.+.. +.+. .+.+++..+.+.. ..++.+
T Consensus 178 l~~~~~~~~~ki~vi~nGvd~~~f~p~~~~~~r~~~g~~~~~~~il~v-GRl~~~Kg~~-~li~A~~~l~~~~p~~~l~~ 255 (405)
T TIGR03449 178 LVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVVAFV-GRIQPLKAPD-VLLRAVAELLDRDPDRNLRV 255 (405)
T ss_pred HHHHHCCCHHHEEEECCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEE-CCCCHHHHHH-HHHHHHHHHHHHCCCCCEEE
T ss_conf 999849886788997799770306888858999971989898189995-5885011489-99999999998689987899
Q ss_pred EEEECCC-----CHHHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECC
Q ss_conf 7620255-----167765322100--1111345444--45144430044899725---4-20233345529604875335
Q gi|254781097|r 222 MQQVRED-----DKEKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYP 288 (369)
Q Consensus 222 ~~~~g~~-----~~~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p 288 (369)
+..+|.. ..+.+.+...+. ..++.+.++. ++++++|+.||+++.-+ | +.++.|++++|+|.|.-..+
T Consensus 256 ~v~Gg~~g~~~~~~~~l~~~~~~lgl~~~V~f~G~~~~~~~~~~~~~adv~v~PS~~E~fg~~~lEAma~G~PVVas~~g 335 (405)
T TIGR03449 256 IVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 99838887536569999999998288875986799889999999995787635566678884799999869999991799
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 524898999899999889889980001998999999999861899999999999852783279999999999998
Q gi|254781097|r 289 HSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 289 ~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~ 363 (369)
+ ..+.+++...|++++.. +++.|++++..+++||+.+++|++++++.....+-+.+++.++++=+
T Consensus 336 ----g----~~e~v~~g~~G~lv~~~--d~~~la~ai~~ll~d~~~~~~l~~~~~~~~~~fsw~~~a~~~~~vY~ 400 (405)
T TIGR03449 336 ----G----LPVAVADGETGLLVDGH--DPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYR 400 (405)
T ss_pred ----C----CCEEEECCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf ----8----61125379738997989--99999999999975999999999999999996999999999999999
No 40
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.75 E-value=1.3e-15 Score=128.65 Aligned_cols=324 Identities=15% Similarity=0.135 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 885256207999999999659839999572376762444--687516875256565331233211100012110135554
Q gi|254781097|r 12 GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF--PADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLI 89 (369)
Q Consensus 12 gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii 89 (369)
||..=| ...++++|.++||+|.++|.........+. .+.+.|.++.........+. .++..+...++++
T Consensus 14 GG~e~~---v~~La~~L~~~Gh~V~Vit~~~~~~~~~~~~~~g~~V~~~p~~~~~~~~~~~------~~~~~~~~~r~~~ 84 (398)
T cd03796 14 GGVETH---IYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLP------TFFGTFPLLRNIL 84 (398)
T ss_pred CCHHHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCHHH------HHHHHHHHHHHHH
T ss_conf 977999---9999999997699899996899988774685388469975663345631167------7988899999999
Q ss_pred HHCCCCEEEECCCCCC--HHHHHHHHHCCCCCEE--ECC----CCCCHHHHHHH---HHHHHHH-HCCCCC---C--CCC
Q ss_conf 2034442431265321--0247888623411012--215----32001567788---9999987-413432---2--223
Q gi|254781097|r 90 KKLKPNVVVGFGGYHS--ISPLLAGMILRIPSMV--HEQ----NVIMGKANRLL---SWGVQII-ARGLVS---S--QKK 152 (369)
Q Consensus 90 ~~~kPDvVi~tGGy~s--~P~~iaA~~l~iP~vi--hEq----N~v~G~~nk~l---~~~a~~v-~~~~~~---~--~~~ 152 (369)
.+.+||+|-+-+.+.. ....+.|+.+++|++. |-. +...-..|+++ .+.++.+ ++|... . ...
T Consensus 85 ~~~~~DIIH~H~~~~~l~~~~~~~ar~~g~~~V~T~H~~~~~~~~~~~~~~~~~~~~l~~~d~vIavS~~~~e~~~~~~~ 164 (398)
T cd03796 85 IRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRAS 164 (398)
T ss_pred HHCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHC
T ss_conf 76799889989626889999999987559978998344324463149999999999998579999997799999999848
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 556673253044432456543334433114478148986304322-2102333445443232024660677620255167
Q gi|254781097|r 153 VLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKE 231 (369)
Q Consensus 153 ~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~ 231 (369)
.+.+++.++.|.|..+.+..... ...++...|+.. |-+-. +.+ +.+.+++..+.+. .+++.++..+.....+
T Consensus 165 ~~~~ki~vIpNGVd~~~f~p~~~----~~~~~~~~il~v-GRL~~~KG~-d~Li~A~~~l~~~-~p~~~lvIvGdGp~~~ 237 (398)
T cd03796 165 LDPERVSVIPNAVDSSDFTPDPS----KRDNDKITIVVI-SRLVYRKGI-DLLVGIIPEICKK-HPNVRFIIGGDGPKRI 237 (398)
T ss_pred CCCCCEEEECCCCCHHHCCCCCC----CCCCCCEEEEEE-CCCCCHHHH-HHHHHHHHHHHHH-CCCEEEEEECCCCCHH
T ss_conf 99410999889574764488722----158898699997-067503009-9999999999965-8995999937871189
Q ss_pred HHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 765322100--1111345444--45144430044899725---4-20233345529604875335524898999899999
Q gi|254781097|r 232 KVQKQYDEL--GCKATLACFF--KDIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQ 303 (369)
Q Consensus 232 ~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~ 303 (369)
.+++...+. ..++.+.+++ +++.++|+.||++|.-| | +.++.|++++|+|.|.-- .++ ..+.+
T Consensus 238 ~L~~l~~~~~l~~~V~flG~v~~~~l~~~~~~aDvfv~PS~~Egfglv~lEAmA~G~PVVat~----vgG----~~Evv- 308 (398)
T cd03796 238 LLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTR----VGG----IPEVL- 308 (398)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCCEEECC----CCC----CCCEE-
T ss_conf 999999872336728975888567778888774421276542466679999998399899888----998----61134-
Q ss_pred HCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHH
Q ss_conf 8898899800019989999999998618999999999998527832-79999999999998
Q gi|254781097|r 304 EGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQ-AVLMLSDLVEKLAH 363 (369)
Q Consensus 304 ~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~-aa~~i~~~i~~la~ 363 (369)
+.|.. .+... +++.|+++|..++.||+++++|++++++..... .-++|++.++++=+
T Consensus 309 ~~~~~-~~~~~--d~~~la~~l~~ll~~~~~~~~~~~~~r~~v~~~fsw~~ia~~~~~vY~ 366 (398)
T cd03796 309 PPDMI-LLAEP--DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYD 366 (398)
T ss_pred ECCCE-EECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 18936-87489--999999999999769999999999999999996999999999999999
No 41
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=8e-16 Score=130.16 Aligned_cols=345 Identities=15% Similarity=0.122 Sum_probs=208.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 76999878852562079999999996598399995723767624446875168752565653312332111000121101
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
++|.+++|-..|-+. +--|.++|+++-+++.|++-++-....+.. ...|. ...+.--+....+..++++++...+
T Consensus 2 ~ki~i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG~~m~aeG~--~sl~~--~~elsvmGf~EVL~~lp~llk~~~~ 76 (381)
T COG0763 2 LKIALSAGEASGDLL-GAGLIKALKARYPDVEFVGVGGEKMEAEGL--ESLFD--MEELSVMGFVEVLGRLPRLLKIRRE 76 (381)
T ss_pred CEEEEEECCCCHHHH-HHHHHHHHHHHCCCEEEEEECCHHHHHCCC--CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 459999044431146-899999998638983899817678886557--65558--8998782299999988999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHH--CC--CCCEEECCCCC----CHHHHHHHHHHHHHHHCCCCCCCCCC--C
Q ss_conf 355542034442431265321024788862--34--11012215320----01567788999998741343222235--5
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMI--LR--IPSMVHEQNVI----MGKANRLLSWGVQIIARGLVSSQKKV--L 154 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~--l~--iP~vihEqN~v----~G~~nk~l~~~a~~v~~~~~~~~~~~--~ 154 (369)
..+.+...+||++|+.- |..|-..++-++ .+ +|++.+=.-+| ++++. -+.+++|.+++-+|...+.+ .
T Consensus 77 ~~~~i~~~kpD~~i~ID-sPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~-~i~~~~D~lLailPFE~~~y~k~ 154 (381)
T COG0763 77 LVRYILANKPDVLILID-SPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAV-KIAKYVDHLLAILPFEPAFYDKF 154 (381)
T ss_pred HHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECHHHHH-HHHHHHHHEEEECCCCHHHHHHC
T ss_conf 99999855998899967-89886499999997089998699978530565521689-99997617214367788999855
Q ss_pred CCCCEEEECCCCHHHH--HHHHHHHHHHCC-CCCCEEEEEECCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6673253044432456--543334433114-47814898630432221--023334454432320246606776202551
Q gi|254781097|r 155 LRKIIVTGNPIRSSLI--KMKDIPYQSSDL-DQPFHLLVFGGSQGAKV--FSDIVPKSIALIPEMQRKRLVIMQQVREDD 229 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~--~~~~~~~~~~~~-~~~~~ILv~GGS~Ga~~--ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~ 229 (369)
.-.+.|+|+|+-++.. ..+.......+. .+...++++-||-++.. +-..+.+++..+.+ ..+.+.++.-+-...
T Consensus 155 g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~-~~~~~~~vlp~~~~~ 233 (381)
T COG0763 155 GLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA-RYPDLKFVLPLVNAK 233 (381)
T ss_pred CCCEEEECCHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCHH
T ss_conf 9970896780564234434578999982899778769981688588999877899999999986-589965999568478
Q ss_pred HHHHHHHHHHCC---CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 677653221001---11134544445144430044899725420233345529604875335524898999899999889
Q gi|254781097|r 230 KEKVQKQYDELG---CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGG 306 (369)
Q Consensus 230 ~~~~~~~~~~~~---~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G 306 (369)
.+.+........ .+..+.+ .+-.+.|.+||+++..||..|+ |++.+|+|||.. |. ++-=-+.-|+++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aSGT~tL-E~aL~g~P~Vv~-Yk--~~~it~~iak~lvk~~ 307 (381)
T COG0763 234 YRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAASGTATL-EAALAGTPMVVA-YK--VKPITYFIAKRLVKLP 307 (381)
T ss_pred HHHHHHHHHHCCCCCCEEEEEC--CHHHHHHHHHHHHHHHCCHHHH-HHHHHCCCEEEE-EE--CCHHHHHHHHHHCCCC
T ss_conf 8999999862334576078407--4578999984189984467999-999829997999-94--4588999999861677
Q ss_pred CEE---------EE---EHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHH
Q ss_conf 889---------98---0001998999999999861899999999999852---7832-79999999999998
Q gi|254781097|r 307 GAK---------VI---TENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK---GKPQ-AVLMLSDLVEKLAH 363 (369)
Q Consensus 307 ~a~---------~i---~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~---~~~~-aa~~i~~~i~~la~ 363 (369)
+.- ++ -|++.+++.|++++..++.|+..++++.+..+.+ -..+ +.++.++.+.++++
T Consensus 308 yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 308 YVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred CCCCHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 2443688618730467775316999999999998348676999999999999997589688999999998741
No 42
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.74 E-value=1.8e-15 Score=127.74 Aligned_cols=331 Identities=17% Similarity=0.138 Sum_probs=175.5
Q ss_pred EEEEECC-----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEEC--CCCCCCCHH-HHHHHHHH
Q ss_conf 6999878-----852562079999999996598399995723767624446875168752--565653312-33211100
Q gi|254781097|r 6 VILLVAG-----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVS--SQVRFSNPF-VFWNSLVI 77 (369)
Q Consensus 6 ~ili~~g-----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~l~~ 77 (369)
||++.+. .-||=-.-+..++++|.++||+|.+++........... ......... ......... ..+.....
T Consensus 1 rIl~vt~~~pP~~~GG~e~~~~~la~~L~~~Gh~V~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE-VIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999486489997649999999999999779989999557987664213-57617970476420035431015677642
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCCEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCC----
Q ss_conf 0-1211013555420344424312653-210247888623411012--2153200156778899999874134322----
Q gi|254781097|r 78 L-WKAFIASLRLIKKLKPNVVVGFGGY-HSISPLLAGMILRIPSMV--HEQNVIMGKANRLLSWGVQIIARGLVSS---- 149 (369)
Q Consensus 78 ~-~~~~~~~~~ii~~~kPDvVi~tGGy-~s~P~~iaA~~l~iP~vi--hEqN~v~G~~nk~l~~~a~~v~~~~~~~---- 149 (369)
. ........+++++++||+|.....+ .+.....+++..++|++. |+.-.+-.+. .++.+.++.+.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~pDivh~h~~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~-~~~~~~~d~vi~~S~~~~~~~ 158 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQ-GLFKKGGDAVIAPSRFLLDRY 158 (359)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHH-HHHHCCCCEEEECCHHHHHHH
T ss_conf 2789999999999874999999888317679999999984998999972221106177-887458999999999999999
Q ss_pred -CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -223556673253044432456543334433114478148986304322-210233344544323202466067762025
Q gi|254781097|r 150 -QKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 150 -~~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
....+..++.++.|+|..+..... .....+++..|+.+ |.+.. +.+. .+.+++..+.. .++.++..++.
T Consensus 159 ~~~~~~~~~i~vI~ngvd~~~~~~~----~~~~~~~~~~i~~v-GRl~~~Kg~~-~li~a~~~l~~---~~~~l~i~G~g 229 (359)
T cd03823 159 VANGLFAEKISVIRNGIDLDRAKRP----RRAPPGGRLRFGFI-GQLTPHKGVD-LLLEAFKRLPR---GDIELVIVGNG 229 (359)
T ss_pred HHHCCCCCCEEEECCCCCHHHCCCC----CCCCCCCCEEEEEE-CCCCCCCCHH-HHHHHHHHCCC---CCCEEEEECCC
T ss_conf 9808993238998898684542743----33456787499995-8897625999-99999985555---78289997786
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHCCCEEEE--C---CCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 51677653221001111345444--451444300448997--2---5420233345529604875335524898999899
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFF--KDIERYIVEANLLIC--R---SGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~--~~m~~~~~~aDlvIs--r---aG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~ 300 (369)
.+.+.... ......++.+.+++ +++.++|+.||+++. + +-+.++.|++++|+|.|.-.. ++ ..+
T Consensus 230 ~~~~~~~~-~~~~~~~v~f~G~~~~~~~~~~~~~adi~v~pS~~~E~fg~~~lEAma~G~PvIas~~----gg----~~e 300 (359)
T cd03823 230 LELEEESY-ELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDI----GG----MAE 300 (359)
T ss_pred CHHHHHHH-HHHCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCC----CC----CHH
T ss_conf 05689999-9725776488065678999999986573656775657774799999982998998889----98----175
Q ss_pred HHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9998898899800019989999999998618999999999998527832799999999999
Q gi|254781097|r 301 YLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 301 ~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
.+++...|++++.. +++.|+++|..+++||+++++|++++++.. ..+++++..+++
T Consensus 301 ~i~~g~~G~lv~~~--d~~~la~ai~~ll~d~~~~~~~~~~~~~~~---s~~~~a~~~~~~ 356 (359)
T cd03823 301 LVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLERLRAGIEPPR---SIEDQAEEYLKL 356 (359)
T ss_pred HHCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_conf 60379867998999--999999999999849999999999999747---999999999998
No 43
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.73 E-value=6.7e-15 Score=123.69 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=160.6
Q ss_pred EEEEECC----CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878----852562079999999996598399995723767624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG----GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g----GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
||++.+- ..||=-.-+..++++|.++||+|.+++........... .....+...+... ........ +
T Consensus 1 kIL~i~~~f~P~~GG~e~~~~~L~~~L~~~Gh~V~v~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~----- 71 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEE--RNGHRVIRAPSLL-NVASTPFS-P----- 71 (357)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCCEEEECCCCC-CCCCCHHH-H-----
T ss_conf 9999938289989829999999999999779989999827988776502--5884799877433-33442046-9-----
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE--ECCCCCCHHHHH-------HHHHHHHHHHCCCCCCCC-
Q ss_conf 1013555420344424312653210247888623411012--215320015677-------889999987413432222-
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV--HEQNVIMGKANR-------LLSWGVQIIARGLVSSQK- 151 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi--hEqN~v~G~~nk-------~l~~~a~~v~~~~~~~~~- 151 (369)
.......++..+||+|..-..+............++|++. |..+.......+ ++.+.++.+.+..+...+
T Consensus 72 ~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 151 (357)
T cd03795 72 SFFKQLKKLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAET 151 (357)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHH
T ss_conf 99999999725999999947635999999998579979999878853205679999999999998489999889999999
Q ss_pred ----CCCCCCCEEEECCCCHHHHHHHHHH-H-HHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf ----3556673253044432456543334-4-33114478148986304322-210233344544323202466067762
Q gi|254781097|r 152 ----KVLLRKIIVTGNPIRSSLIKMKDIP-Y-QSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQ 224 (369)
Q Consensus 152 ----~~~~~k~~~~G~PvR~~~~~~~~~~-~-~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~ 224 (369)
....+|+.++.|.+..+.+...+.. . .....++++.|+ +-|.+.- +.+. .+.++++.++ + +.++..
T Consensus 152 ~~~~~~~~~k~~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~i~-~vGrl~~~Kg~~-~li~a~~~l~---~--~~l~i~ 224 (357)
T cd03795 152 SPVLRRFRDKVRVIPLGLDPARYPRPDALEEAIWRRAAGRPFFL-FVGRLVYYKGLD-VLLEAAAALP---D--APLVIV 224 (357)
T ss_pred HHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE-EEECCCHHCCCH-HHHHHHHHCC---C--EEEEEE
T ss_conf 99844776768998897662336887367888740358997899-980780430957-8998987698---9--099999
Q ss_pred ECCCCHHHHHHHHHHC--CCCCCCCCCC--CCCHHHHHCCCEEE--EC---CC-CHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 0255167765322100--1111345444--45144430044899--72---54-20233345529604875335524898
Q gi|254781097|r 225 VREDDKEKVQKQYDEL--GCKATLACFF--KDIERYIVEANLLI--CR---SG-ALTVSEIAVIGRPAILVPYPHSVDQD 294 (369)
Q Consensus 225 ~g~~~~~~~~~~~~~~--~~~~~v~~f~--~~m~~~~~~aDlvI--sr---aG-~~Ti~E~~~~g~P~IlIP~p~a~~~h 294 (369)
+.....+.+++...+. ..++.+.+++ +++.++|++||++| |. -| +.++.|++++|+|.|.-..+.+
T Consensus 225 G~G~~~~~l~~~~~~~~~~~~V~f~G~~~~~~~~~~~~~adi~v~pS~~~~Egfg~~~lEAma~G~PVVat~~gg~---- 300 (357)
T cd03795 225 GEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG---- 300 (357)
T ss_pred ECCCCCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHCCCCCHHHHHHHHCCCCEEEECCCCC----
T ss_conf 5675422210005551875147525865145579886268789994640213566679999987998999359998----
Q ss_pred HHHHHHHH-HHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99989999-988988998000199899999999986189999999999985278
Q gi|254781097|r 295 QLHNAYYL-QEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK 347 (369)
Q Consensus 295 Q~~NA~~l-~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~ 347 (369)
.+.+ .+...|++++.. +++.|+++|..+++||+.+++|++++++...
T Consensus 301 ----~~~i~~~~~~G~l~~~~--d~~~l~~~i~~ll~~~~~~~~m~~~ar~~~~ 348 (357)
T cd03795 301 ----GSYVNLHGVTGLVVPPG--DPAALAEAIRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred ----HHHHEECCCEEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ----15605569579997899--9999999999997799999999999999999
No 44
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.70 E-value=3.8e-14 Score=118.41 Aligned_cols=336 Identities=14% Similarity=0.082 Sum_probs=168.1
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCC
Q ss_conf 6999878--85256207999999999659839999572376762444687516875256-56533123321110001211
Q gi|254781097|r 6 VILLVAG--GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQ-VRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~~g--GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 82 (369)
||++.-- |.||--.-...+|++|.++||+|.++|.....+...+........+.... ....+.+.....++..++.+
T Consensus 2 kI~fi~p~l~~GGaEr~v~~la~~L~~~Gh~V~v~t~~~d~~~~~~~~~~~~~~v~~~~~~~p~~~~~~~~~~~~~lr~~ 81 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRML 81 (392)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCHHCCHHHHHHHHHHHH
T ss_conf 89998699999869999999999999769939999726883324055517854899926746701212378999999999
Q ss_pred HHH--HHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCC--EEECCCCCC----HHHHHHH-----------HHHHHHHH
Q ss_conf 013--5554203444243126532102478886234110--122153200----1567788-----------99999874
Q gi|254781097|r 83 IAS--LRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPS--MVHEQNVIM----GKANRLL-----------SWGVQIIA 143 (369)
Q Consensus 83 ~~~--~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~--vihEqN~v~----G~~nk~l-----------~~~a~~v~ 143 (369)
..+ ...+...+||+++...-....|. .....+.|+ ++|-++... +...|+. .+++|.+.
T Consensus 82 ~~~~~~~~~~~~~~Dvi~~~~~~~~~~~--~~~~~~~~ii~~~H~p~~~l~~~~~~~~~~y~~~~~~le~~~~~~~d~ii 159 (392)
T cd03805 82 YLALYLLLLPDEKYDVFIVDQVSACVPL--LKLFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIV 159 (392)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHH--HHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999998633479809998885347999--99746996799960784021026668999999999999999885088999
Q ss_pred CCCC-------CCCCCCCCCCCEEEECCCCHHHHHHHHHH---HHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHH
Q ss_conf 1343-------22223556673253044432456543334---43311447814898630432-2210233344544323
Q gi|254781097|r 144 RGLV-------SSQKKVLLRKIIVTGNPIRSSLIKMKDIP---YQSSDLDQPFHLLVFGGSQG-AKVFSDIVPKSIALIP 212 (369)
Q Consensus 144 ~~~~-------~~~~~~~~~k~~~~G~PvR~~~~~~~~~~---~~~~~~~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~ 212 (369)
+... +..+.....+..++-|||..+.+...... ......++...+|.+ |-+- -+.+ +.+.+++..+.
T Consensus 160 ~~S~~~~~~~~~~~~~~~~~~~~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~il~v-gRl~~~Kg~-~~lI~A~~~l~ 237 (392)
T cd03805 160 VNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSI-NRFERKKNI-ALAIEAFAILK 237 (392)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEE-ECCCCCCCH-HHHHHHHHHHH
T ss_conf 9567899999998302065885797798477764876410445553246787399998-444534668-99999999999
Q ss_pred HHCC--CCCEEEEEECCC--------CHHHHHHHHH---HCCCCCCCCCCCCCC--HHHHHCCCEEEECC---C-CHHHH
Q ss_conf 2024--660677620255--------1677653221---001111345444451--44430044899725---4-20233
Q gi|254781097|r 213 EMQR--KRLVIMQQVRED--------DKEKVQKQYD---ELGCKATLACFFKDI--ERYIVEANLLICRS---G-ALTVS 273 (369)
Q Consensus 213 ~~~~--~~~~v~~~~g~~--------~~~~~~~~~~---~~~~~~~v~~f~~~m--~~~~~~aDlvIsra---G-~~Ti~ 273 (369)
+... ..+.++..+|.. ...++++... ....++.+.++++|. .++|+.||+++.-+ | +.++.
T Consensus 238 ~~~~~~~~~~Lvi~Gg~~~r~~e~~~y~~eL~~l~~~~~~l~~~V~Flg~~~~~~~~~l~~~ad~~v~~s~~Egfg~v~l 317 (392)
T cd03805 238 DKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPL 317 (392)
T ss_pred HHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHH
T ss_conf 85676688599998187555510189999999999982598785999888996999999985979998874346660799
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 34552960487533552489899989999988988998000199899999999986189999999999985278-32799
Q gi|254781097|r 274 EIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK-PQAVL 352 (369)
Q Consensus 274 E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~-~~aa~ 352 (369)
|++++|+|.|...- ++ ..+.+.+...|++++. +++.|++++..+++||+.+++|++++++... ..+-+
T Consensus 318 EAma~G~PVVasd~----gG----~~E~I~~g~~G~Lv~~---d~~~la~~i~~ll~d~~lr~~mg~~ar~~v~~~Fs~e 386 (392)
T cd03805 318 EAMYAGKPVIACNS----GG----PLETVVDGETGFLCEP---TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHCCCCEEEECC----CC----CHHHEECCCEEEEECC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99977999999489----98----6766457966999595---9999999999997899999999999999999866999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781097|r 353 MLSD 356 (369)
Q Consensus 353 ~i~~ 356 (369)
.+++
T Consensus 387 ~~a~ 390 (392)
T cd03805 387 AFAE 390 (392)
T ss_pred HHHH
T ss_conf 9984
No 45
>pfam08660 Alg14 Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.
Probab=99.66 E-value=1.8e-16 Score=134.61 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=113.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCE-EEEEECHH--HHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 998788525620799999999965983-99995723--767624446875168752565653312332111000121101
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYA-VYLITDRR--ARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~-v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
++++ |+|||+.++++|.+++.+++.. .++++..+ ....+.+.. ...+.+...+..+.-....+.+++..++++.+
T Consensus 2 ~vv~-GSGGHt~eml~L~~~l~~~~~~~~yvv~~~D~~s~~~~~~~~-~~~~~i~~~~r~R~v~qs~~~s~~~~~~~~~~ 79 (166)
T pfam08660 2 CVVL-GSGGHTAEMLRLLPFLKNLEDPRRYVVTETDKDSLSKASKFE-KSRGGILKIPRAREVGQSYLRSIFTTLRNLLS 79 (166)
T ss_pred EEEE-ECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC-CCCCEEEECCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999-482789999999998775689738999889807899988605-55523764463157385567459999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC------CCCEEECC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 35554203444243126532102478886234------11012215---3200156778899999874134322223556
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILR------IPSMVHEQ---NVIMGKANRLLSWGVQIIARGLVSSQKKVLL 155 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~------iP~vihEq---N~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~ 155 (369)
+.+++.++|||+||+||+++|+|++++|++++ .+++-.|+ -..+++++|++.+++|.+++.+++..+..|
T Consensus 80 s~~il~k~kPdvii~tG~g~~vp~~~~a~ll~~~~~~~~k~i~iES~~r~~~~sltgkll~~~ad~f~vqW~~l~~~yp- 158 (166)
T pfam08660 80 ALKLLRRERPDVILCNGPGTCVPFCLAAKLLKILGLKGTKIVYIESFARVKTLSLSGKLLYPLADRFIVQWPELKKKYP- 158 (166)
T ss_pred HHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEEECHHHHHHCC-
T ss_conf 9999985399899977996030999999999864015885899984421378647777699868988983799994689-
Q ss_pred CCCEEEEC
Q ss_conf 67325304
Q gi|254781097|r 156 RKIIVTGN 163 (369)
Q Consensus 156 ~k~~~~G~ 163 (369)
|..+.|.
T Consensus 159 -~a~y~G~ 165 (166)
T pfam08660 159 -KAIYYGR 165 (166)
T ss_pred -CCEEEEC
T ss_conf -9779703
No 46
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.64 E-value=7e-14 Score=116.57 Aligned_cols=336 Identities=17% Similarity=0.188 Sum_probs=182.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEE----ECHHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf 9987885256207999999999659839999----57237676244468-75168752565653312332111000-121
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI----TDRRARSFITDFPA-DSIYEIVSSQVRFSNPFVFWNSLVIL-WKA 81 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 81 (369)
+||-|. |-=.-|..|+++|+++.++..+. ++.+....-...+. ....++++.++...+....+..+..- ..-
T Consensus 2 ~lSNGh--GEDl~a~~i~~~L~~~~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~ 79 (396)
T TIGR03492 2 FLSNGH--GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCCCCC--HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 406763--588999999999996299996698513478499997899487466435774622436778999997036999
Q ss_pred CHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEC---CCCC----CHHH--H--------------HHHH
Q ss_conf 101355542--034442431265321024788862341101221---5320----0156--7--------------7889
Q gi|254781097|r 82 FIASLRLIK--KLKPNVVVGFGGYHSISPLLAGMILRIPSMVHE---QNVI----MGKA--N--------------RLLS 136 (369)
Q Consensus 82 ~~~~~~ii~--~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihE---qN~v----~G~~--n--------------k~l~ 136 (369)
.++-.+.++ ..+.|+|+.+|.+ +|. +.|+..+.|++..- +.-+ +|+. . +|+.
T Consensus 80 ~~~q~~~~~~~~~~~~~ilavGD~--~pl-~~A~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pwe~~lm 156 (396)
T TIGR03492 80 TLGQWRALRKWAKKGDLIVAVGDI--VPL-LFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLM 156 (396)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCH--HHH-HHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHHHHHHH
T ss_conf 999999999854458879996671--888-99998189816997045323660687753012332155178167799974
Q ss_pred --HHHHHHHCCCCCCCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH--HHHHHHHHH
Q ss_conf --999987413432222355--66732530444324565433344331144781489863043222102--333445443
Q gi|254781097|r 137 --WGVQIIARGLVSSQKKVL--LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS--DIVPKSIAL 210 (369)
Q Consensus 137 --~~a~~v~~~~~~~~~~~~--~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln--~~v~~~~~~ 210 (369)
+.|..||.-=..+.+.+. .-++.++|||.=+.+... ......++..+|+++-||--....+ ..+.+++..
T Consensus 157 ~~~rc~~Vf~RD~lTA~~L~~~gi~a~f~GnPmMD~l~~~----~~~~~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~ 232 (396)
T TIGR03492 157 RSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPP----ERKPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEA 232 (396)
T ss_pred CCCCCCEEECCCHHHHHHHHHCCCCEEEECCCHHCCCCCC----CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 0966529950558879999977996496087341378888----876678878679995898859999879999999996
Q ss_pred HHHHCCCCCEEEE-EECCCCHHHHHHHHHHCC----------------CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHH
Q ss_conf 2320246606776-202551677653221001----------------11134544445144430044899725420233
Q gi|254781097|r 211 IPEMQRKRLVIMQ-QVREDDKEKVQKQYDELG----------------CKATLACFFKDIERYIVEANLLICRSGALTVS 273 (369)
Q Consensus 211 l~~~~~~~~~v~~-~~g~~~~~~~~~~~~~~~----------------~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~ 273 (369)
+.+.. .+.+.. ....-+.+.+.......+ .+..|.-..+.+.+++.+||++|+-||..|.
T Consensus 233 l~~~~--~~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~ia~AGTAte- 309 (396)
T TIGR03492 233 LPDSQ--PFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTATE- 309 (396)
T ss_pred HCCCC--CEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHHHCCCCHHH-
T ss_conf 34148--869999868999989999999965970057865420001048768999738489999855114443770999-
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHH--HHHHHHH-CCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH-HHCCCCH
Q ss_conf 345529604875335524898999--8999998-89889980001998999999999861899999999999-8527832
Q gi|254781097|r 274 EIAVIGRPAILVPYPHSVDQDQLH--NAYYLQE-GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQV-SMKGKPQ 349 (369)
Q Consensus 274 E~~~~g~P~IlIP~p~a~~~hQ~~--NA~~l~~-~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~-~~~~~~~ 349 (369)
|+.-+|+|+|.+|.. +-|+- -|+.-.+ .|.++.+. +-+++.+++.+..++.|++++++|.++. +.++.|.
T Consensus 310 Q~vgLG~Pvv~l~g~----GPQfT~~fA~~Q~RLLG~sv~~~--~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~RlG~~G 383 (396)
T TIGR03492 310 QAVGLGKPVIQLPGK----GPQFTYGFAEAQSRLLGGSVFLA--SKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPG 383 (396)
T ss_pred HHHHCCCCEEEECCC----CCHHHHHHHHHHHHHCCCEEEEC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 998718987997278----72777999999998627533526--899999999999985499999999999998558865
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999999
Q gi|254781097|r 350 AVLMLSDLVEKL 361 (369)
Q Consensus 350 aa~~i~~~i~~l 361 (369)
|+++||+.|++.
T Consensus 384 as~RiA~~il~~ 395 (396)
T TIGR03492 384 ASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHHHH
T ss_conf 889999999951
No 47
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.63 E-value=6.3e-14 Score=116.88 Aligned_cols=260 Identities=13% Similarity=0.110 Sum_probs=153.5
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE--ECCCCCCH----H--HHH-------HHHHHHHHHHCCC
Q ss_conf 1013555420344424312653210247888623411012--21532001----5--677-------8899999874134
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV--HEQNVIMG----K--ANR-------LLSWGVQIIARGL 146 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi--hEqN~v~G----~--~nk-------~l~~~a~~v~~~~ 146 (369)
.....+++++++||+|-.--|+....+..+|+.++||+++ |-.++... . ..+ .+.+.++.+.+..
T Consensus 71 ~~~l~r~lr~~~pDlIHaH~~~~g~~~~~~a~~~~iP~V~T~Hg~d~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iI~vS 150 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVS 150 (367)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 48999999976999999768606899999999969999999813641014101001104678999999997269999699
Q ss_pred CCCC-----CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 3222-----23556673253044432456543334433114478148986304322-21023334454432320246606
Q gi|254781097|r 147 VSSQ-----KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLV 220 (369)
Q Consensus 147 ~~~~-----~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~ 220 (369)
.... .+.+.+|+.++.+-|..+.+..... ...+..+|..| .+.. +.+. .+.+++..+.+. .+++.
T Consensus 151 ~~~~~~l~~~G~~~~ki~vi~~GvD~~~f~~~~~------~~~~~~il~vG-Rl~~~KG~~-~li~A~~~l~~~-~p~~~ 221 (367)
T cd05844 151 QFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP------ARRPPRILFVG-RFVEKKGPL-LLLEAFARLARR-VPEVR 221 (367)
T ss_pred HHHHHHHHHCCCCHHHEEEECCCCCHHHCCCCCC------CCCCCEEEEEE-CCCCCCCHH-HHHHHHHHHHHH-CCCEE
T ss_conf 9999999985989789999778636764699987------77896899993-573000769-999999997966-86979
Q ss_pred EEEEECCCCHHHHHHHHHHCC--CCCCCCCCC--CCCHHHHHCCCEEEECC---------C-CHHHHHHHHHCCCEEEEE
Q ss_conf 776202551677653221001--111345444--45144430044899725---------4-202333455296048753
Q gi|254781097|r 221 IMQQVREDDKEKVQKQYDELG--CKATLACFF--KDIERYIVEANLLICRS---------G-ALTVSEIAVIGRPAILVP 286 (369)
Q Consensus 221 v~~~~g~~~~~~~~~~~~~~~--~~~~v~~f~--~~m~~~~~~aDlvIsra---------G-~~Ti~E~~~~g~P~IlIP 286 (369)
++..+.......+++...+.+ .++.+.++. +++.++|+.||+.+.-+ | +.++.|++++|+|.|...
T Consensus 222 l~ivG~Gp~~~~l~~~~~~l~l~~~V~f~G~~~~~~v~~~l~~adv~v~PS~~~~~g~~Eg~~~~~lEAmA~G~PVVat~ 301 (367)
T cd05844 222 LVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATR 301 (367)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf 99998883789999999970987637877889818899999857879960020377885676379999998499789927
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Q ss_conf 35524898999899999889889980001998999999999861899999999999852783-279999999999
Q gi|254781097|r 287 YPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP-QAVLMLSDLVEK 360 (369)
Q Consensus 287 ~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~-~aa~~i~~~i~~ 360 (369)
.+ ...+.+.+...|+++++.| ++.|++++..+++||+.+++|++++++.... ...++.++.+|+
T Consensus 302 ~g--------gi~e~V~~g~~G~lv~~~d--~~~La~ai~~Ll~d~~~~~~m~~~gr~~v~~~f~~~~~~~~Le~ 366 (367)
T cd05844 302 HG--------GIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CC--------CCHHHHCCCCCEEEECCCC--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99--------8687720799689978999--99999999999849999999999999999981999999999833
No 48
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.62 E-value=3.5e-12 Score=104.66 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=121.4
Q ss_pred CCCCCEEEECCCCHHHHHHHH--HHHHHHCCCCCCEEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 566732530444324565433--34433114478148986304322----210233344544323202466067762025
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKD--IPYQSSDLDQPFHLLVFGGSQGA----KVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~--~~~~~~~~~~~~~ILv~GGS~Ga----~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
+..|+.++-|+|..+.+...+ ..++..+.+....++.+|+ .|. +.+ +.+.+++..+.......+.++.. |.
T Consensus 157 ~~~ki~vI~Ngid~~~f~p~~~~~~r~~~~~~~~~~vi~~~~-~~~~~~~Kg~-~~li~A~~~l~~~~~~~~~lvi~-G~ 233 (365)
T cd03825 157 KGIPIEVIPNGIDTTIFRPRDKREARKRLGLPADKKIILFGA-VGGTDPRKGF-DELIEALKRLAERWKDDIELVVF-GA 233 (365)
T ss_pred CCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCEEEEEE-ECCCCCCCCH-HHHHHHHHHHHHCCCCCEEEEEE-CC
T ss_conf 989789989973646449868899999839798885899953-0015643247-99999999876506898899993-79
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCC---CHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 5167765322100111134544445---144430044899725----420233345529604875335524898999899
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFFKD---IERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~~~---m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~ 300 (369)
.... .. .....++.+.+|++| +.++|++||+++.-| =+.++.|++++|+|.|.-. .++ ..+
T Consensus 234 ~~~~-~~---~~l~~~v~flG~~~~~~~l~~~~~~aDi~v~pS~~Egfg~v~lEAma~G~PVVasd----~gg----~~e 301 (365)
T cd03825 234 SDPE-IP---PDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFD----VGG----IPD 301 (365)
T ss_pred CCHH-HH---HHCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEECC----CCC----HHH
T ss_conf 8588-89---66899799926879989999999727299516776888599999997199899738----998----599
Q ss_pred HHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Q ss_conf 99988988998000199899999999986189999999999985278-327999999999999
Q gi|254781097|r 301 YLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGK-PQAVLMLSDLVEKLA 362 (369)
Q Consensus 301 ~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~-~~aa~~i~~~i~~la 362 (369)
.+.+...|++++..| ++.|+++|..+++||+.+++|++++++... ....+++++..+++=
T Consensus 302 iv~~~~~G~lv~~~d--~~~la~ai~~ll~d~~~~~~~~~~ar~~~~~~fs~~~~~~~~~~lY 362 (365)
T cd03825 302 IVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred HHCCCCCEEEECCCC--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 960798279979999--9999999999986999999999999999998689999999999998
No 49
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=99.61 E-value=1.4e-13 Score=114.54 Aligned_cols=295 Identities=18% Similarity=0.159 Sum_probs=161.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 69998788525620799999999965983999957237-67624446875168752565653312332111000121101
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
+|.|--+ |-.|+.=-..+.++|.++||+|.+.+-..+ ...+.+..+..++.+ +. .+.+....+... .....+
T Consensus 2 kIwiDI~-~p~hvhfFk~iI~eL~k~GheV~iTaR~~~~~~~LL~~y~i~~~~i--G~-~g~s~~~Kl~~~---~~R~~~ 74 (335)
T pfam04007 2 KVWIDIT-NAPHVHFFKPIISELEKEGYEVLLTCRKFGELPELLRSLGFQVKSI--GK-HGATLIKKLLSS---AERVYL 74 (335)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEE--CC-CCCCHHHHHHHH---HHHHHH
T ss_conf 3999789-9508888999999998689889999961351999999769976997--58-888889999999---999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCC-CCC-CCCCC-E
Q ss_conf 35554203444243126532102478886234110122153200156778899999874134--3222-235-56673-2
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGL--VSSQ-KKV-LLRKI-I 159 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~--~~~~-~~~-~~~k~-~ 159 (369)
..+++++++||+.+|.|+ ..+..+|..+|+|.+...-|-..-..||+..++++.+++.. +... ..+ ...++ .
T Consensus 75 L~~~~~~~~PDv~is~~S---~~a~~va~~LgipsI~f~Dteha~~~~~Lt~Pf~~~i~~P~~~~~~~~~~~G~~~~i~~ 151 (335)
T pfam04007 75 LTKLIPEKKPDVAIMKNS---MELPRVAFGLRIPSIIVLDNEHALAANKLTFPLADYILVPEIIDDEFLRFFGADNRIRT 151 (335)
T ss_pred HHHHHHHHCCCEEEECCC---HHHHHHHHHCCCCEEEEECCHHHCCCCEEEEECCCEEECCCCCCHHHHHHHCCCCCEEE
T ss_conf 999988629978994488---01999998829987999477554123302312386888124467789986087785676
Q ss_pred EEECC----CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 53044----4324565433344331144781489863043222102---3334454432320246606776202551677
Q gi|254781097|r 160 VTGNP----IRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS---DIVPKSIALIPEMQRKRLVIMQQVREDDKEK 232 (369)
Q Consensus 160 ~~G~P----vR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln---~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~ 232 (369)
|-|.- +. .| +....-....+.+....|++=--|-.|...+ ..+.+.++.+.+... ++.++ .......+
T Consensus 152 y~g~~E~a~l~-~F-~Pd~~vl~~lgl~~~~yIvvR~~~~~A~y~~g~~~i~~~ii~~l~~~~~-~iv~~--pr~~~q~~ 226 (335)
T pfam04007 152 YPGIKEIANIS-DY-VPDPEILKKLGLEFEEYIVMRPEPLASSYVNGHESILPEIIEMLTKEGV-NIIYF--PRNKEQRE 226 (335)
T ss_pred ECCCCEEEECC-CC-CCCHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHHHHHCCC-CEEEE--CCCCHHHH
T ss_conf 66844143216-66-8986578764998798899961645560011442159999999987598-19997--58703667
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 65322100111134544445144430044899725420233345529604875335524898999899999889889980
Q gi|254781097|r 233 VQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVIT 312 (369)
Q Consensus 233 ~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~ 312 (369)
.+.. .++.+.+-.-|..+++..||++|+ +||++.+|++.+|+|+|.. ||... ++ -=++|.+.|.-+...
T Consensus 227 ---~~~~--~~v~i~~~~vd~~~Lly~adl~Ig-~GgTMa~EAAlLGtPaIs~-~p~~~-~~---vd~~l~~~gl~~~~~ 295 (335)
T pfam04007 227 ---IFRG--FDVIIPKKPVDTLSLLYYSDLVIG-AGGTMNREAALLGTPAVSC-YPGKL-LA---VDKYLIEKGEMYHST 295 (335)
T ss_pred ---HHCC--CCEECCCCCCCHHHHHHHCCEEEC-CCHHHHHHHHHHCCCEEEE-CCCCC-CH---HHHHHHHCCCEEEEC
T ss_conf ---7504--770367888777888865468972-7568999999828987984-38852-13---679998679879618
Q ss_pred HHCCCHHHHHHHHHHHHC
Q ss_conf 001998999999999861
Q gi|254781097|r 313 ENFLSPERLAEELCSAMK 330 (369)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~ 330 (369)
+++++.+.+.+.+.
T Consensus 296 ----d~~~i~~~v~~~~~ 309 (335)
T pfam04007 296 ----DPREIVNYVISNLK 309 (335)
T ss_pred ----CHHHHHHHHHHHHH
T ss_conf ----98999999999860
No 50
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.60 E-value=2.7e-12 Score=105.51 Aligned_cols=326 Identities=13% Similarity=0.071 Sum_probs=168.4
Q ss_pred CCEEEEECC---CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 876999878---85256207999999999659839999572376762444-68751687525656533123321110001
Q gi|254781097|r 4 NNVILLVAG---GTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF-PADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 4 ~~~ili~~g---GTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
|-||++... |.||=-.-...++++|.++++++.++.-.......... ...... ..... ...+ +....
T Consensus 2 ~MKIlfi~~~l~~~GGaErvl~~La~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-------~~~~~ 72 (361)
T PRK09922 2 KMKIAFIGEAVSGFGGMETVISNVINTFENSKINCEMFFFCRNDKMDKAWLKKIKYA-QSFSN-IKLS-------FLRRA 72 (361)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCCCCE-EECCC-CCCC-------HHHHH
T ss_conf 709999999999988049999999999987199879999934985415576447722-43366-5520-------24578
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCC--EEECCCCCCHH--HHHHHHHHHHHH-HCCC--CC--CC
Q ss_conf 2110135554203444243126532102478886234110--12215320015--677889999987-4134--32--22
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPS--MVHEQNVIMGK--ANRLLSWGVQII-ARGL--VS--SQ 150 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~--vihEqN~v~G~--~nk~l~~~a~~v-~~~~--~~--~~ 150 (369)
...+..++++++.+||+|++.......-+.+++...+.|+ +.+........ .......+++.+ +++- .+ ..
T Consensus 73 ~~~~~l~~~ik~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~ii~~~h~~~~~~~~~~~~~~~~~d~~i~vS~~~~~~~~~ 152 (361)
T PRK09922 73 KHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAECITLVYADYHLAISSGIKEQMIA 152 (361)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
T ss_conf 99999999999709999999880689999999998299958999755653426789989998588569957899999997
Q ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC---CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 235566732530444324565433344331144781489863043---22210233344544323202466067762025
Q gi|254781097|r 151 KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQ---GAKVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 151 ~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~---Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
...+.+|+.++.||+..+- ........+.+..++..| -+ |-..+ ...++.+.... .++.+...+..
T Consensus 153 ~~~~~~ki~vI~N~i~~~~-----~~~~~~~~~~~~~il~vG-Rl~~~~qK~~----~~li~a~~~~~-~~~~L~IvG~G 221 (361)
T PRK09922 153 RGISAQRISVIYNPVEIKT-----IIIPPPERDKPAVFLYVG-RLKFEGQKNV----KELFDGLSRTT-GEWQLHIIGDG 221 (361)
T ss_pred CCCCHHCEEEEECCCCHHH-----CCCCCHHHCCCCEEEEEE-CCCCCCCCCH----HHHHHHHHHHC-CCCEEEEEEEE
T ss_conf 0997542999959917354-----046750315787799995-4445256899----99999998548-99489999843
Q ss_pred CCHHHHHHHHHHCC--CCCCCCCCCCC----CHHHHHCCCEEE--ECC-C-CHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 51677653221001--11134544445----144430044899--725-4-20233345529604875335524898999
Q gi|254781097|r 228 DDKEKVQKQYDELG--CKATLACFFKD----IERYIVEANLLI--CRS-G-ALTVSEIAVIGRPAILVPYPHSVDQDQLH 297 (369)
Q Consensus 228 ~~~~~~~~~~~~~~--~~~~v~~f~~~----m~~~~~~aDlvI--sra-G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~ 297 (369)
.+.+++++...+.+ .++.+.+|.+| +.++|+.||+.| |+. | ++++.|++++|+|.|.---|. +
T Consensus 222 ~~~~~L~~~i~~l~l~~~V~flG~~~np~~~l~~~~~~adifVl~S~~EGfp~vllEAma~G~PvIatd~~~---G---- 294 (361)
T PRK09922 222 SDFEKCKAYSRELGIEQRIIWHGWQSNPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS---G---- 294 (361)
T ss_pred CCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEECCCC---C----
T ss_conf 889999999998389873899067598799999998513499964755688728999999599899975999---9----
Q ss_pred HHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHH--HHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999988988998000199899999999986189999999--99998527832799999999
Q gi|254781097|r 298 NAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQM--AKQVSMKGKPQAVLMLSDLV 358 (369)
Q Consensus 298 NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m--~~~~~~~~~~~aa~~i~~~i 358 (369)
..+.+++.-.|++++..| .+.|+++|..+++|+.+...- +....+..+.++-.++.+-+
T Consensus 295 ~~EiI~dg~nG~Lv~~~d--~~~la~~i~~li~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (361)
T PRK09922 295 PRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQHDIIPGSIEKFYDVLYFKNLNNAL 355 (361)
T ss_pred CHHHHCCCCCEEEECCCC--HHHHHHHHHHHHHCHHHCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 088715898379977999--9999999999984822139999999998646899999999999
No 51
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.60 E-value=4e-11 Score=97.28 Aligned_cols=321 Identities=15% Similarity=0.147 Sum_probs=179.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEEE-CHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 7699987885256207999999999659--8399995-723767624446875168752565653312332111000121
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRG--YAVYLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g--~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
+.|-|=|.. -|.+..+..+.++|.++. +.+.+.+ ...+.....+.......... . |+ -.
T Consensus 50 ~~IW~HaaS-vGE~~~~~pli~~l~~~~p~~~ilvTt~T~sg~~~~~~~~~~~~~~~y-l------P~----------D~ 111 (423)
T PRK05749 50 PLIWFHAVS-VGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAKALFGDDVEHVY-L------PY----------DL 111 (423)
T ss_pred CEEEEEECC-HHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEE-E------CC----------CC
T ss_conf 859998287-989999999999999629997499983783099999986689737999-2------24----------78
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEEECCCCCCHH-H-H--HHHHHHHHHHHCCCCC-------C
Q ss_conf 1013555420344424312653210247-888623411012215320015-6-7--7889999987413432-------2
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMVHEQNVIMGK-A-N--RLLSWGVQIIARGLVS-------S 149 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vihEqN~v~G~-~-n--k~l~~~a~~v~~~~~~-------~ 149 (369)
....++.++.++||++|-+..= -=|-. ..|+..+||+++- |+..+. + . +++.++.+.++..|.. .
T Consensus 112 ~~~~~rfl~~~~P~~~i~~E~E-iWPnli~~~~~~~Ip~~li--NaR~s~~S~~~y~~~~~~~~~~l~~~~~i~~qs~~~ 188 (423)
T PRK05749 112 PFAVRRFLRFWRPKLLIIMETE-LWPNLIAEAKKRGIPLVLA--NARLSERSFKRYAKFKRFYRLLFKNIDLVLAQSEED 188 (423)
T ss_pred HHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHCCCCEEEE--CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf 7999999997398879986203-1088999996278866765--251163367666766999999997427665269999
Q ss_pred CC---CC-CCCCCEEEECCCCHHHH----HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 22---35-56673253044432456----543334433114478148986304322210233344544323202466067
Q gi|254781097|r 150 QK---KV-LLRKIIVTGNPIRSSLI----KMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVI 221 (369)
Q Consensus 150 ~~---~~-~~~k~~~~G~PvR~~~~----~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v 221 (369)
.+ .+ ..+++.++|+. |-+.. ........+....+.. +++ .||.-...- +.+.+++..+.+.. +++.+
T Consensus 189 ~~r~~~lG~~~~v~v~Gnl-Kfd~~~~~~~~~~~~~~~~~~~~~~-v~v-agSth~~EE-~iil~~~~~l~~~~-~~~~l 263 (423)
T PRK05749 189 AERFLALGAKNEVTVTGNL-KFDIEIPPELAARAAALRRQLPNRP-VWI-AASTHEGEE-ELVLDAHQALLKQF-PNLLL 263 (423)
T ss_pred HHHHHHCCCCCCEEECCCC-CCCCCCCHHHHHHHHHHHHHHCCCC-EEE-EEECCHHHH-HHHHHHHHHHHHCC-CCCEE
T ss_conf 9999975999743876863-2245787110788999999818996-899-992887699-99999999997408-78289
Q ss_pred EEEECCCCH---HHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHCCCEEEE------CCCCHHHHHHHH
Q ss_conf 762025516---7765322100111---------------1345444451444300448997------254202333455
Q gi|254781097|r 222 MQQVREDDK---EKVQKQYDELGCK---------------ATLACFFKDIERYIVEANLLIC------RSGALTVSEIAV 277 (369)
Q Consensus 222 ~~~~g~~~~---~~~~~~~~~~~~~---------------~~v~~f~~~m~~~~~~aDlvIs------raG~~Ti~E~~~ 277 (369)
+.. +++. +++.+.....+.+ +.+..-.-+|..+|+.||+++- ++|++.+ |.++
T Consensus 264 Iia--PRHpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~Vli~Dt~GeL~~~Y~~a~iafvGGsf~~~GGHN~l-Epa~ 340 (423)
T PRK05749 264 ILV--PRHPERFKEVEELLKKAGLSYVRRSQGEAPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKIGGHNPL-EPAA 340 (423)
T ss_pred EEE--CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCHH-HHHH
T ss_conf 994--7877679999999996799779827999999887299988887588999857878982776888995979-9998
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCHHHHHHH
Q ss_conf 29604875335524898999899999889889980001998999999999861899999999999852--7832799999
Q gi|254781097|r 278 IGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK--GKPQAVLMLS 355 (369)
Q Consensus 278 ~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~--~~~~aa~~i~ 355 (369)
+|+|.+.=|. .+|. .+-++.|.+.|++..+. ++++|.+.+..+++||+.+++|+++++++ ....|++++.
T Consensus 341 ~g~pvi~GP~---~~nf-~e~~~~L~~~g~~~~v~----~~~eL~~~~~~ll~~~~~~~~~~~~a~~~v~~~~Gat~r~~ 412 (423)
T PRK05749 341 FGVPVISGPH---TFNF-KEIFERLLQAGAAIQVE----DAEDLAKAVSSLLTDPDAREAMGEAGVAFLKQNRGALQRTL 412 (423)
T ss_pred CCCCEEECCC---CCCH-HHHHHHHHHCCCEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3998899938---3277-99999999789958968----99999999999976999999999999999997847999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781097|r 356 DLVEKLA 362 (369)
Q Consensus 356 ~~i~~la 362 (369)
+.|.+.-
T Consensus 413 ~~i~~~L 419 (423)
T PRK05749 413 QLLKPYL 419 (423)
T ss_pred HHHHHHC
T ss_conf 9999763
No 52
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.59 E-value=4.6e-13 Score=110.85 Aligned_cols=331 Identities=14% Similarity=0.128 Sum_probs=181.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ECHHHH-------HHHCCCCCCCE-EEEECCCCCCCCHHHHHHH
Q ss_conf 769998788525620799999999965-9839999-572376-------76244468751-6875256565331233211
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNR-GYAVYLI-TDRRAR-------SFITDFPADSI-YEIVSSQVRFSNPFVFWNS 74 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~-g~~v~~~-~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 74 (369)
|||++..| |---..-...+.++|++. ..++.++ |+.... ..+.. .++.. ..+. ..............
T Consensus 1 kKI~~v~G-tRpe~iklapli~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~-d~~~~~~~~~-~~~~~~~~~~~~~~ 77 (365)
T TIGR03568 1 KKICVVTG-TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK-DGFDIDEKIE-ILLDSDSNAGMAKS 77 (365)
T ss_pred CEEEEEEE-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCHHHHHHH-CCCCCCCCCC-CCCCCCCCCCHHHH
T ss_conf 94999985-077299999999999728998889999077784110708999997-5798765576-54568985339999
Q ss_pred HHHCCCCCHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCCCCEEECC-----CCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 1000121101355542034442431265-3210247888623411012215-----320015677889999987413432
Q gi|254781097|r 75 LVILWKAFIASLRLIKKLKPNVVVGFGG-YHSISPLLAGMILRIPSMVHEQ-----NVIMGKANRLLSWGVQIIARGLVS 148 (369)
Q Consensus 75 l~~~~~~~~~~~~ii~~~kPDvVi~tGG-y~s~P~~iaA~~l~iP~vihEq-----N~v~G~~nk~l~~~a~~v~~~~~~ 148 (369)
+...+.+.-+++++++||+|+-.|- +.++.+.+||..++||++..|. |.+.-...+..++.++..|++.+.
T Consensus 78 ---~~~~~~~~~~~l~~~kPD~VlV~GDt~stla~alaA~~~~Ipv~HveaGlrs~~~~dE~~R~~i~~lS~~hf~~t~~ 154 (365)
T TIGR03568 78 ---MGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAIDESIRHAITKLSHLHFVATEE 154 (365)
T ss_pred ---HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf ---99999999999854399899994898607799999998198189996786458988658888989987777323357
Q ss_pred CCCC-----CCCCCCEEEECCCCHHHHHHHH----HHHHHHCCC-CCCEEEEEEC--CCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 2223-----5566732530444324565433----344331144-7814898630--43222102333445443232024
Q gi|254781097|r 149 SQKK-----VLLRKIIVTGNPIRSSLIKMKD----IPYQSSDLD-QPFHLLVFGG--SQGAKVFSDIVPKSIALIPEMQR 216 (369)
Q Consensus 149 ~~~~-----~~~~k~~~~G~PvR~~~~~~~~----~~~~~~~~~-~~~~ILv~GG--S~Ga~~ln~~v~~~~~~l~~~~~ 216 (369)
+.+. ....++.+||+|+=+.+..... .-....+.+ ++..+|++-= +.=.....+.+...++.+.+..
T Consensus 155 a~~nL~~eG~~~~~I~~vGn~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~LvT~Hp~~~~~~~~~~~l~~il~al~~~~- 233 (365)
T TIGR03568 155 YRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELN- 233 (365)
T ss_pred HHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC-
T ss_conf 8899986247867089827718999862221378899987412136876999953532566568999999999997208-
Q ss_pred CCCEEEEEECCCCHHHHH---HHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 660677620255167765---322100111134544--445144430044899725420233345529604875335524
Q gi|254781097|r 217 KRLVIMQQVREDDKEKVQ---KQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSV 291 (369)
Q Consensus 217 ~~~~v~~~~g~~~~~~~~---~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~ 291 (369)
..+.+++=........+. +.+.....|+.+.+- ..++-.+|+.|+++||-+|++.. |+..+|+|+|-|=
T Consensus 234 ~~~~~i~Pn~d~~~~~i~~~i~~~~~~~~ni~~i~pl~y~~fl~ll~~a~~vitdSsggi~-Ea~~l~~P~i~i~----- 307 (365)
T TIGR03568 234 KNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGII-EAPSFGVPTINIG----- 307 (365)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCEE-EECCCCCCEEEEC-----
T ss_conf 8817982698602788999999997079988996678889999999870199985886546-7010498678837-----
Q ss_pred CCHHHHHHHHHHHCCCEEE-EEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8989998999998898899-800019989999999998618999999999998527832799999999
Q gi|254781097|r 292 DQDQLHNAYYLQEGGGAKV-ITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLV 358 (369)
Q Consensus 292 ~~hQ~~NA~~l~~~G~a~~-i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i 358 (369)
+-|+.- ..|..++ +. .+++.+.+++..++ +++....|.....-+++++|++||++.|
T Consensus 308 -~Rq~~r-----~~~~nvi~v~---~~~~~I~~ai~~~~-~~~~~~~~~~~~npyGDG~as~rIv~iL 365 (365)
T TIGR03568 308 -TRQKGR-----LRADSVIDVD---PDKEEIVKAIEKLL-DPAFKKSLKNVKNPYGDGNSSERIIEIL 365 (365)
T ss_pred -CCCCCC-----CCCCEEEEEC---CCHHHHHHHHHHHH-CHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf -885555-----2476089817---99999999999974-8789875530899896998999999869
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.58 E-value=4.7e-12 Score=103.80 Aligned_cols=323 Identities=13% Similarity=0.098 Sum_probs=157.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHH---HHHHHHHHCCCCC
Q ss_conf 6999878852562079999999996598399995723767624446875168752565653312---3321110001211
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPF---VFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 82 (369)
+||+.-..--|++ ..|+++|.++||||.++|........ .......+........... ..+..........
T Consensus 1 ~~~~~~~~~p~q~---r~LA~~La~rGHeV~Vit~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (396)
T cd03818 1 RILFVHQNFPGQF---RHLAPALAAQGHEVVFLTEPNAAPPP---GGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAV 74 (396)
T ss_pred CEEEECCCCCHHH---HHHHHHHHHCCCEEEEEECCCCCCCC---CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9899889988169---99999999789989999689998899---97268885336888777773234478888878999
Q ss_pred HHH-HHHH-HHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-----CC-CCCCHH----------HHHHHHH-------
Q ss_conf 013-5554-203444243126532102478886234110122-----15-320015----------6778899-------
Q gi|254781097|r 83 IAS-LRLI-KKLKPNVVVGFGGYHSISPLLAGMILRIPSMVH-----EQ-NVIMGK----------ANRLLSW------- 137 (369)
Q Consensus 83 ~~~-~~ii-~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vih-----Eq-N~v~G~----------~nk~l~~------- 137 (369)
.+. ..+. +.++||+|.+-.|+. .+..+...+.++|++.+ -. ..-.|. ..++...
T Consensus 75 ~~~~~~~~~~~~~PDvVh~H~~~~-~~l~l~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (396)
T cd03818 75 ARALLALRAKGFRPDVIVAHPGWG-ETLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLA 153 (396)
T ss_pred HHHHHHHHHCCCCCCEEEECCCHH-HHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999997189998899887058-9999998565687887641241036544677833365566899999988888888
Q ss_pred --HHHHHHCCCCCCCC---CCCCCCCEEEECCCCHHHHHHHHHHHH----HHC-CCCCCEEEEEECCCCC-CCHHHHHHH
Q ss_conf --99987413432222---355667325304443245654333443----311-4478148986304322-210233344
Q gi|254781097|r 138 --GVQIIARGLVSSQK---KVLLRKIIVTGNPIRSSLIKMKDIPYQ----SSD-LDQPFHLLVFGGSQGA-KVFSDIVPK 206 (369)
Q Consensus 138 --~a~~v~~~~~~~~~---~~~~~k~~~~G~PvR~~~~~~~~~~~~----~~~-~~~~~~ILv~GGS~Ga-~~ln~~v~~ 206 (369)
.++.+.+....... ....+++.++.|-|..+.+........ ... ..+...|+..|-.+.. +.+.. +.+
T Consensus 154 ~~~ad~~v~~s~~~~~~~~~~~~~~i~VipnGVD~~~f~P~~~a~~~~~~~~~~~~~~~vvl~vGR~l~~~KG~~~-Ll~ 232 (396)
T cd03818 154 LAQADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHV-FMR 232 (396)
T ss_pred HHHCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHH-HHH
T ss_conf 9848788718899997526762483799826877133388804555442114689998699997765130448999-999
Q ss_pred HHHHHHHHCCCCCEEEEEECCC--------C----HHHHHHHHHHCC--CCCCCCCCC--CCCHHHHHCCCEEE--ECCC
Q ss_conf 5443232024660677620255--------1----677653221001--111345444--45144430044899--7254
Q gi|254781097|r 207 SIALIPEMQRKRLVIMQQVRED--------D----KEKVQKQYDELG--CKATLACFF--KDIERYIVEANLLI--CRSG 268 (369)
Q Consensus 207 ~~~~l~~~~~~~~~v~~~~g~~--------~----~~~~~~~~~~~~--~~~~v~~f~--~~m~~~~~~aDlvI--sraG 268 (369)
++..+... .++..++.+++.. + .+.+...+.... .++++.+++ ++++++|+.||+.+ |++.
T Consensus 233 A~~~l~~~-~p~~~lvivG~~~~~~g~~~~~~~~~~~~ll~~l~~~~~~~rV~F~G~v~~~~l~~~l~~adv~v~PS~~~ 311 (396)
T cd03818 233 ALPRLLRA-RPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPF 311 (396)
T ss_pred HHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHEEEEEEECCEEC
T ss_conf 99999987-89968999926874456667654379999998632236763689708985899988751003999531404
Q ss_pred CH--HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 20--2333455296048753355248989998999998898899800019989999999998618999999999998527
Q gi|254781097|r 269 AL--TVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG 346 (369)
Q Consensus 269 ~~--Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~ 346 (369)
+. ++.|+++||+|.|.-- +++ ..+.+.+...|++++..| ++.|+++|.++++||+.+++|++++++..
T Consensus 312 ~~~~~llEAMA~G~PVVas~----~gg----~~e~V~dg~~G~Lvpp~d--~~~LA~ai~~lL~dp~~r~~lg~aaR~~~ 381 (396)
T cd03818 312 VLSWSLLEAMACGCLVVGSD----TAP----VREVITDGENGLLVDFFD--PDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred CCCCHHHHHHHCCCCEEEEC----CCC----CHHHHCCCCCEEEECCCC--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 55760899997799899927----998----265525998789969999--99999999999759999999999999999
Q ss_pred C
Q ss_conf 8
Q gi|254781097|r 347 K 347 (369)
Q Consensus 347 ~ 347 (369)
.
T Consensus 382 ~ 382 (396)
T cd03818 382 L 382 (396)
T ss_pred H
T ss_conf 9
No 54
>KOG1192 consensus
Probab=99.55 E-value=2.4e-11 Score=98.82 Aligned_cols=184 Identities=20% Similarity=0.196 Sum_probs=115.5
Q ss_pred CCCCEEEECCCCHHHHHHHH-HHHHHHC-CC--CCCEEEEEECCCCC-CCHHHHHHHHH-HHHHHHCCCCCEEEEEECCC
Q ss_conf 66732530444324565433-3443311-44--78148986304322-21023334454-43232024660677620255
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKD-IPYQSSD-LD--QPFHLLVFGGSQGA-KVFSDIVPKSI-ALIPEMQRKRLVIMQQVRED 228 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~-~~~~~~~-~~--~~~~ILv~GGS~Ga-~~ln~~v~~~~-~~l~~~~~~~~~v~~~~g~~ 228 (369)
..++..+| |+-........ ......+ .+ ..-.|+|.-||+.. ..+.+...+.+ ..+.. . ++...++.....
T Consensus 244 ~~~v~~IG-~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~s~~lp~~~~~~l~~~l~~-~-~~~~FiW~~~~~ 320 (496)
T KOG1192 244 LPKVIPIG-PLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES-L-QGVTFLWKYRPD 320 (496)
T ss_pred CCCEEEEC-CEEECCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC-C-CCCCEEEEEECC
T ss_conf 79879988-65565655676437889962665679889998888766255999999999999854-7-896479999368
Q ss_pred CHHHHHHHHHH-CCCCCCCCCCCCCCHHH--HHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 16776532210-01111345444451444--3004489972542023334552960487533552489899989999988
Q gi|254781097|r 229 DKEKVQKQYDE-LGCKATLACFFKDIERY--IVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG 305 (369)
Q Consensus 229 ~~~~~~~~~~~-~~~~~~v~~f~~~m~~~--~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~ 305 (369)
....+.+...+ ...|+...+|.++...+ -.+..+.|||+|-+|+.|+++.|+|+|.+|+= .+|..||+.+++.
T Consensus 321 ~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf----~DQ~~Na~~i~~~ 396 (496)
T KOG1192 321 DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF----GDQPLNARLLVRH 396 (496)
T ss_pred CCCHHHHCCCCCCCCCEEECCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEECCCCC----CCCHHHHHHHHHC
T ss_conf 520222244434676184126658533535687417088518688899998659984347863----3538899999972
Q ss_pred CCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 9889980001998999999999861899999999999852
Q gi|254781097|r 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK 345 (369)
Q Consensus 306 G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~ 345 (369)
|.+.+....+++...+.+++..++.++++.+..++-+..+
T Consensus 397 g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~ 436 (496)
T KOG1192 397 GGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEIL 436 (496)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7548996212331256777776507699999999999985
No 55
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.54 E-value=3.4e-12 Score=104.79 Aligned_cols=316 Identities=15% Similarity=0.076 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH-CCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 885256207999999999659839999572376762-4446875168752565653312332111000121101355542
Q gi|254781097|r 12 GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFI-TDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIK 90 (369)
Q Consensus 12 gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 90 (369)
||.+=| +..|+++|.++||+|.+++........ ....+...+.+. ....+.... +.. .+.. .....
T Consensus 15 GG~e~~---v~~La~~L~~~Gh~V~v~t~~~~~~~~~~~~~gv~~~~~~---~~~~~~~~~---~~~---~~~~-~~~~~ 81 (363)
T cd04955 15 GGFETF---VEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIP---APEIGGLGT---IIY---DILA-ILHAL 81 (363)
T ss_pred CCHHHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCEEECCEEEEEEC---CCCCCCHHH---HHH---HHHH-HHHHH
T ss_conf 878999---9999999997799799998789888875134777999927---644451677---898---9999-99998
Q ss_pred HCCCCEEEEC-CCCCCHHHHHHHHHCCCCCEEECCCC---C--CHH-HHHHH-------HHHHHHHHCCCCCCCC---CC
Q ss_conf 0344424312-65321024788862341101221532---0--015-67788-------9999987413432222---35
Q gi|254781097|r 91 KLKPNVVVGF-GGYHSISPLLAGMILRIPSMVHEQNV---I--MGK-ANRLL-------SWGVQIIARGLVSSQK---KV 153 (369)
Q Consensus 91 ~~kPDvVi~t-GGy~s~P~~iaA~~l~iP~vihEqN~---v--~G~-~nk~l-------~~~a~~v~~~~~~~~~---~~ 153 (369)
..+||+++.- -|+.+.+....++.+++|++++-... . -+. ..+++ .+.++.+.+......+ ..
T Consensus 82 ~~~~d~~~~h~~~~~~~~~~~~~~~~~~~~v~t~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~ 161 (363)
T cd04955 82 FVKRDIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEK 161 (363)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHH
T ss_conf 60899899997781689999999733983999936740113220178999999999999860899999988999999986
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 56673253044432456543334433114478148986304322-21023334454432320246606776202551677
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEK 232 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~ 232 (369)
+..+..++.|.|...-...........+......+|.+ |.+-. +.+. .+.+++..+.. ...+.|+ ++..+.+.
T Consensus 162 ~~~~~~vIpnGvd~~~~~~~~~~~~~~~~~~~~~il~v-gRl~~~Kg~~-~ll~A~~~l~~--~~~l~ii--G~g~~~~~ 235 (363)
T cd04955 162 YGRDSTYIPYGADHVVSSEEDEILKKYGLEPGRYYLLV-GRIVPENNID-DLIEAFSKSNS--GKKLVIV--GNADHNTP 235 (363)
T ss_pred CCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEE-ECCCCCCCHH-HHHHHHHHHCC--CCEEEEE--CCCCCCCH
T ss_conf 49983997898754677750667987089989889999-4475304799-99999985263--5619997--77776308
Q ss_pred ----HHHHHHHCCCCCCCCCCC--CCCHHHHHCCCEEEE---CCC--CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf ----653221001111345444--451444300448997---254--202333455296048753355248989998999
Q gi|254781097|r 233 ----VQKQYDELGCKATLACFF--KDIERYIVEANLLIC---RSG--ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYY 301 (369)
Q Consensus 233 ----~~~~~~~~~~~~~v~~f~--~~m~~~~~~aDlvIs---raG--~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~ 301 (369)
+.+... ...++.+.+++ +++.++|+.||+++. +.. +.++.|++++|+|.|.--. ++ +.+.
T Consensus 236 ~~~~l~~~~~-~~~~V~flG~~~~~~~~~~~~~ad~~v~pS~~~Eg~~~~~lEAma~G~PVVas~~----~~----~~ev 306 (363)
T cd04955 236 YGKLLKEKAA-ADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDN----PF----NREV 306 (363)
T ss_pred HHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCEEECCC----CC----CCEE
T ss_conf 9999999734-6993797078884778986313544643456667876899999981999999179----98----7069
Q ss_pred HHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 998898899800019989999999998618999999999998527-832799999999999
Q gi|254781097|r 302 LQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKL 361 (369)
Q Consensus 302 l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~l 361 (369)
..+. +..++ +++.|+++|..+++||+.+++|++++++.. ....-+++++..+++
T Consensus 307 ~~~~--~~~~~----~~~~la~~i~~ll~d~~~~~~~g~~ar~~v~~~fsw~~~a~~~~~l 361 (363)
T cd04955 307 LGDK--AIYFK----VGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred ECCC--EEECC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 7588--47779----9899999999997599999999999999999858999999999997
No 56
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=8.9e-12 Score=101.86 Aligned_cols=339 Identities=16% Similarity=0.191 Sum_probs=202.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CEEE-EEECHHH-----HHHHCCCCCC-CEEEEECCCCCCCCHHHHH
Q ss_conf 99887699987885256207999999999659-8399-9957237-----6762444687-5168752565653312332
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRG-YAVY-LITDRRA-----RSFITDFPAD-SIYEIVSSQVRFSNPFVFW 72 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g-~~v~-~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 72 (369)
|+++ ||++.. ||-=-..-...+..++.+.+ .+.. +.|+... ..++..+... .-|.+..... +.+.....
T Consensus 1 m~~~-Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~-~~tl~~~t 77 (383)
T COG0381 1 MKML-KVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKP-GQTLGEIT 77 (383)
T ss_pred CCCE-EEEEEE-ECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHCCCC-CCCHHHHH
T ss_conf 9963-899998-55899998709999998589973599970665427789999998289888831321666-88889999
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCCCCEEECC-----CCC-CHHHHHH-HHHHHHHHHC
Q ss_conf 111000121101355542034442431265-3210247888623411012215-----320-0156778-8999998741
Q gi|254781097|r 73 NSLVILWKAFIASLRLIKKLKPNVVVGFGG-YHSISPLLAGMILRIPSMVHEQ-----NVI-MGKANRL-LSWGVQIIAR 144 (369)
Q Consensus 73 ~~l~~~~~~~~~~~~ii~~~kPDvVi~tGG-y~s~P~~iaA~~l~iP~vihEq-----N~v-~G~~nk~-l~~~a~~v~~ 144 (369)
...+....+++.+++||+|+--|- +.++.+.+||..++||+..-|- |.. |--.||. .+..++.-|+
T Consensus 78 ------~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~~PEE~NR~l~~~~S~~hfa 151 (383)
T COG0381 78 ------GNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLYFPEEINRRLTSHLSDLHFA 151 (383)
T ss_pred ------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ------99999999999862999899917853688999999986893688742544478778379878788776523037
Q ss_pred CCCCCCC-----CCCCCCCEEEECCCCHHHHHHHHHH----HHH---HCCCCCCEEEEEEC---CCCCCCHHHHHHHHHH
Q ss_conf 3432222-----3556673253044432456543334----433---11447814898630---4322210233344544
Q gi|254781097|r 145 GLVSSQK-----KVLLRKIIVTGNPIRSSLIKMKDIP----YQS---SDLDQPFHLLVFGG---SQGAKVFSDIVPKSIA 209 (369)
Q Consensus 145 ~~~~~~~-----~~~~~k~~~~G~PvR~~~~~~~~~~----~~~---~~~~~~~~ILv~GG---S~Ga~~ln~~v~~~~~ 209 (369)
..+.+.+ +.+.+++.+||+|+-+.+....... ... .....+..+||++= +.| ..+- .+.+++.
T Consensus 152 pte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~-~~~~-~i~~al~ 229 (383)
T COG0381 152 PTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVG-EPLE-EICEALR 229 (383)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCHHHCCC-CCHH-HHHHHHH
T ss_conf 7199999999769995516885973999999877641000466776632456738999705554036-4299-9999999
Q ss_pred HHHHHCCCCCEEEEEECCC-CHHHHH-HHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 3232024660677620255-167765-322100111134544--445144430044899725420233345529604875
Q gi|254781097|r 210 LIPEMQRKRLVIMQQVRED-DKEKVQ-KQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 210 ~l~~~~~~~~~v~~~~g~~-~~~~~~-~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
.+.+.. .+..|+--+..+ ...+.. ..+. ...++.+++- +.++..+|..|-+++|-||+.. -|+..+|+|++.+
T Consensus 230 ~i~~~~-~~~~viyp~H~~~~v~e~~~~~L~-~~~~v~li~pl~~~~f~~L~~~a~~iltDSGgiq-EEAp~lg~Pvl~l 306 (383)
T COG0381 230 EIAEEY-PDVIVIYPVHPRPRVRELVLKRLK-NVERVKLIDPLGYLDFHNLMKNAFLILTDSGGIQ-EEAPSLGKPVLVL 306 (383)
T ss_pred HHHHHC-CCCEEEEECCCCHHHHHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHCEEEEECCCCHH-HHHHHCCCCEEEE
T ss_conf 999867-895699747997666688999838-9876798688366989999974509995487135-4477619927761
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3355248989998999998898899800019989999999998618999999999998527832799999999999985
Q gi|254781097|r 286 PYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAHV 364 (369)
Q Consensus 286 P~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~~ 364 (369)
= ..++. - + -.++|..+++.- +.+.+.+++..+++|++..++|++....+++++|+++|++.|+...+.
T Consensus 307 R--~~TER--P---E-~v~agt~~lvg~---~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 307 R--DTTER--P---E-GVEAGTNILVGT---DEENILDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred C--CCCCC--C---C-CEECCCEEEECC---CHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3--67778--4---1-000370487176---589999999998629588998742558886750579999999988520
No 57
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=99.48 E-value=1.7e-12 Score=106.84 Aligned_cols=262 Identities=18% Similarity=0.253 Sum_probs=160.9
Q ss_pred CHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCCCCEEECC-----CCCCHH---HHH-HHHHHHHHHHCCCCCCCC
Q ss_conf 101355542034442431265-3210247888623411012215-----320015---677-889999987413432222
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGG-YHSISPLLAGMILRIPSMVHEQ-----NVIMGK---ANR-LLSWGVQIIARGLVSSQK 151 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGG-y~s~P~~iaA~~l~iP~vihEq-----N~v~G~---~nk-~l~~~a~~v~~~~~~~~~ 151 (369)
+.+.-+++.+.+||+|+-.|- |.++++.+||..++||++..|. |..-|. .|| ...+.++..|++.+...+
T Consensus 56 i~~~~~~l~~~~PD~vlv~GDr~e~la~aiaa~~~~ipi~HiegG~RS~d~t~g~~de~~R~~isklS~~hf~~t~~~~~ 135 (346)
T pfam02350 56 LIGLEDVLEEEKPDLVLVLGDTNETLAGALAAFYLRIPVAHVEAGLRSFDLTEGMPEEINRHLIDKLSDLHFAPTEEARE 135 (346)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCHHHHH
T ss_conf 99999999982999999968971588999999981984899526874455679993054311466541377246499999
Q ss_pred C-----CCCCCCEEEECCCCHHHHHHHHHHHH------HHCCCCCCEEEEEEC---CCCC-CCHHHHHHHHHHHHHHHCC
Q ss_conf 3-----55667325304443245654333443------311447814898630---4322-2102333445443232024
Q gi|254781097|r 152 K-----VLLRKIIVTGNPIRSSLIKMKDIPYQ------SSDLDQPFHLLVFGG---SQGA-KVFSDIVPKSIALIPEMQR 216 (369)
Q Consensus 152 ~-----~~~~k~~~~G~PvR~~~~~~~~~~~~------~~~~~~~~~ILv~GG---S~Ga-~~ln~~v~~~~~~l~~~~~ 216 (369)
. ....++..||+|.-+.+....+.... ......+..+|++== .... ..+ ..+.+.++.+.+...
T Consensus 136 ~L~~~G~~~~~If~vG~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~iLvt~Hr~en~~~~~~~-~~i~~~l~~l~~~~~ 214 (346)
T pfam02350 136 NLLQEGEPPERIFVTGNTVIDALLLSREEIEESLEISGILADLGKRYILVTFHRRENEDDPERL-EQILEALKALAERPD 214 (346)
T ss_pred HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCC
T ss_conf 9998199947289979719999999998731015566640345687799996775344764489-999999999983568
Q ss_pred CCCEEEEEECC--CCHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 66067762025--5167765322100111134544--4451444300448997254202333455296048753355248
Q gi|254781097|r 217 KRLVIMQQVRE--DDKEKVQKQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVD 292 (369)
Q Consensus 217 ~~~~v~~~~g~--~~~~~~~~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~ 292 (369)
..++..... .....+.+.+... .|+.++.- ..++-.+|+.|++|||-||++- -|+.++|+|+|.|= .. .
T Consensus 215 --~~~i~~~~n~d~~~~~i~~~l~~~-~ni~~~~~l~~~~fl~ll~~s~~vigdSs~~~-~Ea~~l~~P~iniR--~~-g 287 (346)
T pfam02350 215 --VPVVFPVHNNPRTRKRINELLEEL-PNIRLIEPLGYLDFLSLLKNADLVITDSGGIQ-EEAPSLGKPVLNLR--DT-T 287 (346)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHCCEEEECCCCHH-HHHHHHCCCEEEEC--CC-C
T ss_conf --609998379920778999998347-98799656899999999985188983686216-66665089689827--88-8
Q ss_pred CHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9899989999988988998000199899999999986189999999999985278327999999999
Q gi|254781097|r 293 QDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVE 359 (369)
Q Consensus 293 ~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~ 359 (369)
..|+ .. ..|..+++. .+.+.+.+++..+++++..++.+...-.-+++++|+++|++.|+
T Consensus 288 eRqe--gr---~~g~nvlv~---~~~~~I~~ai~~~l~~~~~~~~~~~~~npyGdG~as~rI~~il~ 346 (346)
T pfam02350 288 ERPE--GR---EAGTNVLVG---TDKEAILAAIEKLLDDEEEYEKMSNAVNPYGDGNASERIVDILK 346 (346)
T ss_pred CCHH--HH---HHCEEEEEC---CCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 8875--69---538469978---99999999999997196777641247898989869999999969
No 58
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.47 E-value=2.2e-11 Score=99.10 Aligned_cols=312 Identities=14% Similarity=0.078 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 79999999996598399995723767624446875168752565653312332111000121101355542034442431
Q gi|254781097|r 20 PAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVG 99 (369)
Q Consensus 20 palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~kPDvVi~ 99 (369)
=...|+++|.++|+++.+++....................... ... ... ............+...++|++.+
T Consensus 20 y~~~L~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~---~~~~~~~~~~~~~~~~~~dv~h~ 91 (365)
T cd03809 20 YARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLP--RRL---LWG---LLFLLRAGDRLLLLLLGLDLLHS 91 (365)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--CCC---HHH---HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999997459977999935864221111123541013566--531---133---43577888899998559999998
Q ss_pred CCCCCCHHHHHHHHHCCCCCE--EEC------CCCCCHHHHH-------HHHHHHHHHHCCCCCCC----C--CCCCCCC
Q ss_conf 265321024788862341101--221------5320015677-------88999998741343222----2--3556673
Q gi|254781097|r 100 FGGYHSISPLLAGMILRIPSM--VHE------QNVIMGKANR-------LLSWGVQIIARGLVSSQ----K--KVLLRKI 158 (369)
Q Consensus 100 tGGy~s~P~~iaA~~l~iP~v--ihE------qN~v~G~~nk-------~l~~~a~~v~~~~~~~~----~--~~~~~k~ 158 (369)
+.. ..| .....++|++ +|. ++.......+ ...+.+|.|.+..+.+. + ..+.+|+
T Consensus 92 ~~~--~~~---~~~~~~~~~V~t~HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~vS~~~~~~~~~~~~~~~~~i 166 (365)
T cd03809 92 PHN--TAP---LLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKI 166 (365)
T ss_pred CCC--HHH---HHHHCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCHHHE
T ss_conf 983--265---564359989999788506538200797789999999999999699999979999999999849885898
Q ss_pred EEEECCCCHHHHHHHHHH--HHHHCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCHHHHH
Q ss_conf 253044432456543334--433114478148986304322-21023334454432320246606776202-55167765
Q gi|254781097|r 159 IVTGNPIRSSLIKMKDIP--YQSSDLDQPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVR-EDDKEKVQ 234 (369)
Q Consensus 159 ~~~G~PvR~~~~~~~~~~--~~~~~~~~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g-~~~~~~~~ 234 (369)
.++.+.+...+....... ...........||..| +... +.+. .+.+++..+.+... .+.++..++ ....+.+.
T Consensus 167 ~vi~~gv~~~~~~~~~~~~~~~~~~~~~~~~il~vg-~~~~~K~~~-~li~a~~~l~~~~~-~~~lvivG~~~~~~~~~~ 243 (365)
T cd03809 167 VVIPLGVDPRFRPPPAEAEVLRALYLLPRPYFLYVG-TIEPRKNLE-RLLEAFARLPAKGP-DPKLVIVGKRGWLNEELL 243 (365)
T ss_pred EEECCCCCHHCCCCCCHHHHHHHHCCCCCCEEEEEE-CCCCCCCHH-HHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHH
T ss_conf 998155551105887426788874389998899995-364557999-99999999887689-938999778974179999
Q ss_pred HHHHH--CCCCCCCCCCCC--CCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 32210--011113454444--5144430044899725----420233345529604875335524898999899999889
Q gi|254781097|r 235 KQYDE--LGCKATLACFFK--DIERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGG 306 (369)
Q Consensus 235 ~~~~~--~~~~~~v~~f~~--~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G 306 (369)
+.... ...++.+.++++ ++.++|+.||+.|.-| -+.++.|++++|+|.|.-..+. .. +.. .+
T Consensus 244 ~~~~~~~~~~~v~~~g~~~~~~l~~~y~~ad~~v~PS~~EgfGl~~lEAma~G~Pvi~s~~~~----~~----Ei~--g~ 313 (365)
T cd03809 244 ARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LP----EVA--GD 313 (365)
T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCC----CC----EEE--CC
T ss_conf 999965999858993687989999999717743541433578968999998599899907998----73----085--78
Q ss_pred CEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 88998000199899999999986189999999999985278327999999999
Q gi|254781097|r 307 GAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVE 359 (369)
Q Consensus 307 ~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~ 359 (369)
+|.+++.. +++.++++|.++++|++.+++|++++++......-+++++.++
T Consensus 314 ~g~~~~p~--d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~fsW~~~a~~~l 364 (365)
T cd03809 314 AALYFDPL--DPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred CEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 37998999--9999999999998799999999999999999699999999985
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.45 E-value=3e-12 Score=105.16 Aligned_cols=332 Identities=15% Similarity=0.200 Sum_probs=171.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ECHHHHH-----HHCC-CCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 69998788525620799999999965-9839999-5723767-----6244-4687516875256565331233211100
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNR-GYAVYLI-TDRRARS-----FITD-FPADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~-g~~v~~~-~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
||++.+|.- --..-...+..+|++. +.++.++ |+...+. +... +.....+.+... ..+.....+.
T Consensus 1 KI~~vtGtR-ae~~kl~pl~~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~~~~~~~~~~~~---~~~~~~~~~~--- 73 (363)
T cd03786 1 KILVVTGTR-PEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLG---SDSQSLGAQT--- 73 (363)
T ss_pred CEEEEEECH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCHHHHHHCCCCCCEEEECC---CCCCCHHHHH---
T ss_conf 989999313-719999999999974899988999938976701088899982688887785459---9997699999---
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCCCCEEECCCCCC---HH---HHH-HHHHHHHHHHCCCCCC
Q ss_conf 0121101355542034442431265-32102478886234110122153200---15---677-8899999874134322
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGG-YHSISPLLAGMILRIPSMVHEQNVIM---GK---ANR-LLSWGVQIIARGLVSS 149 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGG-y~s~P~~iaA~~l~iP~vihEqN~v~---G~---~nk-~l~~~a~~v~~~~~~~ 149 (369)
...+....+.+.+.+||+|+-.|- |.++++.+||..++||++..|.=.+- |. .|| ...+.++..|++.+..
T Consensus 74 -~~~~~~~~~~l~~~kPD~VlV~GDr~e~la~Alaa~~~~Ipi~HiegG~rs~~~~~~de~~R~~i~kls~lhf~~t~~~ 152 (363)
T cd03786 74 -AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEA 152 (363)
T ss_pred -HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHH
T ss_conf -9999999999997299999994888428799999998198189962643347679987798755221012561461999
Q ss_pred CC-----CCCCCCCEEEECCCCHHHHHHHHHHH-----HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 22-----35566732530444324565433344-----331144781489863043222102333445443232024660
Q gi|254781097|r 150 QK-----KVLLRKIIVTGNPIRSSLIKMKDIPY-----QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRL 219 (369)
Q Consensus 150 ~~-----~~~~~k~~~~G~PvR~~~~~~~~~~~-----~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~ 219 (369)
.+ +....++.+||+|.-+.+........ ..........+|++-=-.-...-.+.+...++.+.+.....+
T Consensus 153 ~~~L~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~lvt~Hr~~n~~~~~~~~~i~~al~~~~~~~~ 232 (363)
T cd03786 153 RRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEEDV 232 (363)
T ss_pred HHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99998615475525773861999999887641032667744545587799996452333568999999999999874396
Q ss_pred EEEEEECCCCHHHHHH---HHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 6776202551677653---22100111134544--445144430044899725420233345529604875335524898
Q gi|254781097|r 220 VIMQQVREDDKEKVQK---QYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQD 294 (369)
Q Consensus 220 ~v~~~~g~~~~~~~~~---~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~h 294 (369)
.++.-........+.+ .+.....++.+.+- ..++..+|..|+++||-|| +-.-|+.++|+|+|.+= +.
T Consensus 233 ~v~~pn~d~~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~~~ll~~a~~vigdSs-Gi~Eea~~l~~P~i~ir------~r 305 (363)
T cd03786 233 PVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLR------DR 305 (363)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEEEEECCC-CCEEEECCCCCCEEEEC------CC
T ss_conf 899977972577899999998557877999788774999999950739982588-86885020698789826------87
Q ss_pred HHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99989999988988998000199899999999986189999999999985278327999999999
Q gi|254781097|r 295 QLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVE 359 (369)
Q Consensus 295 Q~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~ 359 (369)
|+.- .-.+.|....+.. +.+.+.+++..+++++.....+. ..-+++++|+++|++.|+
T Consensus 306 qe~r--e~~~~~~~~~v~~---~~~~I~~~i~~~l~~~~~~~~~~--~npyGdG~as~rI~~iL~ 363 (363)
T cd03786 306 TERP--ETVESGTNVLVGT---DPEAILAAIEKLLSDEFAYSLMS--INPYGDGNASERIVEILK 363 (363)
T ss_pred CCCC--EEHHCCEEEECCC---CHHHHHHHHHHHHCCHHHHHCCC--CCCCCCCHHHHHHHHHHC
T ss_conf 7673--4210054886589---99999999999975703453558--998979879999999869
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.42 E-value=2e-10 Score=92.35 Aligned_cols=325 Identities=13% Similarity=0.105 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHH---H---HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHH--------HCCC
Q ss_conf 2562079999999996598399995723---7---676244468751687525656533123321110--------0012
Q gi|254781097|r 15 GGHVFPAVALSHELKNRGYAVYLITDRR---A---RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLV--------ILWK 80 (369)
Q Consensus 15 GGHi~palala~~L~~~g~~v~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~ 80 (369)
+|.-.++..+.++|.++ |+|++++-.. . ...+.... ...+.++... .. .....+..++ .++.
T Consensus 14 ~G~~ir~~~llk~L~~~-h~V~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~-~~~~~l~~l~~~~p~~~~~~~s 89 (397)
T TIGR03087 14 KGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLC-EEVCVVPLDP-RV-ARLRSLLGLLTGEPLSLPYYRS 89 (397)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHC-CEEEEEECCC-HH-HHHHHHHHHCCCCCCCCHHHCC
T ss_conf 42889999999999828-9389998269866767889998644-4379996784-17-7779998752489872155349
Q ss_pred -CCHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE--ECCCCC--------CHHHHHHH--------HHHHH
Q ss_conf -1101-3555420344424312653210247888623411012--215320--------01567788--------99999
Q gi|254781097|r 81 -AFIA-SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV--HEQNVI--------MGKANRLL--------SWGVQ 140 (369)
Q Consensus 81 -~~~~-~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi--hEqN~v--------~G~~nk~l--------~~~a~ 140 (369)
.+.+ ...++++.++|+|+..... ....+.....++|.++ |.-.+. .+...+++ ..+-.
T Consensus 90 ~~~~~~i~~~~~~~~~D~i~~~~~~--~a~yl~~~~~~~p~ild~hdv~s~~~~~~a~~~~~~~~~~~~~e~~~l~~~E~ 167 (397)
T TIGR03087 90 RRLARWVNALLAAEPVDAIVVFSSA--MAQYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYER 167 (397)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHH--HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999606998689991657--67753445237998999853434899999873454677899999999999999
Q ss_pred HHHCCCC--------CC--CCC-CC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC----HHHH
Q ss_conf 8741343--------22--223-55--667325304443245654333443311447814898630432221----0233
Q gi|254781097|r 141 IIARGLV--------SS--QKK-VL--LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKV----FSDI 203 (369)
Q Consensus 141 ~v~~~~~--------~~--~~~-~~--~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~----ln~~ 203 (369)
.++..|+ +. ... .+ ..++.++.|-|..+++..... .......+.. .+++-||.+-.. +...
T Consensus 168 ~~~~~~d~~~~vS~~d~~~~~~~~~~~~~~i~vipnGvd~~~f~p~~~-~~~~~~~~~~-~i~f~G~~~~~pN~da~~~f 245 (397)
T TIGR03087 168 AIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRD-YPNPYPPGKR-VLVFTGAMDYWPNIDAVVWF 245 (397)
T ss_pred HHHHHCCEEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCC-EEEEEEECCCCCCHHHHHHH
T ss_conf 999966999997799999998747776772776578755123687644-4576678898-79999717872309999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEE--CCCCHH---HHHHHHH
Q ss_conf 34454432320246606776202551677653221001111345444451444300448997--254202---3334552
Q gi|254781097|r 204 VPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLIC--RSGALT---VSEIAVI 278 (369)
Q Consensus 204 v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIs--raG~~T---i~E~~~~ 278 (369)
+.+++..+.+. .+.+.+.. .|....+.++.. .. ..++++.+|++|+..+++.||++|+ +.|+++ +.|++++
T Consensus 246 ~~~v~p~l~~~-~p~~~~~i-vG~~p~~~~~~l-~~-~~~V~~~G~V~d~~~~~~~a~v~v~Pl~~g~G~~~KilEama~ 321 (397)
T TIGR03087 246 AERVFPAVRAR-RPAAEFYI-VGAKPSPAVRAL-AA-LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAM 321 (397)
T ss_pred HHHHHHHHHHH-CCCCEEEE-EECCCCHHHHHH-CC-CCCEEEEEECCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHC
T ss_conf 99999999987-89987999-908962999985-17-9997997654986999961989999465445753579999976
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHH
Q ss_conf 9604875335524898999899999889889980001998999999999861899999999999852783-279999999
Q gi|254781097|r 279 GRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP-QAVLMLSDL 357 (369)
Q Consensus 279 g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~-~aa~~i~~~ 357 (369)
|+|.|.-+ .++++ .- ...|-..++.+ |++.++++|..|++||+.+++|+++++++... ..=++++..
T Consensus 322 g~PvVst~--~g~eg------l~-~~~g~~~lia~---~~~~fa~~i~~Ll~d~~~~~~l~~~~r~~v~~~ysW~~~~~~ 389 (397)
T TIGR03087 322 AKPVVASP--EAAEG------ID-ALPGAELLVAA---DPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLAR 389 (397)
T ss_pred CCCEEECC--CCCCC------CC-CCCCCEEEECC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99899777--43024------43-67897059579---999999999999819999999999999999982999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254781097|r 358 VEKLAH 363 (369)
Q Consensus 358 i~~la~ 363 (369)
++++-+
T Consensus 390 le~~~~ 395 (397)
T TIGR03087 390 LDALLE 395 (397)
T ss_pred HHHHHC
T ss_conf 999864
No 61
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.41 E-value=2.8e-10 Score=91.38 Aligned_cols=311 Identities=16% Similarity=0.058 Sum_probs=151.0
Q ss_pred EEEEECCC--------CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 69998788--------5256207999999999659839999572376762444687516875256565331233211100
Q gi|254781097|r 6 VILLVAGG--------TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 6 ~ili~~gG--------TGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
||++.+-. .||=-.-+..|+++|.++||+|++++..+..... ...... ........ ......
T Consensus 2 kI~~v~~~~~p~pP~~~GG~e~~~~~La~~L~~~Gh~V~v~~~~~~~~~~---~~~~~~---~~~~~~~~----~~~~~~ 71 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA---PLVPVV---PEPLRLDA----PGRDRA 71 (335)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCCCCC---CCCCCCCC----CCCCHH
T ss_conf 86998884003699998979999999999999769989999628987788---500456---76654454----422124
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH-HHH--HHHCCCCCCCCCCC
Q ss_conf 012110135554203444243126532102478886234110122153200156778899-999--87413432222355
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSW-GVQ--IIARGLVSSQKKVL 154 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~-~a~--~v~~~~~~~~~~~~ 154 (369)
.+.......+.+++.+||+|.+.+. .+...++...++|++.+-.........+.... ... .++++-.......+
T Consensus 72 ~~~~~~~~~~~~~~~~~Dvvh~~~~---~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~i~vS~~~~~~~~~ 148 (335)
T cd03802 72 EAEALALAERALAAGDFDIVHNHSL---HLPLPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPP 148 (335)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCC
T ss_conf 5689999999997579858998971---7899998627997899989997067799997523586899945999954577
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 66732530444324565433344331144781489863043222102333445443232024660677620255167765
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQ 234 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~ 234 (369)
..++.++-|+|..+.+.. ..+....++.+|--.-.+.+.. +++.+.. .+..+.|+ ++..+.+...
T Consensus 149 ~~~~~vI~ngvd~~~f~~--------~~~~~~~~l~vGRl~~~KG~~~----li~a~~~-~~~~L~i~--G~~~~~~~~~ 213 (335)
T cd03802 149 LPWVATVHNGIDLDDYPF--------RGPKGDYLLFLGRISPEKGPHL----AIRAARR-AGIPLKLA--GPVSDPDYFY 213 (335)
T ss_pred CCCEEEECCCCCHHHCCC--------CCCCCCEEEEEEECCCCCCHHH----HHHHHHH-CCCEEEEE--ECCCCHHHHH
T ss_conf 677799879988876798--------8899978999993363347699----9999874-59808999--4767379999
Q ss_pred HHH---HHCCCCCCCCCCCC--CCHHHHHCCCEEE--EC-C-C-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 322---10011113454444--5144430044899--72-5-4-202333455296048753355248989998999998
Q gi|254781097|r 235 KQY---DELGCKATLACFFK--DIERYIVEANLLI--CR-S-G-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE 304 (369)
Q Consensus 235 ~~~---~~~~~~~~v~~f~~--~m~~~~~~aDlvI--sr-a-G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~ 304 (369)
... .....++++.++++ ++.++|+.||+++ |+ . | +.++.|++++|+|.|.-.. ++ ..+.+.+
T Consensus 214 ~~~~~~~~~~~~V~f~G~v~~~~~~~~~~~a~~~v~pS~~~E~fglv~lEAma~G~PVVat~~----gG----~~E~v~~ 285 (335)
T cd03802 214 REIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GA----VPEVVED 285 (335)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCC----CC----HHHHHCC
T ss_conf 999996178995899504683999999997412456765324674799999984998999289----98----1454238
Q ss_pred CCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 898899800019989999999998618999999999998527832799999999999
Q gi|254781097|r 305 GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 305 ~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
...|++++ +.+.|++++.++...+ .+.+++.+++. .+.+++++..+++
T Consensus 286 g~~G~lv~----~~~~la~ai~~~~~~~--~~~~r~~~~~~---fs~~~~~~~~~~~ 333 (335)
T cd03802 286 GVTGFLVD----SVEELAAAVARADRLD--RAACRRRAERR---FSAARMVDDYLAL 333 (335)
T ss_pred CCEEEECC----CHHHHHHHHHHHHHCC--HHHHHHHHHHH---CCHHHHHHHHHHH
T ss_conf 96189819----9999999999875289--99999999986---8999999999997
No 62
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=5.4e-08 Score=75.38 Aligned_cols=320 Identities=15% Similarity=0.164 Sum_probs=175.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEE--EEEE-CHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 7699987885256207999999999659839--9995-723767624446875168752565653312332111000121
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAV--YLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
.-|-|-|..- |-+..++.|.++|+++-+++ .+.+ ..++............... -.++ . .
T Consensus 50 p~vWiHaaSV-GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~-YlP~------D----------~ 111 (419)
T COG1519 50 PLVWIHAASV-GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQ-YLPL------D----------L 111 (419)
T ss_pred CEEEEEECCH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEE-ECCC------C----------C
T ss_conf 8079996446-6788889999999976899878999527637999998769870899-6576------7----------6
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEEECCCCCCH-HH-HH--HHHHHHHHHHCCCCCC-------
Q ss_conf 1013555420344424312653210247-88862341101221532001-56-77--8899999874134322-------
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMVHEQNVIMG-KA-NR--LLSWGVQIIARGLVSS------- 149 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vihEqN~v~G-~~-nk--~l~~~a~~v~~~~~~~------- 149 (369)
-....++++.++||++|-+-+- .-|.. ..++..++|+++- |+.++ ++ .+ .++++.+.++..+...
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtE-lWPnli~e~~~~~~p~~Lv--NaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D 188 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETE-LWPNLINELKRRGIPLVLV--NARLSDRSFARYAKLKFLARLLFKNIDLILAQSEED 188 (419)
T ss_pred HHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHCCCCEEEE--EEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf 6889999974289879998001-3678999998769989999--423023257779877899999997423334548888
Q ss_pred CC---CCCCCCCEEEECCC---CHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 22---35566732530444---324565433344331144781489863043-222102333445443232024660677
Q gi|254781097|r 150 QK---KVLLRKIIVTGNPI---RSSLIKMKDIPYQSSDLDQPFHLLVFGGSQ-GAKVFSDIVPKSIALIPEMQRKRLVIM 222 (369)
Q Consensus 150 ~~---~~~~~k~~~~G~Pv---R~~~~~~~~~~~~~~~~~~~~~ILv~GGS~-Ga~~ln~~v~~~~~~l~~~~~~~~~v~ 222 (369)
.+ .+-..++.++||.= .+.-.........+...+.+..+.|.+++- |- .+.+.++...+.+.. .+..++
T Consensus 189 ~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GE---eei~l~~~~~l~~~~-~~~llI 264 (419)
T COG1519 189 AQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGE---EEIILDAHQALKKQF-PNLLLI 264 (419)
T ss_pred HHHHHHCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCH---HHHHHHHHHHHHHHC-CCCEEE
T ss_conf 9999964986138633324237787324899999998508888559995477863---889999999999638-995699
Q ss_pred EEECCCCHHHHHH---HHHHCCCCCC---------------CCCCCCCCHHHHHCCCEEEE------CCCCHHHHHHHHH
Q ss_conf 6202551677653---2210011113---------------45444451444300448997------2542023334552
Q gi|254781097|r 223 QQVREDDKEKVQK---QYDELGCKAT---------------LACFFKDIERYIVEANLLIC------RSGALTVSEIAVI 278 (369)
Q Consensus 223 ~~~g~~~~~~~~~---~~~~~~~~~~---------------v~~f~~~m~~~~~~aDlvIs------raG~~Ti~E~~~~ 278 (369)
.+ +++.++.+. .....+..+. +..-.-+|..+|..||+++- .+|++-+ |.+++
T Consensus 265 lV--PRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~L-Epa~~ 341 (419)
T COG1519 265 LV--PRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPL-EPAAF 341 (419)
T ss_pred EE--CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCHH-HHHHC
T ss_conf 91--5875567999999997598188613789998888689996286899997343279987744677898822-37870
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--HHHHHHHH
Q ss_conf 9604875335524898999899999889889980001998999999999861899999999999852783--27999999
Q gi|254781097|r 279 GRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP--QAVLMLSD 356 (369)
Q Consensus 279 g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~--~aa~~i~~ 356 (369)
++|.|+=|+-+ | |..-++.+.+.|+++.+++ .+.+.+.+..++.|++.+++|.+++..+-.. .|.+++.+
T Consensus 342 ~~pvi~Gp~~~---N-f~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~ 413 (419)
T COG1519 342 GTPVIFGPYTF---N-FSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLE 413 (419)
T ss_pred CCCEEECCCCC---C-HHHHHHHHHHCCCEEEECC----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89788777513---5-8999999986698699778----89999999997078899999999899999986779999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781097|r 357 LVEK 360 (369)
Q Consensus 357 ~i~~ 360 (369)
.+..
T Consensus 414 ~l~~ 417 (419)
T COG1519 414 ALKP 417 (419)
T ss_pred HHHH
T ss_conf 7551
No 63
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.26 E-value=1.1e-08 Score=80.30 Aligned_cols=323 Identities=19% Similarity=0.167 Sum_probs=168.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 69998788525620799999999965983999957237-67624446875168752565653312332111000121101
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
||.|-.+-+ -|+-=...+..+|+++||+|.+.+-..+ -..+.+..++.+..+-.. .+......+. .. ......
T Consensus 2 kVwiDI~n~-~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~--g~~tl~~Kl~--~~-~eR~~~ 75 (346)
T COG1817 2 KVWIDIGNP-PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKH--GGVTLKEKLL--ES-AERVYK 75 (346)
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCEEEECCC--CCCCHHHHHH--HH-HHHHHH
T ss_conf 379975896-10238999999998578499999851275889999839970764045--7744789999--99-999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC--CCCCC-CCCCCCCCEEE
Q ss_conf 3555420344424312653210247888623411012215320015677889999987413--43222-23556673253
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARG--LVSSQ-KKVLLRKIIVT 161 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~--~~~~~-~~~~~~k~~~~ 161 (369)
..+++.+++||+.++. +|.++--.|+.+++|.++.-.|--.--.||+..++|+.++.. +++.. ..+-.+...++
T Consensus 76 L~ki~~~~kpdv~i~~---~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~ 152 (346)
T COG1817 76 LSKIIAEFKPDVAIGK---HSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGADPNKIS 152 (346)
T ss_pred HHHHHHHCCCCEEEEC---CCCCHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHCCCCCCEE
T ss_conf 9998752298557522---7810556776528863896487547778630002442150643443577887088955211
Q ss_pred EC-------CCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCHHH-----HHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 04-------4432456543334433114478-14898630432221023-----33445443232024660677620255
Q gi|254781097|r 162 GN-------PIRSSLIKMKDIPYQSSDLDQP-FHLLVFGGSQGAKVFSD-----IVPKSIALIPEMQRKRLVIMQQVRED 228 (369)
Q Consensus 162 G~-------PvR~~~~~~~~~~~~~~~~~~~-~~ILv~GGS~Ga~~ln~-----~v~~~~~~l~~~~~~~~~v~~~~g~~ 228 (369)
|. |+-. +...+...+..+.... ..|+.=-=|.||...|. .+++.++.+.+.. ++++ ....
T Consensus 153 ~~~giae~~~v~~--f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~i--pr~~ 225 (346)
T COG1817 153 GYNGIAELANVYG--FVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLI--PREK 225 (346)
T ss_pred CCCCEEEEEECCC--CCCCHHHHHHCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCC---EEEE--CCCH
T ss_conf 3566267731026--7988789987588879866999643445423433222566888999887572---8995--5755
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 16776532210011113454444514443004489972542023334552960487533552489899989999988988
Q gi|254781097|r 229 DKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGA 308 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a 308 (369)
...++-+.|. |+.+..=..|--+++-.||++|+ +||+.-.|++.+|+|+|.. ||.- -..--+++.+.|.-
T Consensus 226 ~~~eife~~~----n~i~pk~~vD~l~Llyya~lvig-~ggTMarEaAlLGtpaIs~-~pGk----ll~vdk~lie~G~~ 295 (346)
T COG1817 226 EQAEIFEGYR----NIIIPKKAVDTLSLLYYATLVIG-AGGTMAREAALLGTPAISC-YPGK----LLAVDKYLIEKGLL 295 (346)
T ss_pred HHHHHHHHHC----CCCCCCCCCCHHHHHHHHHEEEC-CCCHHHHHHHHHCCCEEEE-CCCC----CCCCCHHHHHCCCE
T ss_conf 6899874101----10588555227878865415641-7703788888728834785-3885----33223898866843
Q ss_pred EEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9980001998999999999861899999999999852783279999999999998
Q gi|254781097|r 309 KVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 309 ~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~ 363 (369)
..-. ++....+.+.+++.++.. ++ ....++ .+-.+.|.+.++++..
T Consensus 296 ~~s~----~~~~~~~~a~~~l~~~~~-kK--~~~~k~--e~~~~~ii~~ve~~~e 341 (346)
T COG1817 296 YHST----DEIAIVEYAVRNLKYRRL-KK--TGVLKL--EDPTRLIIDVVEEMLE 341 (346)
T ss_pred EECC----CHHHHHHHHHHHHHCHHH-CC--CCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 4317----888999999998425000-23--344220--0379999999999864
No 64
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=1.4e-09 Score=86.43 Aligned_cols=241 Identities=17% Similarity=0.176 Sum_probs=136.4
Q ss_pred CCCCCHHHHHHHHHCCCCCEEECCCCCC--------------H-----------HHHHHHHHHHHHHHCCCCCCC-----
Q ss_conf 6532102478886234110122153200--------------1-----------567788999998741343222-----
Q gi|254781097|r 101 GGYHSISPLLAGMILRIPSMVHEQNVIM--------------G-----------KANRLLSWGVQIIARGLVSSQ----- 150 (369)
Q Consensus 101 GGy~s~P~~iaA~~l~iP~vihEqN~v~--------------G-----------~~nk~l~~~a~~v~~~~~~~~----- 150 (369)
.||++++++++....+.|++|-|-..+. . ...++.+..||.|...|+.+.
T Consensus 182 tGyAgllg~l~~~~~g~P~llTEHGIYtRER~i~l~~a~w~~~~~r~~wi~ff~~l~~~~Y~~Ad~I~~l~~~nr~~qi~ 261 (475)
T cd03813 182 TGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTLYEGNRERQIE 261 (475)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHH
T ss_conf 53778999999887589879850672289999888647543589999999999999999998517000134244899998
Q ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-C
Q ss_conf 235566732530444324565433344331144781489863043222102333445443232024660677620255-1
Q gi|254781097|r 151 KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRED-D 229 (369)
Q Consensus 151 ~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~-~ 229 (369)
-+.+.+|+.++-|=|.-+-+.. .... ...+.+.+|..+|==.=.+.+. ++.+++..+.+. .++..+...++.. +
T Consensus 262 ~Ga~~~k~~vIpNGId~~~F~~--~~~~-~~~~~~~~v~~vgRv~p~Kdi~-tlI~A~~~v~~~-~p~~rl~I~Gp~d~~ 336 (475)
T cd03813 262 DGADPEKIRVIPNGIDPERFAP--ARRA-RPEKEPPVVGLIGRVVPIKDIK-TFIRAAAIVRKK-IPDAEGWVIGPTDED 336 (475)
T ss_pred HCCCHHHCEECCCCCCHHHCCC--CCCC-CCCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHHH-CCCEEEEEECCCCCC
T ss_conf 1989999441179832988488--7656-6678998899997011166999-999999999986-898399997799888
Q ss_pred H---HHHHHHHHHC--CCCCCCCCCCCCCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 6---7765322100--111134544445144430044899725----420233345529604875335524898999899
Q gi|254781097|r 230 K---EKVQKQYDEL--GCKATLACFFKDIERYIVEANLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300 (369)
Q Consensus 230 ~---~~~~~~~~~~--~~~~~v~~f~~~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~ 300 (369)
. .+.+....+. ..++.+.++. |+.++|.++|+++--| =..++.|++++|+|.|.-- .++- .+
T Consensus 337 ~~y~~ec~~lv~~lgL~~~V~F~G~~-dv~~~l~~~Dv~vl~S~~Eg~plvllEAmA~G~PvVaTd----VGg~----~e 407 (475)
T cd03813 337 PEYAEECRELVESLGLEDNVKFTGFQ-NVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATD----VGSC----RE 407 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCC-CHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCEEECC----CCCC----HH
T ss_conf 58999999999982998727983878-989999857999965733467579999997699889726----9981----88
Q ss_pred HHHH------CCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHH
Q ss_conf 9998------89889980001998999999999861899999999999852783-279999999
Q gi|254781097|r 301 YLQE------GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP-QAVLMLSDL 357 (369)
Q Consensus 301 ~l~~------~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~-~aa~~i~~~ 357 (369)
.+.+ -.+|++++.. +++.|++++.+|++||+.+++|++++++.... ...+++++-
T Consensus 408 ~v~~~~~~~~G~~G~lvp~~--d~~~LA~ai~~Ll~d~~~r~~~g~~ar~rv~~~f~~e~m~~~ 469 (475)
T cd03813 408 LIEGADDEALGPAGEVVPPA--DPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDS 469 (475)
T ss_pred HHCCCCCCCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 75386656778854896999--999999999999739999999999999999996899999999
No 65
>pfam00534 Glycos_transf_1 Glycosyl transferases group 1. Mutations in this domain of subunit A of phosphatidylinositol N-acetylglucosaminyltransferase lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.
Probab=99.17 E-value=1.1e-09 Score=87.29 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=107.7
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH--CCCCCCCCCCCC-
Q ss_conf 34433114478148986304322210233344544323202466067762025516776532210--011113454444-
Q gi|254781097|r 175 IPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDE--LGCKATLACFFK- 251 (369)
Q Consensus 175 ~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~--~~~~~~v~~f~~- 251 (369)
..+...+.+....++++-|+.....=-+.+.++++.+.+.....+.++..+.......+...... ...++.+.+|.+
T Consensus 4 ~~r~~~~i~~~~~vi~~~G~~~~~Kg~~~~i~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T pfam00534 4 EERKKLGIPEDKPIILFVGRLVPEKGLDLLLEAFALLKEQLHPNLKLVIVGDGEEEKKLKKLALKLGLEDNVIFVGFVPR 83 (172)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCH
T ss_conf 99998799999959999654855449899999899888740898599998378326789999998399986899578898
Q ss_pred -CCHHHHHCCCEEEEC----CCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHH
Q ss_conf -514443004489972----542023334552960487533552489899989999988988998000199899999999
Q gi|254781097|r 252 -DIERYIVEANLLICR----SGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELC 326 (369)
Q Consensus 252 -~m~~~~~~aDlvIsr----aG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~ 326 (369)
++.++|+.||+.|+- +.+.++.|++++|+|.|.-..+. ..+.+.+...|++++.. +++.++++|.
T Consensus 84 ~~~~~~l~~sdi~i~ps~~E~~~~~~~Eam~~G~pvI~s~~~~--------~~eii~~~~~G~~~~~~--~~~~l~~~i~ 153 (172)
T pfam00534 84 EDLIELYRIADLFVLPSRYEGFGLVLLEAMAAGVPVIASDVGG--------PAEIVKDGETGLLVDPG--DAEALAEAIE 153 (172)
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHCCCEEEEECCCC--------HHHHHHCCCEEEEECCC--CHHHHHHHHH
T ss_conf 9999999972410477366515711899996797199956997--------29997189839997899--9999999999
Q ss_pred HHHCCHHHHHHHHHHHHH
Q ss_conf 986189999999999985
Q gi|254781097|r 327 SAMKKPSCLVQMAKQVSM 344 (369)
Q Consensus 327 ~ll~d~~~l~~m~~~~~~ 344 (369)
.+++||+.+++|++|+++
T Consensus 154 ~li~n~~~~~~m~~n~~~ 171 (172)
T pfam00534 154 KLLKDEELRERLGENARK 171 (172)
T ss_pred HHHCCHHHHHHHHHHHCC
T ss_conf 998799999999998448
No 66
>KOG3349 consensus
Probab=99.15 E-value=4.5e-10 Score=89.94 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=88.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHH-----HHHHHHHCCCCCEEEEEECCCCH---HHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 1489863043222102333445-----44323202466067762025516---776532210011113454444514443
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKS-----IALIPEMQRKRLVIMQQVREDDK---EKVQKQYDELGCKATLACFFKDIERYI 257 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~-----~~~l~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~~~~~~v~~f~~~m~~~~ 257 (369)
..++|+-|| ..|...+..+ +..+...+- -+++.|.|++.. +.....-..-+..+..+.|.+.|.+.|
T Consensus 4 ~~vFVTVGt---T~Fd~LI~~Vl~~~~~~~L~k~G~--~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349 4 MTVFVTVGT---TSFDDLISCVLSEEFLQELQKRGF--TKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEEECC---CCHHHHHHHHCCHHHHHHHHHCCC--CEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCCHHHHH
T ss_conf 379999566---538999999738999999997396--389987358864789877750124875898773384178887
Q ss_pred HCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHC
Q ss_conf 0044899725420233345529604875335524898999899999889889980001
Q gi|254781097|r 258 VEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENF 315 (369)
Q Consensus 258 ~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~ 315 (369)
+.||+||+|||++|+.|.+..|+|.|.|+.-.-.||||.+-|+-|++.|+-+.+...+
T Consensus 79 ~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349 79 RSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHCCEEEECCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 5345887458742099999749977999275764448999999998659689960565
No 67
>TIGR00661 MJ1255 conserved hypothetical protein; InterPro: IPR005262 The function of this domain is unknown. A small region (~50 amino acids) within the domain appears to be related to a family of sugar transferases. .
Probab=99.08 E-value=3e-09 Score=84.14 Aligned_cols=290 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred EEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHCCCCCCCEEEEECCCCCCCC----HHHH-HHHHH--
Q ss_conf 6999878852-562079999999996598399995723-7676244468751687525656533----1233-21110--
Q gi|254781097|r 6 VILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRR-ARSFITDFPADSIYEIVSSQVRFSN----PFVF-WNSLV-- 76 (369)
Q Consensus 6 ~ili~~gGTG-GHi~palala~~L~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~l~-- 76 (369)
++++...|+| ||..++.++.+.++++.+++.++..++ ...++...-...+...........+ .... +....
T Consensus 1 ~~~~~~~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T TIGR00661 1 KILYGVCGEGFGHAARSGAIGDALKEQDYEVDYLASGRPAENYLSKEGFGDFETFPGLNLAGEDGKVNDVKTFLRKKELL 80 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCHHHHHCCCEEECCCCCCHHHHHHHHHHCCC
T ss_conf 90342025774303567777876420111044553275124455543000122211311201566402577777640245
Q ss_pred --HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEC------CCCCC--HH--HHHHHH--------
Q ss_conf --00121101355542034442431265321024788862341101221------53200--15--677889--------
Q gi|254781097|r 77 --ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHE------QNVIM--GK--ANRLLS-------- 136 (369)
Q Consensus 77 --~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihE------qN~v~--G~--~nk~l~-------- 136 (369)
.+...++...++++..+||++++.- .+-...++.++++|++--. ||... -. ...|..
T Consensus 81 p~~~~~~~~~~~~~~~~~~~d~~~~d~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (353)
T TIGR00661 81 PRDLKENLRLEVKILRDFGPDLILSDF---EPYTAVAAKLLKIPLIGISNLHVINQNYFLYPLPLKGDKWPDEAVLRHFA 157 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECC---HHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 035899999988877641774254032---04678887764043000032012111012111011134556788888764
Q ss_pred HHHHHHHC-CCCCCCCCCCC--C---CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99998741-34322223556--6---732530444324565433344331144781489863043222102333445443
Q gi|254781097|r 137 WGVQIIAR-GLVSSQKKVLL--R---KIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIAL 210 (369)
Q Consensus 137 ~~a~~v~~-~~~~~~~~~~~--~---k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~ 210 (369)
........ .|.......+. + ...++|+.+|.++.+. ........+...+|++. +..+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~~~~~~~~~~~~~g~~~----~~~~~~~~~~ 226 (353)
T TIGR00661 158 PRPERLLLPWYPFPEPILPYNLPIIKAPEFIGPLLRYDVDDL-------DPYGGDYILVYLGGFEN----NNKLLELLGK 226 (353)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCCCCCEEEEEECCCHH----HHHHHHHHHH
T ss_conf 323453023212321024211102310145445666544310-------01246447897356213----6899998875
Q ss_pred HHHHCCCCCEEEEEECCCCHHH-HHH--HHHHC-CCCCCCCCCCC-CCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 2320246606776202551677-653--22100-11113454444-5144430044899725420233345529604875
Q gi|254781097|r 211 IPEMQRKRLVIMQQVREDDKEK-VQK--QYDEL-GCKATLACFFK-DIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 211 l~~~~~~~~~v~~~~g~~~~~~-~~~--~~~~~-~~~~~v~~f~~-~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
+.-. .++.+-..|+.-+... +.. ..... ..++.+..+.. ++...+..+..+++++|..+++|++++|.|.+.+
T Consensus 227 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 304 (353)
T TIGR00661 227 IDLK--NNLNVKFVCYGPEVPGKLLRDLNLNELKDENVELRRLNEGDFKEDLENAAGVITNGGFSLPSEALALGKPLLVV 304 (353)
T ss_pred HHHH--CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEE
T ss_conf 4320--25613788605421346764213100135642588603125788775543311157502356676515641341
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEEH
Q ss_conf 3355248989998999998898899800
Q gi|254781097|r 286 PYPHSVDQDQLHNAYYLQEGGGAKVITE 313 (369)
Q Consensus 286 P~p~a~~~hQ~~NA~~l~~~G~a~~i~~ 313 (369)
|.. ..-+|..||..+++.|++.....
T Consensus 305 p~~--~~~~~~~~~~~~~~~g~~~~~~~ 330 (353)
T TIGR00661 305 PLL--GQFEQGLNAVKLEDLGLGEALEF 330 (353)
T ss_pred CCC--CCHHHHCCHHHHHHHCHHHHHHH
T ss_conf 144--42012101011122010345655
No 68
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.04 E-value=9.8e-09 Score=80.58 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=105.1
Q ss_pred CCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHCC
Q ss_conf 78148986304322-2102333445443232024660677620255167765322100--11113454444514443004
Q gi|254781097|r 184 QPFHLLVFGGSQGA-KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL--GCKATLACFFKDIERYIVEA 260 (369)
Q Consensus 184 ~~~~ILv~GGS~Ga-~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~--~~~~~v~~f~~~m~~~~~~a 260 (369)
.+..|+.+| =+-. +.+.. +.+++..+.+. .+.+.+...+.....+.+++...+. ..++.+.+|++|+.++++.|
T Consensus 203 ~~~~ii~vg-RL~~eK~~d~-LI~A~~~v~~~-~P~~~L~I~G~G~~~~~L~~~i~~l~l~~~V~f~G~~~~~~~~y~~a 279 (372)
T cd04949 203 KPHKIITVA-RLAPEKQLDQ-LIKAFAKVVKQ-VPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKA 279 (372)
T ss_pred CCCEEEEEE-CCCCCCCHHH-HHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC
T ss_conf 989799996-7774028599-99999999987-89929999973477899999999829998799889988989999757
Q ss_pred CEEEECC----CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 4899725----420233345529604875335524898999899999889889980001998999999999861899999
Q gi|254781097|r 261 NLLICRS----GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLV 336 (369)
Q Consensus 261 DlvIsra----G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~ 336 (369)
|+.+.-| -+.++.|++++|+|+|.--.+++ +.+.+.+.--|++++.. +.+.|+++|..+++||+.++
T Consensus 280 ~~~v~~S~~EGfgl~llEAma~GlPvIa~d~~yG-------~~eiI~~g~nG~Lv~~~--d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 280 QLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG-------PSEIIEDGENGYLVPKG--DIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred CEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCC-------CHHHHCCCCCEEEECCC--CHHHHHHHHHHHHCCHHHHH
T ss_conf 9999802003676589999985999998059999-------68884589847996899--99999999999986999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999985278327999999
Q gi|254781097|r 337 QMAKQVSMKGKPQAVLMLSD 356 (369)
Q Consensus 337 ~m~~~~~~~~~~~aa~~i~~ 356 (369)
+|++++.+.+...+.+.|++
T Consensus 351 ~~s~~a~~~a~~fs~~~i~~ 370 (372)
T cd04949 351 KFSEAAYENAERYSEENVWE 370 (372)
T ss_pred HHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999559899994
No 69
>PRK10125 predicted glycosyl transferase; Provisional
Probab=99.02 E-value=1.1e-06 Score=66.31 Aligned_cols=329 Identities=12% Similarity=0.098 Sum_probs=149.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCCCCCCEEEEECCCCCCCCHH--HHHHHHHH-CC
Q ss_conf 6999878-8525620799999999965983999957237--67624446875168752565653312--33211100-01
Q gi|254781097|r 6 VILLVAG-GTGGHVFPAVALSHELKNRGYAVYLITDRRA--RSFITDFPADSIYEIVSSQVRFSNPF--VFWNSLVI-LW 79 (369)
Q Consensus 6 ~ili~~g-GTGGHi~palala~~L~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~ 79 (369)
.+.|.+. ++||--..|.-|.++|.+.|+++.+....+. .......... ..+.... +..... ...+.... .+
T Consensus 3 VL~INts~~~GGAaraA~rLh~~L~~~G~~s~mlv~~~~~~~~~v~~~~~~--~~~~~~~-~~~~~~~~~~~r~~~~~~~ 79 (405)
T PRK10125 3 ILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYP--QVIKHTP-RMTAMANIALFRLFNRDLF 79 (405)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC--CEEECCC-HHHHHHHHHHHHCCCCCCC
T ss_conf 999973669882999999999999857996699997357898511357766--2021240-4677765778761363224
Q ss_pred CCCHHH-HHHHHHCCCCEEEE---CCCCCCHHHHHHH------HHCCCCCE--EECCCCC--------------------
Q ss_conf 211013-55542034442431---2653210247888------62341101--2215320--------------------
Q gi|254781097|r 80 KAFIAS-LRLIKKLKPNVVVG---FGGYHSISPLLAG------MILRIPSM--VHEQNVI-------------------- 127 (369)
Q Consensus 80 ~~~~~~-~~ii~~~kPDvVi~---tGGy~s~P~~iaA------~~l~iP~v--ihEqN~v-------------------- 127 (369)
.+.... ..+.+..+||+|=. =|+|..+..++.- ...++|+| +|.-...
T Consensus 80 ~~~~~~~~~i~~~~~pDIihLH~ih~~~ln~~~l~~~~~~~ki~k~~kPvVWTLHDmW~fTG~Chy~~~C~~wk~gC~~C 159 (405)
T PRK10125 80 GNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKC 159 (405)
T ss_pred CCCHHHHHHHHCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 56267888762157898899740254543099998786554430479978999436765567778878437676255656
Q ss_pred ------CH----HHHHHHHHHHHHH---------HCC---CCC-C-CCCCCCCCCEEEECCCCHHHHHHH-HHHHHHHCC
Q ss_conf ------01----5677889999987---------413---432-2-223556673253044432456543-334433114
Q gi|254781097|r 128 ------MG----KANRLLSWGVQII---------ARG---LVS-S-QKKVLLRKIIVTGNPIRSSLIKMK-DIPYQSSDL 182 (369)
Q Consensus 128 ------~G----~~nk~l~~~a~~v---------~~~---~~~-~-~~~~~~~k~~~~G~PvR~~~~~~~-~~~~~~~~~ 182 (369)
|. ++.+.+.+.-+.+ +++ .+. . ...+...++.++.|||........ .....+. .
T Consensus 160 P~L~~yp~~~~D~s~~~~~~K~~~~~~~~~~~~~~V~ps~~~~~~~~sl~~~~~v~vIpNgID~~~~~~~~~~~~~~~-~ 238 (405)
T PRK10125 160 PTLNNYPPVRVDRAHQLVAGKRQLFREMLRLGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILAELPPVRE-T 238 (405)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCC-C
T ss_conf 445678853357489999999999875352177199788999999875617998678389978543444304554043-7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHC
Q ss_conf 478148986304322210233344544323202466067762025516776532210011113454444---51444300
Q gi|254781097|r 183 DQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFK---DIERYIVE 259 (369)
Q Consensus 183 ~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~---~m~~~~~~ 259 (369)
.+++.+++. ..+...........+..+.... ..+.++. -|.... ....++.-.+|+. .|.++|++
T Consensus 239 ~~~~~i~~~--a~~~~~~~k~~~~ll~~l~~l~-~~~~l~~-~G~~~~--------~~~~~v~~lg~~~d~~~La~~Ysa 306 (405)
T PRK10125 239 QGKPRIAVV--AHDLRYDGKTDQQLVREMMALG-DKIELHT-FGKFSP--------FTAGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred CCCCEEEEE--ECCCCCCCHHHHHHHHHHHHCC-CCEEEEE-EECCCC--------CCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 899769999--5454456333899999998448-9708999-725764--------468874646875899999999963
Q ss_pred CCEEEECCC----CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHH
Q ss_conf 448997254----2023334552960487533552489899989999988988998000199899999999986189999
Q gi|254781097|r 260 ANLLICRSG----ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCL 335 (369)
Q Consensus 260 aDlvIsraG----~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l 335 (369)
||+.|.-+= +.|+.|+++||+|.|.- . +++ -.+.+.+. .|.++++. +.+.|++.+...+.++.+.
T Consensus 307 Ad~~v~ps~~e~~~~~~~Ea~acg~pvv~~--~--~~g----~~~~~~~~-~g~~~~~~--d~~~la~~i~~~~~~~~~~ 375 (405)
T PRK10125 307 MDALVFSSRVDNYPLILCEALSIGVPVIAT--H--SDA----AREVLQKS-GGKTVSEE--EVLQLAQLSKPEIAQAVFG 375 (405)
T ss_pred CCEEEECCHHHCCCHHHHHHHHCCCCEEEE--C--CCC----CHHHEECC-CCEEECCC--CHHHHHHHHHHHHHCCHHH
T ss_conf 788972746754650899999749988983--5--999----73651158-74596688--9999999899998460467
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999998527832799999999999
Q gi|254781097|r 336 VQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 336 ~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
..+.++.++.....+.+.+++.-.++
T Consensus 376 ~~~~~~~~~~~~~fs~~~~a~~Y~~l 401 (405)
T PRK10125 376 TTLAEFSQRSRAAYSGQQMLEEYVNF 401 (405)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 78999999999867999999999999
No 70
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.96 E-value=1.3e-06 Score=65.69 Aligned_cols=322 Identities=15% Similarity=0.083 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 256207999999999659839999572376762444-6875168752565653312332111000121101355542034
Q gi|254781097|r 15 GGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF-PADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLK 93 (369)
Q Consensus 15 GGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~k 93 (369)
||=-.-..++.+.+++.|+++.+.+......+.... ..... +...+.... ......+.-+ ....+.+......
T Consensus 12 GGVa~~l~~Lv~~~~~lGv~~~w~V~~~~~~ff~~tk~~hn~--Lqg~~~~ls---~~~~~~y~~~-~~~na~~~~~~~~ 85 (372)
T cd03792 12 GGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNA--LQGADIELS---EEEKEIYLEW-NEENAERPLLDLD 85 (372)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHH--HCCCCCCCC---HHHHHHHHHH-HHHHHHCCCCCCC
T ss_conf 769999999999999669816999945983578988750065--419997679---8899999999-9998731310279
Q ss_pred CCEEEECCCCCCH-HHHHHH--HHCCCCCEE--ECCCCCC-HHHHHHHHHHHHHHHC---CCCCC-CCCCCCCCCEEEEC
Q ss_conf 4424312653210-247888--623411012--2153200-1567788999998741---34322-22355667325304
Q gi|254781097|r 94 PNVVVGFGGYHSI-SPLLAG--MILRIPSMV--HEQNVIM-GKANRLLSWGVQIIAR---GLVSS-QKKVLLRKIIVTGN 163 (369)
Q Consensus 94 PDvVi~tGGy~s~-P~~iaA--~~l~iP~vi--hEqN~v~-G~~nk~l~~~a~~v~~---~~~~~-~~~~~~~k~~~~G~ 163 (369)
.|+|+- +.. |..+.. ...+.|++. |-+=+.+ .++-.|+.++...+-. +.++. .+..+. +..++.+
T Consensus 86 ~DvV~i----Hdpqp~~l~~~~~~~~~~~I~r~Hid~~~~~~~~w~fl~~~i~~~d~~V~~~~~~~~~~~~~-~~~~ip~ 160 (372)
T cd03792 86 ADVVVI----HDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPEYVPPQVPP-RKVIIPP 160 (372)
T ss_pred CCEEEE----CCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHCCCCCC-CEEEECC
T ss_conf 998998----79366789998636899589996886688538899999999985799999735750436887-6478167
Q ss_pred CCCH------HHHHHH-HHHHHHHCCC-CCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCEE-EEEECCCC-H--
Q ss_conf 4432------456543-3344331144-7814898630432-2210233344544323202466067-76202551-6--
Q gi|254781097|r 164 PIRS------SLIKMK-DIPYQSSDLD-QPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQRKRLVI-MQQVREDD-K-- 230 (369)
Q Consensus 164 PvR~------~~~~~~-~~~~~~~~~~-~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~~~~~v-~~~~g~~~-~-- 230 (369)
-|.+ ++.... ....++.+.+ +.+.|+..| -+- .+.+ ..+.+++..+.+.. +..++ +.+.|..+ .
T Consensus 161 ~IDpl~~kn~~l~~~~~~~~~~~~gi~~d~piIl~Vg-Rl~~~Kg~-~~li~A~~~~~~~~-~d~~LvivG~g~~ddpe~ 237 (372)
T cd03792 161 SIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVS-RFDPWKDP-FGVIDAYRKVKERV-PDPQLVLVGSGATDDPEG 237 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-ECCCCCCH-HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHH
T ss_conf 1066774345589899999999829898995899987-25654686-99999999999768-997899989987778147
Q ss_pred ----HHHHHHHHHCCCCCCCC--CCCC--CCHHHHHCCCEEEECC---C-CHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf ----77653221001111345--4444--5144430044899725---4-202333455296048753355248989998
Q gi|254781097|r 231 ----EKVQKQYDELGCKATLA--CFFK--DIERYIVEANLLICRS---G-ALTVSEIAVIGRPAILVPYPHSVDQDQLHN 298 (369)
Q Consensus 231 ----~~~~~~~~~~~~~~~v~--~f~~--~m~~~~~~aDlvIsra---G-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~N 298 (369)
+++.+ +.....++.+. +..+ ++..+++.||+++..| | +.++.|++++|+|.|.-+ +++ .
T Consensus 238 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~adv~v~~S~~Egfgl~~lEAm~~G~PVVas~----vgG----i 308 (372)
T cd03792 238 WIVYEEVLE-YAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGP----VGG----I 308 (372)
T ss_pred HHHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEEECC----CCC----C
T ss_conf 899999999-7188996699936888678999999539799957642344469999998699899837----998----3
Q ss_pred HHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf 999998898899800019989999999998618999999999998527-83279999999999998
Q gi|254781097|r 299 AYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKG-KPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 299 A~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~-~~~aa~~i~~~i~~la~ 363 (369)
.+.+.+...|++++ +.+.+++++..+++||+.+++|++++++.. ......+.++.=++|..
T Consensus 309 ~e~v~dg~~G~Lv~----~~d~~A~~i~~ll~d~~l~~~mg~~ar~~v~~~f~~~~~~~~yl~L~~ 370 (372)
T cd03792 309 PLQIEDGETGFLVD----TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred HHHCCCCCCEEECC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 77604898579889----869999999999749999999999999999987899999999999998
No 71
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.94 E-value=2.5e-07 Score=70.69 Aligned_cols=152 Identities=11% Similarity=0.194 Sum_probs=97.2
Q ss_pred CCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHCCC--CCCCCCCCC--CCHHH
Q ss_conf 47814898630432-22102333445443232024-66067762025516776532210011--113454444--51444
Q gi|254781097|r 183 DQPFHLLVFGGSQG-AKVFSDIVPKSIALIPEMQR-KRLVIMQQVREDDKEKVQKQYDELGC--KATLACFFK--DIERY 256 (369)
Q Consensus 183 ~~~~~ILv~GGS~G-a~~ln~~v~~~~~~l~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~--~~~v~~f~~--~m~~~ 256 (369)
+++++|+.. |.+- -+.+. .+.+++..+.+... ..+...+.+.....+.+++...+.+. ++.+.++.+ ++.++
T Consensus 228 ~~~~~i~sv-grlv~~Kg~~-~li~A~~~l~~~~~~~~~~~~iiG~G~~~~~l~~~~~~l~l~~~v~f~G~~~~~~v~~~ 305 (407)
T cd04946 228 DDTLRIVSC-SYLVPVKRVD-LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEE-ECCCHHCCHH-HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf 896599996-1773003889-99999999986589938999998268128999999997799887999278996999999
Q ss_pred HH--CCCEEEEC---CC-CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHC
Q ss_conf 30--04489972---54-20233345529604875335524898999899999889889980001998999999999861
Q gi|254781097|r 257 IV--EANLLICR---SG-ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMK 330 (369)
Q Consensus 257 ~~--~aDlvIsr---aG-~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~ 330 (369)
|+ .+|+.+.- -| ..++.|++++|+|.|...- ++ +.+.+.+...|+++++++ +++.|+++|..+++
T Consensus 306 ~~~~~~d~~~~~s~~eg~p~~~~Eama~g~pvi~t~~----~g----~~e~v~~~~~g~l~~~~~-~~~~la~~i~~l~~ 376 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GG----TPEIVDNGGNGLLLSKDP-TPNELVSSLSKFID 376 (407)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCC----CC----CHHHEECCCCEEEECCCC-CHHHHHHHHHHHHH
T ss_conf 9856961999566334641799999974999998479----99----841230698279968999-99999999999980
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 899999999999852
Q gi|254781097|r 331 KPSCLVQMAKQVSMK 345 (369)
Q Consensus 331 d~~~l~~m~~~~~~~ 345 (369)
||+.+++|++++++.
T Consensus 377 ~~~~~~~~~~~ar~~ 391 (407)
T cd04946 377 NEEEYQTMREKAREK 391 (407)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 72
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.90 E-value=4.1e-07 Score=69.27 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=76.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHCCCEEEECC--C-CHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 60677620255167765322100111134544445--144430044899725--4-202333455296048753355248
Q gi|254781097|r 218 RLVIMQQVREDDKEKVQKQYDELGCKATLACFFKD--IERYIVEANLLICRS--G-ALTVSEIAVIGRPAILVPYPHSVD 292 (369)
Q Consensus 218 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~--m~~~~~~aDlvIsra--G-~~Ti~E~~~~g~P~IlIP~p~a~~ 292 (369)
.+.|+ ++..+.+++++.. ..|+++.+++++ +.++|+.||++|.-+ | +.++-|++++|+|+|...- +
T Consensus 223 ~L~i~--G~g~~~~~l~~~~---~~~V~f~g~~~~~~~~~~~~~a~~~v~ps~E~FGi~~vEAma~G~PvIa~~~----g 293 (351)
T cd03804 223 RLVVI--GDGPELDRLRAKA---GPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGK----G 293 (351)
T ss_pred CEEEE--ECCHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHCCEEEECCHHCCCCHHHHHHHCCCCEEEECC----C
T ss_conf 78999--8473799999667---8987998038989999999838869951642079759999976998898289----9
Q ss_pred CHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHH-HHHHHHHCC
Q ss_conf 989998999998898899800019989999999998618999999-999998527
Q gi|254781097|r 293 QDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQ-MAKQVSMKG 346 (369)
Q Consensus 293 ~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~-m~~~~~~~~ 346 (369)
+ ..+.+.+.-.|+++++. |++.|+++|..+++||+...+ +++.++.++
T Consensus 294 G----~~e~v~~g~tG~l~~~~--~~~~la~ai~~~~~~~~~~~~~~r~~a~~Fs 342 (351)
T cd03804 294 G----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAERFS 342 (351)
T ss_pred C----CCCEECCCCCEEEECCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 9----75501589978995989--9999999999998595015999999999679
No 73
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.87 E-value=2e-06 Score=64.41 Aligned_cols=146 Identities=10% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHCCCCCCC-CCCCCCCH-HHHHCCCEEEEC----CCCHHHHHH
Q ss_conf 33445443232024660677620255167-765322100111134-54444514-443004489972----542023334
Q gi|254781097|r 203 IVPKSIALIPEMQRKRLVIMQQVREDDKE-KVQKQYDELGCKATL-ACFFKDIE-RYIVEANLLICR----SGALTVSEI 275 (369)
Q Consensus 203 ~v~~~~~~l~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~~~~v-~~f~~~m~-~~~~~aDlvIsr----aG~~Ti~E~ 275 (369)
.+.+++..+.+. ..+++ +.+.|....+ .+.......+.++.+ .+|.+++. .+|++||+++.- +-|.+-.|+
T Consensus 313 ll~~a~~~~~~~-~~~~v-i~G~G~~~~e~~~~~l~~~~~~~~~~~~~~~e~l~~~lya~aD~~l~PS~~EP~Gl~qleA 390 (476)
T cd03791 313 LLLEALPELLEL-GGQLV-ILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYA 390 (476)
T ss_pred HHHHHHHHHHHC-CCEEE-EEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCEEECCCCCCCCCHHHHHH
T ss_conf 999999999963-98899-9946977899999999976899599998068788999998499974255457854899999
Q ss_pred HHHCCCEEEEECCCCCCCHHH--HHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHH---CCHHHHHHHHHHHHHC--CCC
Q ss_conf 552960487533552489899--989999988988998000199899999999986---1899999999999852--783
Q gi|254781097|r 276 AVIGRPAILVPYPHSVDQDQL--HNAYYLQEGGGAKVITENFLSPERLAEELCSAM---KKPSCLVQMAKQVSMK--GKP 348 (369)
Q Consensus 276 ~~~g~P~IlIP~p~a~~~hQ~--~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll---~d~~~l~~m~~~~~~~--~~~ 348 (369)
+++|+|.|.= .+++-.. .........|-|+++++. +++.|.++|.+.+ +||+++++|.+++.+. +-.
T Consensus 391 m~~GtppIa~----~tGGL~dtV~d~~~~~~~~tGf~f~~~--~~~~l~~ai~~al~~~~~~~~~~~l~~~am~~~fsW~ 464 (476)
T cd03791 391 MRYGTVPIVR----ATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWD 464 (476)
T ss_pred HHCCCCEEEC----CCCCCCCEEECCCCCCCCCCEEEECCC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf 8669975980----699986510036667777745886799--9999999999999985799999999998864289929
Q ss_pred HHHHHHHH
Q ss_conf 27999999
Q gi|254781097|r 349 QAVLMLSD 356 (369)
Q Consensus 349 ~aa~~i~~ 356 (369)
.+|++..+
T Consensus 465 ~~A~~y~~ 472 (476)
T cd03791 465 RSAKEYLE 472 (476)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 74
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.81 E-value=4e-06 Score=62.30 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHCCCCCCC-CCCCCCCH-HHHHCCCEEEEC----CCCHHHHH
Q ss_conf 333445443232024660677620255167-765322100111134-54444514-443004489972----54202333
Q gi|254781097|r 202 DIVPKSIALIPEMQRKRLVIMQQVREDDKE-KVQKQYDELGCKATL-ACFFKDIE-RYIVEANLLICR----SGALTVSE 274 (369)
Q Consensus 202 ~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~~~~v-~~f~~~m~-~~~~~aDlvIsr----aG~~Ti~E 274 (369)
+.+.+++..+.+. +.+++| .++|....+ .++......+.++.+ .+|.+.+. .++++||+++.- +-|.+-.|
T Consensus 309 ~ll~~a~~~~~~~-~~~~vi-~G~G~~~~~~~l~~l~~~~~~~~~~~~gf~e~l~~~iya~aD~~lmPS~~EP~Gl~qle 386 (476)
T PRK00654 309 DLVLEALDEILEQ-GGQLVL-LGTGDPELEEAFRALAARYPGRVGVQIGYDEALAHRIYAGADFFLMPSRFEPCGLTQLY 386 (476)
T ss_pred HHHHHHHHHHHHC-CCEEEE-EECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEECCCCCCCCCHHHHH
T ss_conf 9999999999970-998999-94597899999999998779888999578868989998728878645611367768999
Q ss_pred HHHHCCCEEEEECCCCCCCH--HHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHH---HHHCCHHHHHHHHHHHHHC--CC
Q ss_conf 45529604875335524898--99989999988988998000199899999999---9861899999999999852--78
Q gi|254781097|r 275 IAVIGRPAILVPYPHSVDQD--QLHNAYYLQEGGGAKVITENFLSPERLAEELC---SAMKKPSCLVQMAKQVSMK--GK 347 (369)
Q Consensus 275 ~~~~g~P~IlIP~p~a~~~h--Q~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~---~ll~d~~~l~~m~~~~~~~--~~ 347 (369)
++++|+|-|.- .+++- .........+.|-|+++++. +++.|..++. .+++||+.+++|.+++.+. +=
T Consensus 387 Am~~Gt~Pvv~----~tGGL~dtV~d~~~~~~~~tGf~f~~~--~~~~l~~ai~~al~~~~~~~~~~~l~~~~m~~~fsW 460 (476)
T PRK00654 387 ALRYGTLPIVR----RTGGLADTVIDYDPEDGGATGFVFDDF--NAEDLLTALRRALELYRQPDLWRALQRQAMAQDFSW 460 (476)
T ss_pred HHHCCCCCEEE----CCCCCCCCCCCCCCCCCCCCEEEECCC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 98769985881----799975514566667787634873799--999999999999988569999999999985237995
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 32799999999999
Q gi|254781097|r 348 PQAVLMLSDLVEKL 361 (369)
Q Consensus 348 ~~aa~~i~~~i~~l 361 (369)
..+|++..++=+++
T Consensus 461 ~~~A~~y~~lY~~l 474 (476)
T PRK00654 461 DKSAEEYLELYRRL 474 (476)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999997
No 75
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875 This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=98.79 E-value=4.4e-07 Score=69.01 Aligned_cols=324 Identities=18% Similarity=0.205 Sum_probs=169.4
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHCCCCCCCEEEEEC-CCCCCCCHHHHHHH-----HHHCCCCCHH
Q ss_conf 88525620799999999965-98399995723767624446875168752-56565331233211-----1000121101
Q gi|254781097|r 12 GGTGGHVFPAVALSHELKNR-GYAVYLITDRRARSFITDFPADSIYEIVS-SQVRFSNPFVFWNS-----LVILWKAFIA 84 (369)
Q Consensus 12 gGTGGHi~palala~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----l~~~~~~~~~ 84 (369)
||-|=| .--|+++|.++ .-+|.-.++.+.+.-+...++. +.-.. ..+.++.+...+.. .-.-++.|--
T Consensus 16 GGAGVH---v~~L~~~L~~l~~vdVr~fG~~rteadiPaiPna--~~~~gsL~v~~Y~~~~~L~~GldPran~aL~tfSv 90 (416)
T TIGR02149 16 GGAGVH---VEELARELARLVDVDVRCFGDKRTEADIPAIPNA--FFSEGSLKVLGYRPWSELKEGLDPRANKALKTFSV 90 (416)
T ss_pred CCCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC--CCCCCCEEEEECCCCHHHCCCCCHHHHHHHCCHHH
T ss_conf 887411---8889999986534004643887442334566622--16898328874078743225677225754023115
Q ss_pred HHHHHHHCC-CCEEEECCCCCCHHHHHHHHHCCCCCEE--E--CCCCCC------H-------HHHHHHHHHHHHH-HCC
Q ss_conf 355542034-4424312653210247888623411012--2--153200------1-------5677889999987-413
Q gi|254781097|r 85 SLRLIKKLK-PNVVVGFGGYHSISPLLAGMILRIPSMV--H--EQNVIM------G-------KANRLLSWGVQII-ARG 145 (369)
Q Consensus 85 ~~~ii~~~k-PDvVi~tGGy~s~P~~iaA~~l~iP~vi--h--EqN~v~------G-------~~nk~l~~~a~~v-~~~ 145 (369)
-+.+.++.. -|+|-|===|.++...+|..+.++|.|+ | |+ .+| | .+-|=....||.| ++|
T Consensus 91 DL~m~~d~~~~~vvHsHTWYa~LAG~LAk~Lyd~PlVvTaHSLEP-LRPWK~EQLGgGY~lSsW~EktA~~aAd~vIAVS 169 (416)
T TIGR02149 91 DLAMANDVEDADVVHSHTWYAALAGHLAKLLYDVPLVVTAHSLEP-LRPWKKEQLGGGYKLSSWAEKTAIEAADRVIAVS 169 (416)
T ss_pred HHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEHH
T ss_conf 788761100271553207888789999999669983997303788-8713175658974202478888998504065311
Q ss_pred C------CCCCCCCCCCCCEEEECCCCHHHHHH-----HHHHHHHHCCCCC-CEEEEEECCCCCCCHHH--HHHHHHHHH
Q ss_conf 4------32222355667325304443245654-----3334433114478-14898630432221023--334454432
Q gi|254781097|r 146 L------VSSQKKVLLRKIIVTGNPIRSSLIKM-----KDIPYQSSDLDQP-FHLLVFGGSQGAKVFSD--IVPKSIALI 211 (369)
Q Consensus 146 ~------~~~~~~~~~~k~~~~G~PvR~~~~~~-----~~~~~~~~~~~~~-~~ILv~GGS~Ga~~ln~--~v~~~~~~l 211 (369)
- -..++.++.+|++++=|=|.-+-+.. ....+.+.+.|+. ..+|..| .|.+ =|...++.+
T Consensus 170 ~amr~DiL~~YP~lD~~kv~Vv~NGId~~~y~~~~~~~~~~v~~~~Gid~~rP~~lFVG------RItRQKGv~~L~~A~ 243 (416)
T TIGR02149 170 GAMREDILKVYPDLDPEKVHVVYNGIDTKEYKPAADDDGNKVLDRYGIDRSRPYVLFVG------RITRQKGVPHLLKAV 243 (416)
T ss_pred HHCHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEE------EEECCCCHHHHHHHH
T ss_conf 10335583158688846468886476457606888874113466326799888789852------020316558999999
Q ss_pred HHHCCCCCEEEEEECCCCH----HHHHHHHHHCCC---C-CCCCCC--CCCCHHHHHCCCEEEECCCC---HHH-HHHHH
Q ss_conf 3202466067762025516----776532210011---1-134544--44514443004489972542---023-33455
Q gi|254781097|r 212 PEMQRKRLVIMQQVREDDK----EKVQKQYDELGC---K-ATLACF--FKDIERYIVEANLLICRSGA---LTV-SEIAV 277 (369)
Q Consensus 212 ~~~~~~~~~v~~~~g~~~~----~~~~~~~~~~~~---~-~~v~~f--~~~m~~~~~~aDlvIsraG~---~Ti-~E~~~ 277 (369)
.. ....++|+.+.|..|. ++++.....+.. + +++-.- ..++.++++.|+++||=|=. +.+ .|++|
T Consensus 244 ~~-~~~dvqvVLCAgapDTPEv~~Ev~~~~a~l~~~R~gv~WI~~ml~~~~~~~L~~~A~vFvCPSvYEPLGIvNLEAMA 322 (416)
T TIGR02149 244 HL-ISKDVQVVLCAGAPDTPEVAEEVRQAVAKLDREREGVIWIEKMLPKEELVELLSNAEVFVCPSVYEPLGIVNLEAMA 322 (416)
T ss_pred HH-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHH
T ss_conf 62-55203598706767872068999999998876169838635658878999998469478648442542055687885
Q ss_pred HCCCEEE-----EECCCCCCCHHHHHHHHHHHCCCEEEEEHHC------------CCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 2960487-----5335524898999899999889889980001------------9989999999998618999999999
Q gi|254781097|r 278 IGRPAIL-----VPYPHSVDQDQLHNAYYLQEGGGAKVITENF------------LSPERLAEELCSAMKKPSCLVQMAK 340 (369)
Q Consensus 278 ~g~P~Il-----IP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~------------~~~~~l~~~i~~ll~d~~~l~~m~~ 340 (369)
|++|.|. || .+ ..+.--|.+++.++ -..+.|+++|..++.||+.-++|.+
T Consensus 323 C~tpVVAS~~GGIp--EV-----------V~dg~TG~LV~~~~lhdGtGtP~d~d~f~~~LA~ai~~ll~dp~~A~k~G~ 389 (416)
T TIGR02149 323 CGTPVVASAVGGIP--EV-----------VVDGETGFLVPIDDLHDGTGTPDDDDKFEADLAKAIDALLADPELAKKMGE 389 (416)
T ss_pred CCCCEEECCCCCCC--CE-----------EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCH
T ss_conf 07863440368955--26-----------833744312470145577888887405689999999997429578988344
Q ss_pred HHHHCCCC-HHHHHHHHHHHHH
Q ss_conf 99852783-2799999999999
Q gi|254781097|r 341 QVSMKGKP-QAVLMLSDLVEKL 361 (369)
Q Consensus 341 ~~~~~~~~-~aa~~i~~~i~~l 361 (369)
+.++.... .+=+-||+.-.++
T Consensus 390 aGr~R~~~~FSW~~iA~kT~~~ 411 (416)
T TIGR02149 390 AGRKRAVEEFSWESIAKKTVEL 411 (416)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3465542125757899999999
No 76
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=98.76 E-value=2e-06 Score=64.38 Aligned_cols=305 Identities=18% Similarity=0.199 Sum_probs=171.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCC--EEEEEE----C----HHHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 852562079999999996598--399995----7----2376762444-6875168752565653312332111000121
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNRGY--AVYLIT----D----RRARSFITDF-PADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 13 GTGGHi~palala~~L~~~g~--~v~~~~----~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
-|||=+.=-+-||++|.++.+ .|.++| | ....+.++.. ++..+..++-++.+.-..-.+|-.|-.+..
T Consensus 24 DTGGQ~~YVlELar~La~~~ev~qVdlvTR~I~D~~vspDYA~~~E~i~p~ArIvRl~fGP~rYLRKE~LWPyLD~~~D- 102 (445)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPKARIVRLPFGPRRYLRKELLWPYLDELAD- 102 (445)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH-
T ss_conf 6343377888889986158975147677503431776802334776408995599745788855740156600789999-
Q ss_pred CHHHHHHHH--HCCCCEEEE---CCCCCCHHHHHHHHHCCCCCEE--ECCCCCCHHH--HHHHH----------------
Q ss_conf 101355542--034442431---2653210247888623411012--2153200156--77889----------------
Q gi|254781097|r 82 FIASLRLIK--KLKPNVVVG---FGGYHSISPLLAGMILRIPSMV--HEQNVIMGKA--NRLLS---------------- 136 (369)
Q Consensus 82 ~~~~~~ii~--~~kPDvVi~---tGGy~s~P~~iaA~~l~iP~vi--hEqN~v~G~~--nk~l~---------------- 136 (369)
+....++ ...||+|=+ --|||- +-.|..|+||.|. | + +||. -|+++
T Consensus 103 --~~l~ylr~~g~lPdlIH~HYADAGYVG---~~ls~~L~vPlvfTGH---S-LGR~Kr~RLLa~G~~skaPkP~~~IE~ 173 (445)
T TIGR02472 103 --QLLSYLRQQGRLPDLIHAHYADAGYVG---ARLSRLLGVPLVFTGH---S-LGREKRRRLLAAGLKSKAPKPPQEIEK 173 (445)
T ss_pred --HHHHHHHHCCCCCCCCHHHHCCHHHHH---HHHHHHCCCCEEEECC---C-CCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf --999999735888873101010155899---9998625898488375---3-577899999843400267887789998
Q ss_pred ---------------HHHHHHHCCCCCC-------CCCCCCCCCEEEECCCC-HHHHH---------HHHHHHHHHCCCC
Q ss_conf ---------------9999874134322-------22355667325304443-24565---------4333443311447
Q gi|254781097|r 137 ---------------WGVQIIARGLVSS-------QKKVLLRKIIVTGNPIR-SSLIK---------MKDIPYQSSDLDQ 184 (369)
Q Consensus 137 ---------------~~a~~v~~~~~~~-------~~~~~~~k~~~~G~PvR-~~~~~---------~~~~~~~~~~~~~ 184 (369)
..|+.|-+|+.+. +..+-+++..|+.+=|. ..|+- ....-.+++...+
T Consensus 174 ~f~is~RI~AEE~tL~~AslvitST~QEi~~QY~~Y~~y~P~r~~VIPPGvD~~rFyp~~~~~~~~~i~~~L~rFL~~p~ 253 (445)
T TIGR02472 174 QFNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYDPERMEVIPPGVDLSRFYPPQSSEEDSEIDKLLARFLKDPE 253 (445)
T ss_pred HHCCCCCHHHHHHHHHHCCEEEEECCCEEHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 61226414788999851474586145103212101478670211351788887543478888887588875223114788
Q ss_pred CCEEEEEECCCCCCCHH----HHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHHHHH-------CCCCCCCCCC---
Q ss_conf 81489863043222102----3334454432320-2466067762025516776532210-------0111134544---
Q gi|254781097|r 185 PFHLLVFGGSQGAKVFS----DIVPKSIALIPEM-QRKRLVIMQQVREDDKEKVQKQYDE-------LGCKATLACF--- 249 (369)
Q Consensus 185 ~~~ILv~GGS~Ga~~ln----~~v~~~~~~l~~~-~~~~~~v~~~~g~~~~~~~~~~~~~-------~~~~~~v~~f--- 249 (369)
+..||-+ | +.-. ..+.++.-.=+.. .+-|++++.+|..+ ..++.+.-.+ .-..+.+.|-
T Consensus 254 KP~ilai--s---Rpd~RKNi~~Lv~aYG~~p~L~~~aNLVlvlG~RdD-~r~me~~qR~Vl~~vl~~iD~YDLYGkvAy 327 (445)
T TIGR02472 254 KPPILAI--S---RPDRRKNIPALVEAYGRSPKLQEMANLVLVLGSRDD-IRKMESSQREVLTEVLLLIDRYDLYGKVAY 327 (445)
T ss_pred CCEEEEE--C---CCCCCCCHHHHHHHHCCCHHHHHHCCEEEEECCCCC-HHHCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 7838872--2---788766745556200788667652080887527788-531215789999999876300024564026
Q ss_pred -----CCCCHHHHHCCCE--------EEECCCCHHHHHHHHHCCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEHHC
Q ss_conf -----4451444300448--------99725420233345529604875335524898-999899999889889980001
Q gi|254781097|r 250 -----FKDIERYIVEANL--------LICRSGALTVSEIAVIGRPAILVPYPHSVDQD-QLHNAYYLQEGGGAKVITENF 315 (369)
Q Consensus 250 -----~~~m~~~~~~aDl--------vIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~h-Q~~NA~~l~~~G~a~~i~~~~ 315 (369)
.+|+|++|..|=. +.|=+=|.|+-||+|||+|+|.- .||- + +.+.+..=|.+|+ -
T Consensus 328 PK~H~~~dvP~lYRLAA~~rGiFVNPALTEPFGLTLlEAAAcGLPivAT-----~DGGP~----dI~~~C~NGLLvd--~ 396 (445)
T TIGR02472 328 PKHHRPDDVPELYRLAARRRGIFVNPALTEPFGLTLLEAAACGLPIVAT-----EDGGPR----DIIANCRNGLLVD--V 396 (445)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCEEEC-----CCCCCH----HHHHHCCCCCEEC--C
T ss_conf 8888811232678999865986762721253016899999769972107-----864866----8884288875005--7
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99899999999986189999999999985
Q gi|254781097|r 316 LSPERLAEELCSAMKKPSCLVQMAKQVSM 344 (369)
Q Consensus 316 ~~~~~l~~~i~~ll~d~~~l~~m~~~~~~ 344 (369)
++.+.|..++++.++|+++++.+++|.-+
T Consensus 397 ld~e~i~~AL~~alsd~~QW~~Ws~NGi~ 425 (445)
T TIGR02472 397 LDLEAIASALEQALSDSSQWQTWSDNGIE 425 (445)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89899999999733890667899985577
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.71 E-value=1.7e-05 Score=57.98 Aligned_cols=333 Identities=12% Similarity=0.070 Sum_probs=149.9
Q ss_pred CCCCCEEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECC----CCCCCCHH----HH
Q ss_conf 99887699987-88525620799999999965983999957237676244468751687525----65653312----33
Q gi|254781097|r 1 MSENNVILLVA-GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSS----QVRFSNPF----VF 71 (369)
Q Consensus 1 M~~~~~ili~~-gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~ 71 (369)
|.+.+-|+..+ .-=+.+.++-.-++++|.++|+.|.|+...+......+. ......+... .....++. ..
T Consensus 1 ~~~~~~Iv~~s~~~W~~~~qRpQhl~~~la~~g~rVlyv~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 79 (373)
T cd04950 1 MADRPDILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPR-GRDWVRVVLRLRAALRRPRRLDPLIPAR 79 (373)
T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 998998899627897876748899999999689869999189875444543-1133442312454346766667666302
Q ss_pred -HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE---CCCCCCHHHH------HHHHHHHHH
Q ss_conf -211100012110135554203444243126532102478886234110122---1532001567------788999998
Q gi|254781097|r 72 -WNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVH---EQNVIMGKAN------RLLSWGVQI 141 (369)
Q Consensus 72 -~~~l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vih---EqN~v~G~~n------k~l~~~a~~ 141 (369)
.......+...........+.++.++..+ ......+...+....++.| |-.+.+|... +-+...+|.
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~~~~~~ilw~~---~P~~~~~~~~l~~~~vVYdcvDd~~~~~~~~~~~~~~e~~l~~~ad~ 156 (373)
T cd04950 80 RRRLLRLLLNALLFWAQLELGFGRPILWYY---TPYTLPVAALLQASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADL 156 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCE
T ss_conf 668899999999999998628997399981---73068898753788389995061221379868999999999997799
Q ss_pred HHCCCCCCCCCC--CCCCCEEEECCCCHHHHHHHHHHH--HH-HCCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHC
Q ss_conf 741343222235--566732530444324565433344--33-1144781489863043222102-33344544323202
Q gi|254781097|r 142 IARGLVSSQKKV--LLRKIIVTGNPIRSSLIKMKDIPY--QS-SDLDQPFHLLVFGGSQGAKVFS-DIVPKSIALIPEMQ 215 (369)
Q Consensus 142 v~~~~~~~~~~~--~~~k~~~~G~PvR~~~~~~~~~~~--~~-~~~~~~~~ILv~GGS~Ga~~ln-~~v~~~~~~l~~~~ 215 (369)
|+++.+...+.. ...++.+++|=|..+.+....... .. ....+.. ++..-|+... -++ +.+.+++...
T Consensus 157 v~~ts~~L~~~~~~~~~~~~~i~nGvD~~~F~~~~~~~~~~~~~~~~~~p-~igy~G~i~~-~~D~~ll~~~a~~~---- 230 (373)
T cd04950 157 VFTTSPSLYEAKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRP-VIGYYGAIAE-WLDLELLEALAKAR---- 230 (373)
T ss_pred EEECCHHHHHHHHHCCCCEEEECCEECHHHHHHHCCCCCCCHHHCCCCCC-EEEEEECCCC-CCCHHHHHHHHHHC----
T ss_conf 99859999998874699989988821788841001576880455047998-8999925752-14899999999988----
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHCCCEEEE--------CCC-CHHHHHHHHHCCCEEE
Q ss_conf 46606776202551677653221001111345444--451444300448997--------254-2023334552960487
Q gi|254781097|r 216 RKRLVIMQQVREDDKEKVQKQYDELGCKATLACFF--KDIERYIVEANLLIC--------RSG-ALTVSEIAVIGRPAIL 284 (369)
Q Consensus 216 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~--~~m~~~~~~aDlvIs--------raG-~~Ti~E~~~~g~P~Il 284 (369)
+++.++.++ ..+...-...+.. ..|++..|.+ ++++.+++.+|+.|- ++- -.-+.|-+++|+|.|.
T Consensus 231 -p~~~~~liG-p~~~~~~~~~l~~-~~Nv~~lG~~~~~~lp~~l~~~Dv~l~P~~~~~~t~~~~P~Kl~EYlA~G~PVVs 307 (373)
T cd04950 231 -PDWSFVLIG-PVDVSIDPSALLR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVA 307 (373)
T ss_pred -CCCEEEEEE-CCCCCCCHHHHHC-CCCEEECCCCCHHHHHHHHHHCCEEEEECCCCHHHHCCCCCHHHHHHHCCCCEEE
T ss_conf -996899994-3887558345625-9987984898999999999857877741205545424686379999866998896
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 53355248989998999998898899800019989999999998618--99999999999852783279999999999
Q gi|254781097|r 285 VPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKK--PSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 285 IP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d--~~~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
.|+|... .-.+....+.. +++.+.++|...+.+ ++...+..+-+++.+=..-++++...|++
T Consensus 308 t~~~~~~-----------~~~~~~~~~~~---~~~~F~~~i~~al~~~~~~~~~~~~~~a~~~sW~~r~~~~~~~i~~ 371 (373)
T cd04950 308 TPLPEVR-----------RYEDEVVLIAD---DPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred CCCHHHH-----------HCCCCEEEECC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 5848877-----------31686799779---9999999999998438928899999999979999999999999975
No 78
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.66 E-value=2.3e-06 Score=63.98 Aligned_cols=193 Identities=21% Similarity=0.245 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 52562079999999996598399995723767624446875168752565653312332111000121101355542034
Q gi|254781097|r 14 TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLK 93 (369)
Q Consensus 14 TGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~k 93 (369)
.||.......++++|.++||+|.+.+ ......++.+++++
T Consensus 12 ~GG~~~~~~~l~~~l~~~gh~v~v~~----------------------------------------~~~~~~~~~~~~~~ 51 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA----------------------------------------LLLLLLLRILRGFK 51 (229)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEE----------------------------------------CCHHHHHHHHHHCC
T ss_conf 99599999999999998699999993----------------------------------------88499999998099
Q ss_pred CCEEEECCCCCCHHHH-HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 4424312653210247-888623411012215320015677889999987413432222355667325304443245654
Q gi|254781097|r 94 PNVVVGFGGYHSISPL-LAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKM 172 (369)
Q Consensus 94 PDvVi~tGGy~s~P~~-iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G~PvR~~~~~~ 172 (369)
||+|...+.+...... .++...++|++.+.............. ...... .......++|....
T Consensus 52 pDiIH~h~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~---~~~~~~-------~~~~~~~~vgrl~~------ 115 (229)
T cd01635 52 PDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNRSLLEGVPL---SLLALS-------IGLADKVFVGRLAP------ 115 (229)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH---HHHHHC-------CCCEEEEEEEECCC------
T ss_conf 88899899727999999999848991999989998034244555---555421-------13618999995462------
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH--CCCCCCCCCC-
Q ss_conf 3334433114478148986304322210233344544323202466067762025516776532210--0111134544-
Q gi|254781097|r 173 KDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDE--LGCKATLACF- 249 (369)
Q Consensus 173 ~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~--~~~~~~v~~f- 249 (369)
-+.+. .+.+++..+... ..+.+++..++..+.+........ ...++..+++
T Consensus 116 ------------------------~K~~~-~li~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (229)
T cd01635 116 ------------------------EKGLD-DLIEAFALLKER-GPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGL 169 (229)
T ss_pred ------------------------CCCHH-HHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf ------------------------12999-999999998867-8994899996880688999999972887746323622
Q ss_pred --CCCCHHHHHCCCEEEECCC----CHHHHHHHHHCCCEEEEECC
Q ss_conf --4451444300448997254----20233345529604875335
Q gi|254781097|r 250 --FKDIERYIVEANLLICRSG----ALTVSEIAVIGRPAILVPYP 288 (369)
Q Consensus 250 --~~~m~~~~~~aDlvIsraG----~~Ti~E~~~~g~P~IlIP~p 288 (369)
.+++..+++.||+++.-+- +.++.|++++|+|.|..+.+
T Consensus 170 ~~~~~~~~~~~~~d~~v~pS~~E~~~~~~~EA~a~G~pvi~~~~g 214 (229)
T cd01635 170 DPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCC
T ss_conf 106789999970680660566678888999999829989987899
No 79
>pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=98.61 E-value=6e-06 Score=61.08 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 25620799999999965983999957237676244468751687525656533123321110001211013555420344
Q gi|254781097|r 15 GGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKP 94 (369)
Q Consensus 15 GGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~kP 94 (369)
.||..-+++||++|. ..+++..+....--..+ .. .... ..+.........+..-.|
T Consensus 1 aG~~~Q~~gLAeaL~-~~~~~~~i~~~~~~~~~------------p~--~~~~---------~~~~~~~~~~~~~~~p~P 56 (308)
T pfam06258 1 AGHENQALGLAEALG-LPYEIREVRVRKPWRWL------------PR--RLPA---------PLWAILGPFAPALEPPWP 56 (308)
T ss_pred CCCHHHHHHHHHHCC-CCCEEEEEECCCHHHHC------------CC--CCCC---------CHHHHHCCCCCCCCCCCC
T ss_conf 963889999999709-98717999528677756------------76--5785---------045542345411158999
Q ss_pred CEEEECCCCCCHHHHHHHHHC-CCC-CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCEE-EECC--CCHH
Q ss_conf 424312653210247888623-411-012215320015677889999987413432222355-667325-3044--4324
Q gi|254781097|r 95 NVVVGFGGYHSISPLLAGMIL-RIP-SMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVL-LRKIIV-TGNP--IRSS 168 (369)
Q Consensus 95 DvVi~tGGy~s~P~~iaA~~l-~iP-~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~-~~k~~~-~G~P--vR~~ 168 (369)
|+||+.|- -+.|+.++.+.+ +-. ..||=||-.. .....|.+.+ ++- ...+ .+++.. .|.| +.++
T Consensus 57 dliIs~Gr-~t~~~~~~lkr~~~~~~~~I~i~~P~~------~~~~FDliv~--P~H-D~~~~g~NVi~t~gal~~i~~~ 126 (308)
T pfam06258 57 DLVIGAGR-QTHPLLRLLRRLSGGKTKTVQIMDPRL------PLGRFDLVIA--PEH-DGVPPGPNVLLTVGALHRVTPQ 126 (308)
T ss_pred CEEEECCC-HHHHHHHHHHHHCCCCCEEEEEECCCC------CCCCCCCEEC--CCC-CCCCCCCCEEEECCCCCCCCHH
T ss_conf 88997881-479999999997499967999818998------8134771025--745-5888999789625755547877
Q ss_pred HHHHHHHHHHH-HCCCCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC-C
Q ss_conf 56543334433-114478148986304322210233----34454432320246606776202551677653221001-1
Q gi|254781097|r 169 LIKMKDIPYQS-SDLDQPFHLLVFGGSQGAKVFSDI----VPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG-C 242 (369)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~~ILv~GGS~Ga~~ln~~----v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~ 242 (369)
-.......... ...+++...++.||+-....+++. +.+.+..+.......+.|+ +-.+-.+.+.+.+.+.- .
T Consensus 127 ~l~~~~~~~~~~~~~~~p~i~vLIGG~sk~~~~~~~~~~~l~~~i~~l~~~~~~~l~it--~SRRTP~~~~~~l~~~~~~ 204 (308)
T pfam06258 127 RLAEAAAAWPELAALPRPRVAVLVGGPSKHFRWDADAARRLLEQLQALLEAYGGSLLIT--TSRRTPEAAEAALRKLLGP 204 (308)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--ECCCCCHHHHHHHHHHHCC
T ss_conf 88777766554024778769999655787888899999999999999998779729999--4688969999999986089
Q ss_pred CCCCCCCC---CC-CHHHHHCCCEEEECCCC-HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 11345444---45-14443004489972542-0233345529604875335524898999899999889889980
Q gi|254781097|r 243 KATLACFF---KD-IERYIVEANLLICRSGA-LTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVIT 312 (369)
Q Consensus 243 ~~~v~~f~---~~-m~~~~~~aDlvIsraG~-~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~ 312 (369)
...+.-|. +| ...+|+.||.+|.-+-+ +.++|+++.|.|.-++|++....-++... +.|++.|.....+
T Consensus 205 ~~~~~~~~~~~~Npy~~~L~~Ad~iiVT~DSvSMisEA~~tGkPV~i~~l~~~~~r~~~f~-~~L~~~g~~r~f~ 278 (308)
T pfam06258 205 RPGLYVWDGTGPNPYFGFLAWADAVVVTADSVSMVSEAAATGAPVGVLPLEGKRGKFARFH-DSLEERGRVRPFT 278 (308)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHCCCEEECC
T ss_conf 9728982798864589999858868990671889999986499779996776665999999-9999879906777
No 80
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=8.6e-07 Score=66.99 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=85.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEE
Q ss_conf 89863043222102333445443232024660677620255167765322100111134544--4451444300448997
Q gi|254781097|r 188 LLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACF--FKDIERYIVEANLLIC 265 (369)
Q Consensus 188 ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIs 265 (369)
++|+-||- -..||+.+...- ...-.....-.++.|.|+.+...+ .+ .++++| .+.|.++...|.+|||
T Consensus 2 ifVTvGst-f~~f~rlv~k~e-~~el~~~i~e~lIvQyGn~d~kpv------ag--l~v~~F~~~~kiQsli~darIVIS 71 (161)
T COG5017 2 IFVTVGST-FYPFNRLVLKIE-VLELTELIQEELIVQYGNGDIKPV------AG--LRVYGFDKEEKIQSLIHDARIVIS 71 (161)
T ss_pred EEEEECCC-CCHHHHHHHHHH-HHHHHHHHHHHEEEEECCCCCCCC------CC--CEEEEECHHHHHHHHHHCCEEEEE
T ss_conf 48994575-552888970498-999998755533655358874445------55--278730207889998523317875
Q ss_pred CCCCHHHHHHHHHCCCEEEEECCC----CCCCHHHHHHHHHHHCCCEEEEEHHC
Q ss_conf 254202333455296048753355----24898999899999889889980001
Q gi|254781097|r 266 RSGALTVSEIAVIGRPAILVPYPH----SVDQDQLHNAYYLQEGGGAKVITENF 315 (369)
Q Consensus 266 raG~~Ti~E~~~~g~P~IlIP~p~----a~~~hQ~~NA~~l~~~G~a~~i~~~~ 315 (369)
|||.+|+..++..++|.|++|... ..||||..-|..|.+.+.-+.+.+-+
T Consensus 72 HaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte 125 (161)
T COG5017 72 HAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTE 125 (161)
T ss_pred CCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 268641777762499489987716677764269999999997549638973771
No 81
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.54 E-value=1.9e-05 Score=57.52 Aligned_cols=329 Identities=17% Similarity=0.171 Sum_probs=156.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 88769998788525620799999999965983999957237--6762444687516875256565331233211100012
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA--RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
+++++.|..-|.=||--|+.-=|..|.+.|++|.+++..+. -..+...+...++.++..+....+....+..+++...
T Consensus 2 ~~~~v~V~VLGDiGrSPRMqYHA~Sla~~g~~V~lvGy~~s~p~~~i~~~~~I~i~~l~~~p~~~~~l~~~l~~~~Kvl~ 81 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 96579999816778987889999999848987999987899988888519966999778888655545199999999999
Q ss_pred CCHHHHH-HHHHCCCCEEEECCCCCCHHHH----HHHHHCCCCCEE--ECCC-CCCH----HHH----------HHHHHH
Q ss_conf 1101355-5420344424312653210247----888623411012--2153-2001----567----------788999
Q gi|254781097|r 81 AFIASLR-LIKKLKPNVVVGFGGYHSISPL----LAGMILRIPSMV--HEQN-VIMG----KAN----------RLLSWG 138 (369)
Q Consensus 81 ~~~~~~~-ii~~~kPDvVi~tGGy~s~P~~----iaA~~l~iP~vi--hEqN-~v~G----~~n----------k~l~~~ 138 (369)
.+++... +.+-.+||.|+-- --.|.|.+ +++++.+..++| |.-+ ++++ ... +++.++
T Consensus 82 Q~~~L~~~L~~~~~~~~iLvQ-NPPsiPtl~v~~l~~~lr~~klIIDWHN~gyTIL~l~~g~~h~lV~~~k~~E~~fgr~ 160 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQ-NPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRL 160 (415)
T ss_pred HHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999835787579841-8876436999999999828829999058775122057888873899999999875503
Q ss_pred HHHHHCCCCCCCCCCC-----CCCCEEE-EC------CCC-----HHHHHHHHHHH-------HHHCCCCCCEEEEEECC
Q ss_conf 9987413432222355-----6673253-04------443-----24565433344-------33114478148986304
Q gi|254781097|r 139 VQIIARGLVSSQKKVL-----LRKIIVT-GN------PIR-----SSLIKMKDIPY-------QSSDLDQPFHLLVFGGS 194 (369)
Q Consensus 139 a~~v~~~~~~~~~~~~-----~~k~~~~-G~------PvR-----~~~~~~~~~~~-------~~~~~~~~~~ILv~GGS 194 (369)
++.-++-...+.+.+- ..++.+. -- |+- +.|.+...... .....++...+||..-|
T Consensus 161 a~~~lcVT~AM~~~L~~~~~~~~~~~vlyDrP~~~F~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~llVSSTS 240 (415)
T cd03816 161 ADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPPEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTS 240 (415)
T ss_pred CCEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 64605406899999986026688879982288897598867899999974355423233466531135777338995167
Q ss_pred C-CCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEECCCC-HHHHHHHHHHCC-CCCCCC-CC--CCCCHHHHHCCCEE
Q ss_conf 3-22210233344544323202-----46606776202551-677653221001-111345-44--44514443004489
Q gi|254781097|r 195 Q-GAKVFSDIVPKSIALIPEMQ-----RKRLVIMQQVREDD-KEKVQKQYDELG-CKATLA-CF--FKDIERYIVEANLL 263 (369)
Q Consensus 195 ~-Ga~~ln~~v~~~~~~l~~~~-----~~~~~v~~~~g~~~-~~~~~~~~~~~~-~~~~v~-~f--~~~m~~~~~~aDlv 263 (369)
- --..|+ .+.+++....... .+.+ ++..||+.. .+.+.+...+.. .++.+. .| .+|-+.++++|||=
T Consensus 241 WTpDEDF~-iLl~AL~~Yd~~~~~~~~~p~l-l~iITGKGP~K~~y~~~I~~~~l~~V~i~t~wL~~eDYP~lL~~ADLG 318 (415)
T cd03816 241 WTPDEDFG-ILLDALVAYEKSAATGPKLPKL-LCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLG 318 (415)
T ss_pred CCCCCCHH-HHHHHHHHHHHHHHCCCCCCCE-EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCC
T ss_conf 77765567-8999999997653214789987-999968853089999999862888219972578878899987415347
Q ss_pred EEC----CCC---HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEHHCCCHHHHHHHHHHHHCC---H
Q ss_conf 972----542---0233345529604875335524898999899999889-8899800019989999999998618---9
Q gi|254781097|r 264 ICR----SGA---LTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGG-GAKVITENFLSPERLAEELCSAMKK---P 332 (369)
Q Consensus 264 Isr----aG~---~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G-~a~~i~~~~~~~~~l~~~i~~ll~d---~ 332 (369)
||- ||- +-+-+-.-||+|.+.+-||-- .-|.+.| -|.+.. |+++|++.+..++.| .
T Consensus 319 VsLHtSSSGlDLPMKVVDMfG~GlPV~A~~f~~i---------~ELVk~~~NG~~F~----~~~eL~~~l~~l~~~~p~~ 385 (415)
T cd03816 319 VSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCI---------DELVKHGENGLVFG----DSEELAEQLIDLLSNFPNR 385 (415)
T ss_pred EEECCCCCCCCCCHHHHHHCCCCCCEEEECCCCH---------HHHHCCCCCCCEEC----CHHHHHHHHHHHHHCCCCH
T ss_conf 2421268766777021010268875798337517---------87722687876657----8999999999998559966
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999985278
Q gi|254781097|r 333 SCLVQMAKQVSMKGK 347 (369)
Q Consensus 333 ~~l~~m~~~~~~~~~ 347 (369)
+.++.|++++.+.+.
T Consensus 386 ~~l~~lk~~a~~~~~ 400 (415)
T cd03816 386 GKLNSLKKGAQEESE 400 (415)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 899999977777414
No 82
>PRK10017 putative pyruvyl transferase; Provisional
Probab=98.53 E-value=6.7e-05 Score=53.78 Aligned_cols=258 Identities=10% Similarity=0.107 Sum_probs=134.1
Q ss_pred CCCEEEECCC-CC-------CHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH-------CC----CCCCC-CC
Q ss_conf 4442431265-32-------102478886234110122153200156778899999874-------13----43222-23
Q gi|254781097|r 93 KPNVVVGFGG-YH-------SISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIA-------RG----LVSSQ-KK 152 (369)
Q Consensus 93 kPDvVi~tGG-y~-------s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~-------~~----~~~~~-~~ 152 (369)
+-|+||+.|| |- ++...++|++.+.|++++-|-.=| ..+.+....+..++ +- ++... -+
T Consensus 117 ~~D~vIs~GGs~~~D~yg~~~~~~~L~a~l~kKpv~~~aQgIGP-~~~~~~~~l~~~vl~~~d~ItvRD~~S~~~L~~lG 195 (426)
T PRK10017 117 GYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP-FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSN 195 (426)
T ss_pred HCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCC
T ss_conf 54789971776201476852168999999739968999044688-08788999999998419789976587899999859
Q ss_pred CCCCCCEEEECCCCHHHH-HH------HH-HHHHHHCC-CCCCEEEEE----ECC---CCC--CCHHHHHHHHHHHHHHH
Q ss_conf 556673253044432456-54------33-34433114-478148986----304---322--21023334454432320
Q gi|254781097|r 153 VLLRKIIVTGNPIRSSLI-KM------KD-IPYQSSDL-DQPFHLLVF----GGS---QGA--KVFSDIVPKSIALIPEM 214 (369)
Q Consensus 153 ~~~~k~~~~G~PvR~~~~-~~------~~-~~~~~~~~-~~~~~ILv~----GGS---~Ga--~~ln~~v~~~~~~l~~~ 214 (369)
....++.++-=|+ |. +. .. ......+. .....|-+. ++. .|. ...-+.+.+.++.+.+.
T Consensus 196 v~~~~i~~taDpA---F~l~~~~~~~~~~~~~~~~l~~~~~~~~VgisVr~~~~~~~~~~~~~~~y~~a~a~~~d~l~~~ 272 (426)
T PRK10017 196 ITTAKVEHGVDTA---WLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDE 272 (426)
T ss_pred CCCCCEEEECCCC---EECCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9978628945821---1025654332212355641365666877999970366301124410899999999999999977
Q ss_pred CCCCCEEEEEECC-----CCHHHHHHHHHHC--CCCCCCCCC---CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 2466067762025-----5167765322100--111134544---44514443004489972542023334552960487
Q gi|254781097|r 215 QRKRLVIMQQVRE-----DDKEKVQKQYDEL--GCKATLACF---FKDIERYIVEANLLICRSGALTVSEIAVIGRPAIL 284 (369)
Q Consensus 215 ~~~~~~v~~~~g~-----~~~~~~~~~~~~~--~~~~~v~~f---~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~Il 284 (369)
+..-+.+.++++. .|........... +.++.+... ..++-.+++.||++|.-==+++| =++..|+|+|-
T Consensus 273 G~~Vv~lp~~~~i~~~~~dD~~~~~~i~~~m~~~~~~~il~~~~~~~E~~~ii~~~dl~IG~RLHslI-fA~~~gvP~i~ 351 (426)
T PRK10017 273 GYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGTRLHSAI-ISMNFATPAIA 351 (426)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHH-HHHHCCCCEEE
T ss_conf 98799960566877778025999999999726876369838999989999999739229988899999-99975999698
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCE-EEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 533552489899989999988988-998000199899999999986189999999999985278327999999999999
Q gi|254781097|r 285 VPYPHSVDQDQLHNAYYLQEGGGA-KVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLA 362 (369)
Q Consensus 285 IP~p~a~~~hQ~~NA~~l~~~G~a-~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la 362 (369)
|+| ..+...++.+.|.. +.++-++++++.|...+...+.|-+.+++.-.++-+--+.+|.+.+-..|.++-
T Consensus 352 IsY-------d~K~~g~~~~lGl~~~~~di~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (426)
T PRK10017 352 INY-------EHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQTGMQMVQSVLERIG 423 (426)
T ss_pred EEE-------CHHHHHHHHHCCCCHHEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 402-------287899999759930030377669278999999999769999999999999999999999999999852
No 83
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=9.7e-05 Score=52.64 Aligned_cols=273 Identities=14% Similarity=0.145 Sum_probs=125.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (369)
-.|+-|-| |-..-|+++|+.|..-.+.+..+.. ..+.+.+.+- +...+.. ..+-++ ... .
T Consensus 4 ~aisD~Rt-Gnt~QaiaLa~~l~r~eyttk~l~~----~~l~~lP~~w---l~~yp~~------~~~~l~----~~~--~ 63 (329)
T COG3660 4 WAISDGRT-GNTHQAIALAEQLTRSEYTTKLLEY----NNLAKLPNFW---LAYYPIH------ILRELF----GPR--L 63 (329)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHCCCEEEEEEEC----CCCCCCCHHH---HHCCCCH------HHHHHH----CCC--C
T ss_conf 89615877-6389999999986046437899512----2001274466---5127627------678763----670--0
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHH--HCCCCCEEECCC-CCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCC-EE
Q ss_conf 554203444243126532102478886--234110122153-20015677889999987413432222--3556673-25
Q gi|254781097|r 87 RLIKKLKPNVVVGFGGYHSISPLLAGM--ILRIPSMVHEQN-VIMGKANRLLSWGVQIIARGLVSSQK--KVLLRKI-IV 160 (369)
Q Consensus 87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~--~l~iP~vihEqN-~v~G~~nk~l~~~a~~v~~~~~~~~~--~~~~~k~-~~ 160 (369)
....+.+||++|+-| .-+.|..+-.+ .-+ +.++|=|+ -+|+ +..|.|++.+-+-.+ ..-.+++ -.
T Consensus 64 ~r~p~~~Pdl~I~aG-rrta~l~~~lkk~~~~-~~vVqI~~Prlp~-------~~fDlvivp~HD~~~~~s~~~~Nilpi 134 (329)
T COG3660 64 SRKPEQRPDLIITAG-RRTAPLAFYLKKKFGG-IKVVQIQDPRLPY-------NHFDLVIVPYHDWREELSDQGPNILPI 134 (329)
T ss_pred CCCCCCCCCEEEECC-CCHHHHHHHHHHHCCC-CEEEEEECCCCCC-------CCCEEEECCCHHHHHHHHCCCCCEEEC
T ss_conf 017557985588615-2100789999986189-5389950799985-------302178426024666531157845542
Q ss_pred EEC--CCCHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCHHHHHHH----HHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 304--44324565433344331-14478148986304322210233344----544323202466067762025516776
Q gi|254781097|r 161 TGN--PIRSSLIKMKDIPYQSS-DLDQPFHLLVFGGSQGAKVFSDIVPK----SIALIPEMQRKRLVIMQQVREDDKEKV 233 (369)
Q Consensus 161 ~G~--PvR~~~~~~~~~~~~~~-~~~~~~~ILv~GGS~Ga~~ln~~v~~----~~~~l~~~~~~~~~v~~~~g~~~~~~~ 233 (369)
+|- +|-+.+.......++.. ...++..-++.||+-++-.+++.-.. ++....+. ...-++.....+-.+.+
T Consensus 135 ~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~--~g~~~lisfSRRTp~~~ 212 (329)
T COG3660 135 NGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN--QGGSFLISFSRRTPDTV 212 (329)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHH
T ss_conf 6887756577756458887863778774499996678877766778999999999999874--78518999606891789
Q ss_pred HHHHHH----CCCCC---CCCCCCCCCHHHHHCCCEEEECCCCHH-HHHHHHHCCCEEEEECC-CC-CCCHHHHHHHHHH
Q ss_conf 532210----01111---345444451444300448997254202-33345529604875335-52-4898999899999
Q gi|254781097|r 234 QKQYDE----LGCKA---TLACFFKDIERYIVEANLLICRSGALT-VSEIAVIGRPAILVPYP-HS-VDQDQLHNAYYLQ 303 (369)
Q Consensus 234 ~~~~~~----~~~~~---~v~~f~~~m~~~~~~aDlvIsraG~~T-i~E~~~~g~P~IlIP~p-~a-~~~hQ~~NA~~l~ 303 (369)
+..... .+.-+ +-.++- --.++|++||.+|+-+-+.+ ++|+++.|+| +++=+| .. .+-|..+ -+-|.
T Consensus 213 ~s~l~~~l~s~~~i~w~~~d~g~N-PY~~~La~Adyii~TaDSinM~sEAasTgkP-v~~~~~~~~~s~K~r~F-i~~L~ 289 (329)
T COG3660 213 KSILKNNLNSSPGIVWNNEDTGYN-PYIDMLAAADYIISTADSINMCSEAASTGKP-VFILEPPNFNSLKFRIF-IEQLV 289 (329)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCC-CHHHHHHHCCEEEEECCHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHH-HHHHH
T ss_conf 999971356684457379878988-1688885213378704301245787604997-59980698622778999-99998
Q ss_pred HCCCEEEEEH
Q ss_conf 8898899800
Q gi|254781097|r 304 EGGGAKVITE 313 (369)
Q Consensus 304 ~~G~a~~i~~ 313 (369)
+++.|...+.
T Consensus 290 eq~~AR~f~~ 299 (329)
T COG3660 290 EQKIARPFEG 299 (329)
T ss_pred HHHHCCCCCC
T ss_conf 7533152575
No 84
>KOG2941 consensus
Probab=98.24 E-value=0.00067 Score=46.76 Aligned_cols=326 Identities=17% Similarity=0.202 Sum_probs=156.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE---CHHHHHHHCCCCCCCEEEEECCCCCCCCHHH---HHHH
Q ss_conf 998876999878852562079999999996598399995---7237676244468751687525656533123---3211
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT---DRRARSFITDFPADSIYEIVSSQVRFSNPFV---FWNS 74 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 74 (369)
|++++++++..=|.=||--+..-=|..|.+.|++|..++ +...++.+. .+...++.++..++....+.. .++.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-hprI~ih~m~~l~~~~~~p~~~~l~lKv 87 (444)
T KOG2941 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-HPRIRIHGMPNLPFLQGGPRVLFLPLKV 87 (444)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 665552799993466787477899999997277278987317887688715-8963897279875257786224448999
Q ss_pred HHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH----CCCCCEE--E-------------CCCCCC---HHHH
Q ss_conf 1000121101355542034442431265321024788862----3411012--2-------------153200---1567
Q gi|254781097|r 75 LVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMI----LRIPSMV--H-------------EQNVIM---GKAN 132 (369)
Q Consensus 75 l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~----l~iP~vi--h-------------EqN~v~---G~~n 132 (369)
++.+.. ++ +.++....||+++-- .-.|.|.++++++ .+.+.+| | +|+... +..-
T Consensus 88 f~Qfl~-Ll--~aL~~~~~~~~ilvQ-NPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E 163 (444)
T KOG2941 88 FWQFLS-LL--WALFVLRPPDIILVQ-NPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLE 163 (444)
T ss_pred HHHHHH-HH--HHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999-99--999824688589972-89987347999999987366589970225789998864288870588999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC------CCCCEEEEC-----CCC--HH-HHHH------------H-----HHHHHHH-
Q ss_conf 7889999987413432222355------667325304-----443--24-5654------------3-----3344331-
Q gi|254781097|r 133 RLLSWGVQIIARGLVSSQKKVL------LRKIIVTGN-----PIR--SS-LIKM------------K-----DIPYQSS- 180 (369)
Q Consensus 133 k~l~~~a~~v~~~~~~~~~~~~------~~k~~~~G~-----PvR--~~-~~~~------------~-----~~~~~~~- 180 (369)
+++.+.++.-++-...+.+.+. ..++.+--+ |+. .+ |.+. + ...+...
T Consensus 164 ~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~ 243 (444)
T KOG2941 164 KYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKD 243 (444)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHC
T ss_conf 98613343222458889999987338740489822798889855677888865335554244224333012245676513
Q ss_pred ------CCCCCCEEEEEECCCCC---CCHHHHHHHHHHHH----H-H-HCCCCCEEEEEECCCCH-HHHHHHHHHCCC-C
Q ss_conf ------14478148986304322---21023334454432----3-2-02466067762025516-776532210011-1
Q gi|254781097|r 181 ------DLDQPFHLLVFGGSQGA---KVFSDIVPKSIALI----P-E-MQRKRLVIMQQVREDDK-EKVQKQYDELGC-K 243 (369)
Q Consensus 181 ------~~~~~~~ILv~GGS~Ga---~~ln~~v~~~~~~l----~-~-~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~-~ 243 (369)
.......+||. |.+. ..|. ++.+++... . + ...+.+ +...+|+... +...+...+.+. +
T Consensus 244 ~s~~v~~~~~~pallvs--STswTpDEdf~-ILL~AL~~y~~~~~~~~~~lP~l-lciITGKGPlkE~Y~~~I~~~~~~~ 319 (444)
T KOG2941 244 ASGDVQLLPERPALLVS--STSWTPDEDFG-ILLEALVIYEEQLYDKTHNLPSL-LCIITGKGPLKEKYSQEIHEKNLQH 319 (444)
T ss_pred CCCHHHHCCCCCEEEEE--CCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 44123314678758995--37878763278-99999986455540135799737-9999278831689999987715321
Q ss_pred CCC-CCC--CCCCHHHHHCCCEEEEC----CCC---HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEH
Q ss_conf 134-544--44514443004489972----542---02333455296048753355248989998999998898899800
Q gi|254781097|r 244 ATL-ACF--FKDIERYIVEANLLICR----SGA---LTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITE 313 (369)
Q Consensus 244 ~~v-~~f--~~~m~~~~~~aDlvIsr----aG~---~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~ 313 (369)
+.+ .++ .+|-+.+++.||+=||- +|- +-+-+.--||+|.+.+-||-- + +.+++..-|.+..
T Consensus 320 v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl----~----ELVkh~eNGlvF~- 390 (444)
T KOG2941 320 VQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCL----D----ELVKHGENGLVFE- 390 (444)
T ss_pred EEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEECCHHH----H----HHHHCCCCCEEEC-
T ss_conf 036502232110066763143134763047666764667776257874366456538----9----9985677853750-
Q ss_pred HCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHCCC
Q ss_conf 01998999999999861----89999999999985278
Q gi|254781097|r 314 NFLSPERLAEELCSAMK----KPSCLVQMAKQVSMKGK 347 (369)
Q Consensus 314 ~~~~~~~l~~~i~~ll~----d~~~l~~m~~~~~~~~~ 347 (369)
+.++|++.+.-+.+ |.+.++++++++++-..
T Consensus 391 ---Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e 425 (444)
T KOG2941 391 ---DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQE 425 (444)
T ss_pred ---CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---59999999999985499987899999986578776
No 85
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.17 E-value=0.00062 Score=47.01 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCCCCCCCC--CCCHHHHHCCCEEEE-----CCCCHHHHHHHHHCCCEEEE----ECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 111345444--451444300448997-----25420233345529604875----3355248989998999998898899
Q gi|254781097|r 242 CKATLACFF--KDIERYIVEANLLIC-----RSGALTVSEIAVIGRPAILV----PYPHSVDQDQLHNAYYLQEGGGAKV 310 (369)
Q Consensus 242 ~~~~v~~f~--~~m~~~~~~aDlvIs-----raG~~Ti~E~~~~g~P~IlI----P~p~a~~~hQ~~NA~~l~~~G~a~~ 310 (369)
.++++.... +++.++|+.|.+.|. |=| .+.-|++++|+|.|.. |.-.-.. -..+.--|++
T Consensus 305 ~~V~f~~~~s~~e~~~lL~~a~~~l~T~~nEHFG-I~pVEaMaaG~pvvA~nSGGP~edIV~--------~~~~~~tGfL 375 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASIGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPLLDIVV--------PWDGGPTGFL 375 (419)
T ss_pred CCEEEEECCCHHHHHHHHHHCEEEEECCCCCCCC-CHHHHHHHCCCCEEEECCCCCCCCEEE--------ECCCCCCCCC
T ss_conf 8769981599899999997397988557325668-589999866995799788897530776--------0589985112
Q ss_pred EEHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHC
Q ss_conf 8000199899999999986189-9999999999852
Q gi|254781097|r 311 ITENFLSPERLAEELCSAMKKP-SCLVQMAKQVSMK 345 (369)
Q Consensus 311 i~~~~~~~~~l~~~i~~ll~d~-~~l~~m~~~~~~~ 345 (369)
.. |+++.++++.++++.+ +.+.+|+++++.-
T Consensus 376 ~~----~~~e~a~a~~~~l~~~~~~~~~~~~~ar~~ 407 (419)
T cd03806 376 AS----TAEEYAEAIEKILSLSEEERLRIRRAARSS 407 (419)
T ss_pred CC----CHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 79----879999999999819987899999999999
No 86
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.08 E-value=0.0014 Score=44.52 Aligned_cols=265 Identities=12% Similarity=0.115 Sum_probs=117.0
Q ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9988-769998788525620799999999965983--9999572376762444687516875256565331233211100
Q gi|254781097|r 1 MSEN-NVILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 1 M~~~-~~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
|.++ |||||..-+-=|-+.-+..+.++|+++.++ +.+++.......+...+... .+.....+..+....+
T Consensus 1 m~~~~kkILIir~~~iGD~il~tP~i~~Lk~~~P~a~I~~l~~~~~~~ll~~~P~id--~i~~~~~k~~~~~~~~----- 73 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEIN--ALYGIKNKKAGASEKI----- 73 (352)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCC--EEEEECCCCCCHHHHH-----
T ss_conf 998997799975886049999999999999988998899997804799983399962--7988667554456779-----
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-ECCCCCCHH-HHHHHH--------HHHHHHHCCCC
Q ss_conf 01211013555420344424312653210247888623411012-215320015-677889--------99998741343
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV-HEQNVIMGK-ANRLLS--------WGVQIIARGLV 147 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vi-hEqN~v~G~-~nk~l~--------~~a~~v~~~~~ 147 (369)
+.+++..+-+++.+.|++|.+-+ +.+..+.+++++.+..+ ..-+...+. -++++. +..+..+ .+-
T Consensus 74 --~~~~~l~~~Lr~~~yD~vi~l~~--~~~~~~l~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~h~v~~~l-~ll 148 (352)
T PRK10422 74 --KNFFSLIKVLRANKYDLIVNLTD--QWMVALLVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGHVVESNL-SVL 148 (352)
T ss_pred --HHHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH-HHH
T ss_conf --99999999985548877886676--6499999998389858656665210145565531468875415999999-998
Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCH-HHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 22223556673253044432456543334433114478148986304322-210-2333445443232024660677620
Q gi|254781097|r 148 SSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGA-KVF-SDIVPKSIALIPEMQRKRLVIMQQV 225 (369)
Q Consensus 148 ~~~~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga-~~l-n~~v~~~~~~l~~~~~~~~~v~~~~ 225 (369)
.. -..+....... .+..++-...........+..++. |++-.|+.+. +.- .+...+.++.+.+. ...++..+
T Consensus 149 ~~-l~~~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~-ivi~pga~~~~K~Wp~e~~a~l~~~L~~~---g~~vvl~g 222 (352)
T PRK10422 149 TP-LGLSSLVKETT-MSYRPESWKRMRRQLDHLGVTQNY-VVIQPTARQIFKCWDNDKFSAVIDALQAR---GYEVVLTS 222 (352)
T ss_pred HH-CCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEC
T ss_conf 64-69986675556-678878999999876744888987-99967899856779999999999999847---99199972
Q ss_pred CCC--CHHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 255--167765322100111134544-----445144430044899725420233345529604875
Q gi|254781097|r 226 RED--DKEKVQKQYDELGCKATLACF-----FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 226 g~~--~~~~~~~~~~~~~~~~~v~~f-----~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
|.. +.+...+..... ....+..+ ..++..+++.||++||- =++.+.=+.++|+|+|.+
T Consensus 223 gp~~~e~~~~~~i~~~~-~~~~v~~l~G~tsL~el~ali~~a~l~I~n-DSGpmHlAaAlg~P~Val 287 (352)
T PRK10422 223 GPAKDDLACVNEIAQGC-QTPPVTALAGKTTFPELGALIDHAQLFIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCEECCCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf 89889999999999746-798704235788899999999817875605-981899999829998999
No 87
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=98.03 E-value=9e-07 Score=66.85 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=50.9
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHH-HHHC------CCCCE--EECCCCCCHHHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf 101355542034442431265321024788-8623------41101--2215320015677889999987413432222-
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLA-GMIL------RIPSM--VHEQNVIMGKANRLLSWGVQIIARGLVSSQK- 151 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~ia-A~~l------~iP~v--ihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~- 151 (369)
..+..++|++++||+|||| +.+|..++ +.++ ++|++ +-. .. ..-.-|+.+.+|.++++.+++.+
T Consensus 78 ~~~l~~~i~~~~PD~IV~T---hp~~~~~~l~~lk~~~~~~~~p~~tViTD--~~-~~H~~W~~~~~D~y~Va~ee~~~~ 151 (169)
T pfam06925 78 ARELAALLKEFQPDIIIST---HPLPAAVPLSVLKSKGLLKRVLVVTVVTD--FR-TCHPFWLHPEIDRYYVPSKEVKKE 151 (169)
T ss_pred HHHHHHHHHHHCCCEEEEC---CHHHHHHHHHHHHHCCCCCCCCEEEEECC--CC-CCCCCCCCCCCCEEEECCHHHHHH
T ss_conf 9999999998493999999---76266789999998387889978999898--86-665781689999899799999999
Q ss_pred ----CCCCCCCEEEECCC
Q ss_conf ----35566732530444
Q gi|254781097|r 152 ----KVLLRKIIVTGNPI 165 (369)
Q Consensus 152 ----~~~~~k~~~~G~Pv 165 (369)
+.+.+|+.++|+||
T Consensus 152 l~~~Gi~~~kI~vtGIPV 169 (169)
T pfam06925 152 ALEKGIDPSNIKVTGIPV 169 (169)
T ss_pred HHHCCCCHHHEEEECCCC
T ss_conf 998599988978837459
No 88
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.002 Score=43.49 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=116.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEE--EEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 7699987885256207999999999659839--99957237676244468751687525656533123321110001211
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAV--YLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
++|++..=.-=|-+.=+.++-..|++..+++ .+++.......+...+...- +........+ .-+...
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~--vi~~~~~~~~---------~~~~~~ 70 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDK--VIIIDKKKKG---------LGLKER 70 (334)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHE--EEECCCCCCC---------HHHHHH
T ss_conf 07999955740137769999999998789977999955431467755952416--8511211212---------138999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-C-CCCCCHHHHHHHH--------HHHHHHHCCCCCCCCC
Q ss_conf 0135554203444243126532102478886234110122-1-5320015677889--------9999874134322223
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVH-E-QNVIMGKANRLLS--------WGVQIIARGLVSSQKK 152 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vih-E-qN~v~G~~nk~l~--------~~a~~v~~~~~~~~~~ 152 (369)
.+..+.+++.+.|+|+-.-|- +-..+.++..++|..+- . ..+.-+..+++.. ...+.+...+.+....
T Consensus 71 ~~l~~~lr~~~yD~vidl~~~--~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (334)
T COG0859 71 LALLRTLRKERYDAVIDLQGL--LKSALLALLLGIPFRIGFDKKSARELLLNKFYPRLDKPEGQHVVERYLALLEDLGLY 148 (334)
T ss_pred HHHHHHHCCCCCCEEEECHHH--HHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999998314686789974025--889999997389836314507777777763024456540245999999998760798
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEEC-CCCC-CCHH-HHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 55667325304443245654333443311447--814898630-4322-2102-33344544323202466067762025
Q gi|254781097|r 153 VLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQ--PFHLLVFGG-SQGA-KVFS-DIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 153 ~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~--~~~ILv~GG-S~Ga-~~ln-~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
.+...-.....+. ........... ++.|++..| |.|. +... +...+.++.+.+.. ++|+..+++
T Consensus 149 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~ 217 (334)
T COG0859 149 PPPEPQLDFPLPR--------PPIELAKNLAKFDRPYIVINPGASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGP 217 (334)
T ss_pred CCCCCCCCCCCCC--------CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC---CEEEEEECH
T ss_conf 7667755545554--------78889865420379879996473466778899999999999999769---989994087
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 5167765322100111134544--445144430044899725420233345529604875
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
.+.+.........+....+.+- .+++..+++.||++||-- ++-+.=+.++|+|+|.+
T Consensus 218 ~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~D-Sg~~HlAaA~~~P~I~i 276 (334)
T COG0859 218 DEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGND-SGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCC-CHHHHHHHHCCCCEEEE
T ss_conf 899999999973676612179999999999996698999148-87999998739988999
No 89
>pfam04464 Glyphos_transf CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.
Probab=97.98 E-value=8.9e-05 Score=52.90 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH----HHHHCCCEEEEEHHCCC
Q ss_conf 11134544445144430044899725420233345529604875335524898999899----99988988998000199
Q gi|254781097|r 242 CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY----YLQEGGGAKVITENFLS 317 (369)
Q Consensus 242 ~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~----~l~~~G~a~~i~~~~~~ 317 (369)
.++....-..++.++|..||++||=- +++..|.+.+++|.|+.++ |-+++.+.+ -+.+.+.|-++. +
T Consensus 69 ~~~~~~~~~~di~~ll~~aDiLITDY-SSi~fD~lll~kPii~~~~----D~~~Y~~~rg~~~d~~~~~~g~~v~----~ 139 (186)
T pfam04464 69 SDVIDVSDYSDIQDLFLASDILITDY-SSVFFDFALLDKPIIFYAP----DLEEYRELRGFYFDYEKEAPGPVVK----T 139 (186)
T ss_pred CCEEECCCCCCHHHHHHHHCEEEEEH-HHHHHHHHHHCCCEEEEEC----CHHHHHHCCCCCCCHHHCCCCCEEC----C
T ss_conf 76797889858999999843677646-8899999987997899818----7899975258610587807876259----8
Q ss_pred HHHHHHHHHHHHCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8999999999861899----999999999852783279999999999
Q gi|254781097|r 318 PERLAEELCSAMKKPS----CLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 318 ~~~l~~~i~~ll~d~~----~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
.+.|.++|...+.++. .++.+.+..-...+++|++|+++.|.+
T Consensus 140 ~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~DG~s~eRv~~~I~~ 186 (186)
T pfam04464 140 FEELLDALKNYMENDEEYAEKRRAFRDKFFPYDDGKSSERVLNRIFK 186 (186)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 99999999998757767799999999982887588089999999839
No 90
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.97 E-value=0.00076 Score=46.39 Aligned_cols=296 Identities=12% Similarity=0.090 Sum_probs=123.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHCCCCCCCEEEEECCCCCC--CCHHHHHHHHHHCCCC
Q ss_conf 69998788525620799999999965983--9999572376762444687516875256565--3312332111000121
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDRRARSFITDFPADSIYEIVSSQVRF--SNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (369)
||||..-+-=|-+.-+..+.+.|++..++ +.+++.......+...+... ++.....+. ++++... ++..
T Consensus 2 rILiIr~~~lGDvilttP~l~~Lr~~~P~a~I~~lv~~~~~~l~~~~P~id--~vi~~~~~~~~k~~~~~~-----~~~~ 74 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHSAVD--RVIPVAIRRWRKAWFSAP-----IKAE 74 (322)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCC--EEEECCCCHHHHCCCCHH-----HHHH
T ss_conf 799991675689998999999999988998899997725788751098625--887424201221223115-----7999
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHC-CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCC-CCC---CCCCC
Q ss_conf 1013555420344424312653210247888623-411012215320015677889999987413432-222---35566
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMIL-RIPSMVHEQNVIMGKANRLLSWGVQIIARGLVS-SQK---KVLLR 156 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l-~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~-~~~---~~~~~ 156 (369)
....++.++..+.|++|..-|... ...++..+. +...-...++..-+..+ |+... ..-..... ..+ .+.
T Consensus 75 ~~~~~~~lr~~~yD~vidlq~~~r-sa~l~~~~~~~~r~g~~~~~~r~~~~~-~~~~~--~~~~~~~~h~v~r~~~l~-- 148 (322)
T PRK10964 75 RKAFRRALQAEQYDAVIDAQGLVK-SAALVTRLAHGVKHGMDWQSAREPLAS-LFYNR--KHHIAKQQHAVERTRELF-- 148 (322)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHH-HHHHHHHHCCCCEECCCCCCCCCCHHH-HHCCC--CCCCCCCCCHHHHHHHHH--
T ss_conf 999999987458979998853177-899999863686104664334440145-43035--306873103999999999--
Q ss_pred CCEEEECCCCH---HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEEC-CCCHH
Q ss_conf 73253044432---4565433344331144781489863043222102-3334454432320246606776202-55167
Q gi|254781097|r 157 KIIVTGNPIRS---SLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS-DIVPKSIALIPEMQRKRLVIMQQVR-EDDKE 231 (369)
Q Consensus 157 k~~~~G~PvR~---~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln-~~v~~~~~~l~~~~~~~~~v~~~~g-~~~~~ 231 (369)
..-.|.|... ++...+.........+++..+++-|+|...+.-. +...+.++.+.+ ....|+...| +.+.+
T Consensus 149 -~~~lg~~~p~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~s~~~K~Wp~e~f~~La~~L~~---~g~~v~l~~G~~~e~~ 224 (322)
T PRK10964 149 -AKSLGYSKPQTQGDYAIAQHFLTNLPADAGPYLVFLHATTRDDKHWPEAHWRELIGLLAD---SGLRIKLPWGAPHEEA 224 (322)
T ss_pred -HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHHH
T ss_conf -997499898750225665998741212569849997378741258998999999999996---7997999478989999
Q ss_pred HHHHHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE--E---C---CCCCCCHHHHHHHH
Q ss_conf 765322100111134544--445144430044899725420233345529604875--3---3---55248989998999
Q gi|254781097|r 232 KVQKQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV--P---Y---PHSVDQDQLHNAYY 301 (369)
Q Consensus 232 ~~~~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI--P---~---p~a~~~hQ~~NA~~ 301 (369)
......... ..+.+.+- ..++..+++.||++||- =++.+.=+.++|+|+|.+ | - |++ +|| ..
T Consensus 225 ~~~~i~~~~-~~v~~~g~~sL~elaall~~a~l~I~n-DSG~mHlAaAlg~P~v~LFGpT~P~~~gP~g--~~~----~~ 296 (322)
T PRK10964 225 RAKRLAEGF-DYVEVLPKMSLEEVARVLAGAKAVVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYG--KNQ----HA 296 (322)
T ss_pred HHHHHHHCC-CCCEECCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEEECCCCCCCCCCCC--CCC----EE
T ss_conf 999998069-961245899999999999709999966-9759999998399989998889940307888--882----48
Q ss_pred HHHCCCEEEEEHHCCCHHHHHHHHHHHHC
Q ss_conf 99889889980001998999999999861
Q gi|254781097|r 302 LQEGGGAKVITENFLSPERLAEELCSAMK 330 (369)
Q Consensus 302 l~~~G~a~~i~~~~~~~~~l~~~i~~ll~ 330 (369)
+...|..+ +|++++...++|++++.
T Consensus 297 ~~~~~~~~----~~~~~~~v~~~~~~~~~ 321 (322)
T PRK10964 297 CRSEGKSM----ANLSAETVFQKLETLIS 321 (322)
T ss_pred EECCCCCC----CCCCHHHHHHHHHHHHC
T ss_conf 96899870----21999999999999745
No 91
>KOG3339 consensus
Probab=97.71 E-value=0.0001 Score=52.44 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=91.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE-E--CHHHHH----HHCCCCC--CCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 699987885256207999999999659839999-5--723767----6244468--751687525656533123321110
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI-T--DRRARS----FITDFPA--DSIYEIVSSQVRFSNPFVFWNSLV 76 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~-~--~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 76 (369)
.+++..| +|||..-.+.+-+.|.++--.-.++ + |...++ +...... ..+++++. .+.-....+.+++
T Consensus 40 ~~lVvlG-SGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipR---sReVgQS~ltSv~ 115 (211)
T KOG3339 40 STLVVLG-SGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKNYEIPR---SREVGQSWLTSVF 115 (211)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHEECCH---HHHHHHHHHHHHH
T ss_conf 0899986-89768999999998875318537999658354289987331133336601134550---3564234540199
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC-----CEEECC-CC---CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 001211013555420344424312653210247888623411-----012215-32---001567788999998741343
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIP-----SMVHEQ-NV---IMGKANRLLSWGVQIIARGLV 147 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP-----~vihEq-N~---v~G~~nk~l~~~a~~v~~~~~ 147 (369)
..+.+...+..++-+.|||+|++-|--.|.|.+++|.++++- .+++++ =. .+.++.|++.+.+|...+-++
T Consensus 116 Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~~~~~~IvyvES~cRV~tlSlsGkiL~~~~d~Fivqw~ 195 (211)
T KOG3339 116 TTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILGLKSSHIVYVESICRVKTLSLSGKILYPVVDLFIVQWP 195 (211)
T ss_pred HHHHHHHHHHEEEEECCCCEEEECCCCCEEHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHH
T ss_conf 99999997723789558878997799817389999999998476751899986345760455575050668889987429
Q ss_pred CCCCCCCCCCCEEEEC
Q ss_conf 2222355667325304
Q gi|254781097|r 148 SSQKKVLLRKIIVTGN 163 (369)
Q Consensus 148 ~~~~~~~~~k~~~~G~ 163 (369)
+-..+.+ +..+.|.
T Consensus 196 ~L~~ky~--~~~~~g~ 209 (211)
T KOG3339 196 ALATKYL--RVKYFGI 209 (211)
T ss_pred HHHHHCC--CCEEEEE
T ss_conf 9998523--5200133
No 92
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.66 E-value=0.0069 Score=39.68 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHCCCCCCC-EEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 699987885256207999999999659--8399995723767624446875-1687525656533123321110001211
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRG--YAVYLITDRRARSFITDFPADS-IYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g--~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
||||.--+-=|-+.-+..+.++|+++. .++.+++.......+...+... ++.+.... .... +..+
T Consensus 1 kILii~~~~iGD~i~~~p~i~~lk~~~P~~~I~~l~~~~~~~l~~~~p~id~vi~~~~~~-----~~~~-------~~~~ 68 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLG-------LGAR 68 (279)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCC-----CCCC-------HHHH
T ss_conf 989994785039999999999999988799899998936899996399857999953543-----3347-------8999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 01355542034442431265321024788862341101221532001567788999998741343222235566732530
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTG 162 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G 162 (369)
++..+.+++.+.|+++.+.+ +....+.+.+.++|..+. +.....
T Consensus 69 ~~~~~~l~~~~~D~~i~~~~--~~~~~~~~~~~~~~~~~g-----------------------~~~~~~----------- 112 (279)
T cd03789 69 RRLARALRRRRYDLAIDLQG--SLRSALLPFLAGAPRRIG-----------------------FDGERR----------- 112 (279)
T ss_pred HHHHHHHHHCCCCEEEECCC--CHHHHHHHHHCCCCEEEE-----------------------CCCHHH-----------
T ss_conf 99999987649989998985--458999999849997996-----------------------781342-----------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-HH-HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf 4443245654333443311447814898630432221-02-333445443232024660677620255167765322100
Q gi|254781097|r 163 NPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKV-FS-DIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL 240 (369)
Q Consensus 163 ~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~-ln-~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 240 (369)
. .......+..|++-+||.+... .. +...+.++.+.+ .++.++..+++.+.+..+......
T Consensus 113 ----~----------~~~~~~~~~~i~i~~ga~~~~K~wp~~~~~~l~~~l~~---~~~~ivl~g~~~e~~~~~~i~~~~ 175 (279)
T cd03789 113 ----R----------GLLTDVVKPVVVLPPGASGPAKRWPAERFAALADRLLA---RGARVVLTGGPAERELAEEIAAAL 175 (279)
T ss_pred ----C----------CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf ----0----------33114799989995898973457989999999999985---899599934866899999999967
Q ss_pred CCCCCCCCC-----CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 111134544-----445144430044899725420233345529604875
Q gi|254781097|r 241 GCKATLACF-----FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 241 ~~~~~v~~f-----~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
+ +..+..+ ..++..+++.||++|+- =++.+.=+.++|+|+|.+
T Consensus 176 ~-~~~~~~l~g~~sl~el~~li~~a~l~I~~-DTg~~HlAaa~~~p~i~i 223 (279)
T cd03789 176 G-GPRVVNLAGKTSLRELAALLARADLVVTN-DSGPMHLAAALGTPTVAL 223 (279)
T ss_pred C-CCCEEECCCCCCHHHHHHHHHHCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf 9-99758368999999999999846833756-877999999849998999
No 93
>KOG1111 consensus
Probab=97.59 E-value=0.002 Score=43.50 Aligned_cols=316 Identities=15% Similarity=0.199 Sum_probs=150.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 87885256207999999999659839999572376762444--6875168752565653312332111000121101355
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF--PADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLR 87 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (369)
..||+--|+ .++.+.|.+.||.|.+++-..+...-.+. .+.+.|.++.....+...+ ..++..+--.+.
T Consensus 13 ~~ggveshi---y~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~------ptv~~~~Pllr~ 83 (426)
T KOG1111 13 STGGVESHI---YALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTF------PTVFSDFPLLRP 83 (426)
T ss_pred CCCCHHHHH---HHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEECCCCC------HHHHCCCHHHHH
T ss_conf 888711368---88751166518769998432367125056547726999853765546412------021046701226
Q ss_pred HHHHCCCCEEEECCCCCCH--HHHHHHHHCCCCCEE--ECCCCCCH-------HHHHHHH----HHHHHHHCCCCCCC--
Q ss_conf 5420344424312653210--247888623411012--21532001-------5677889----99998741343222--
Q gi|254781097|r 88 LIKKLKPNVVVGFGGYHSI--SPLLAGMILRIPSMV--HEQNVIMG-------KANRLLS----WGVQIIARGLVSSQ-- 150 (369)
Q Consensus 88 ii~~~kPDvVi~tGGy~s~--P~~iaA~~l~iP~vi--hEqN~v~G-------~~nk~l~----~~a~~v~~~~~~~~-- 150 (369)
++.++|..+|.+-+.|.++ -++.-|+.+|..++. |+ .-| .+|+++- ---..|+++.....
T Consensus 84 i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS---lfGfad~~si~~n~ll~~sL~~id~~IcVshtskent 160 (426)
T KOG1111 84 ILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS---LFGFADIGSILTNKLLPLSLANIDRIICVSHTSKENT 160 (426)
T ss_pred HHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC---CCCCCCHHHHHHCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 7654116899657708889999999887458259985243---1142331244211121367237880799861378861
Q ss_pred ---CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCC-CEEEEEEC---CCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf ---23556673253044432456543334433114478-14898630---432221023334454432320246606776
Q gi|254781097|r 151 ---KKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQP-FHLLVFGG---SQGAKVFSDIVPKSIALIPEMQRKRLVIMQ 223 (369)
Q Consensus 151 ---~~~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~-~~ILv~GG---S~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~ 223 (369)
..+..+|+.++.|-+-.+.+...+.. + .+.. .+|.|.+- --|+..+-+.+++..+.. +...++.
T Consensus 161 vlr~~L~p~kvsvIPnAv~~~~f~P~~~~--~--~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~-----p~vrfii 231 (426)
T KOG1111 161 VLRGALAPAKVSVIPNAVVTHTFTPDAAD--K--PSADIITIVVASRLVYRKGIDLLLEIIPSVCDKH-----PEVRFII 231 (426)
T ss_pred EEEECCCHHHEEECCCEEECCCCCCCCCC--C--CCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCC-----CCEEEEE
T ss_conf 79721477675533523540334658434--6--8887069999741111242678999999997359-----8736999
Q ss_pred -EECCC--CHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHCCCEEEECC----CCHHHHHHHHHCCCEEE-----EECCC
Q ss_conf -20255--1677653221001111345444--45144430044899725----42023334552960487-----53355
Q gi|254781097|r 224 -QVRED--DKEKVQKQYDELGCKATLACFF--KDIERYIVEANLLICRS----GALTVSEIAVIGRPAIL-----VPYPH 289 (369)
Q Consensus 224 -~~g~~--~~~~~~~~~~~~~~~~~v~~f~--~~m~~~~~~aDlvIsra----G~~Ti~E~~~~g~P~Il-----IP~p~ 289 (369)
+-|++ ++++..+.+. ...++.+.+-+ ++..++|..-|+.+--+ =++++-|++.||+|.|. || .
T Consensus 232 ~GDGPk~i~lee~lEk~~-l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGIp--e 308 (426)
T KOG1111 232 IGDGPKRIDLEEMLEKLF-LQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIP--E 308 (426)
T ss_pred ECCCCCCCHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCC--C
T ss_conf 568865021999999850-0480588614661788888763857962078888899999987079779975148866--5
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEHH--CCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2489899989999988988998000--19989999999998618999999999998-5278327999999999999855
Q gi|254781097|r 290 SVDQDQLHNAYYLQEGGGAKVITEN--FLSPERLAEELCSAMKKPSCLVQMAKQVS-MKGKPQAVLMLSDLVEKLAHVK 365 (369)
Q Consensus 290 a~~~hQ~~NA~~l~~~G~a~~i~~~--~~~~~~l~~~i~~ll~d~~~l~~m~~~~~-~~~~~~aa~~i~~~i~~la~~k 365 (369)
.-..+ -+...|. +..++.+.++|.++...|+... +..+ .+.-.++|++..+.-.+++..+
T Consensus 309 VLP~d-------------~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h---~~v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111 309 VLPED-------------MITLGEPGPDDLVGAVEKAITKLRTLPLEFH---DRVKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred CCCCC-------------CEECCCCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 48701-------------0223689857778899999987415804577---887776138989988899998876315
No 94
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0011 Score=45.33 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH----CCCEEEEEHHCCCHHHHHHHHH
Q ss_conf 451444300448997254202333455296048753355248989998999998----8988998000199899999999
Q gi|254781097|r 251 KDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE----GGGAKVITENFLSPERLAEELC 326 (369)
Q Consensus 251 ~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~----~G~a~~i~~~~~~~~~l~~~i~ 326 (369)
+.+.+.+.++|++|.-||..|= .+.-+|+|.|-+| .. +-|+ |--|-+. .|++..+.+++ +..-.....
T Consensus 303 qsfadiLH~adaalgmAGTAtE-QavGLGkPvi~fP--g~--GPQy-~pgFA~rQ~rLLG~sltlv~~~--aq~a~~~~q 374 (412)
T COG4370 303 QSFADILHAADAALGMAGTATE-QAVGLGKPVIGFP--GQ--GPQY-NPGFAERQQRLLGASLTLVRPE--AQAAAQAVQ 374 (412)
T ss_pred HHHHHHHHHHHHHHHHCCCHHH-HHHCCCCCEEECC--CC--CCCC-CHHHHHHHHHHHCCEEEECCCC--HHHHHHHHH
T ss_conf 8899999889999875441677-7633698624368--98--9875-8179999999852534541775--456899999
Q ss_pred HHHCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHH
Q ss_conf 986189999999999-985278327999999999999
Q gi|254781097|r 327 SAMKKPSCLVQMAKQ-VSMKGKPQAVLMLSDLVEKLA 362 (369)
Q Consensus 327 ~ll~d~~~l~~m~~~-~~~~~~~~aa~~i~~~i~~la 362 (369)
.++.||++++..+.| .+.++.+.|+.+|++.+.+++
T Consensus 375 ~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e~a 411 (412)
T COG4370 375 ELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELGEMA 411 (412)
T ss_pred HHHCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9844817778887534433167623789999998743
No 95
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA , . The protein from rat liver displays both epimerase and kinase activity .; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process.
Probab=96.77 E-value=0.055 Score=33.41 Aligned_cols=325 Identities=19% Similarity=0.205 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEE-ECHHH-----HHHHCCCCCC-CEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 8525620799999999965-9839999-57237-----6762444687-5168752565653312332111000121101
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNR-GYAVYLI-TDRRA-----RSFITDFPAD-SIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 13 GTGGHi~palala~~L~~~-g~~v~~~-~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
||--.......+.+++.+. +.+..++ +.... ..++..+... .-|.+..... +....... ...+..
T Consensus 8 g~~p~~~~~~p~~~~~~~~p~~~~~~~~~~~h~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~------~~~l~~ 80 (380)
T TIGR00236 8 GTRPEAIKLAPLIRALLKDPGIDWKVLHTGQHRDEEMLDQVLDLFSLPNPDYDLNIGSP-GQTLGEIT------GGLLEG 80 (380)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHH------HHHHHH
T ss_conf 67620356657899986268852256750320014678999988622575444423576-63047788------888876
Q ss_pred HHHHHHHCCCCEEEECCCCC-CHHHHHHHHHCCCCCEEECC--------CCCCHHHHHHHHH-HHHHHHCCCCCCC----
Q ss_conf 35554203444243126532-10247888623411012215--------3200156778899-9998741343222----
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYH-SISPLLAGMILRIPSMVHEQ--------NVIMGKANRLLSW-GVQIIARGLVSSQ---- 150 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~-s~P~~iaA~~l~iP~vihEq--------N~v~G~~nk~l~~-~a~~v~~~~~~~~---- 150 (369)
...++.+.+||+++--|.-. .+...++|...++|+-.-|. +-.|--.||.+.. .++..|.......
T Consensus 81 ~~~~~~~~~p~~~~~~gd~~~~~~~~l~~~~~~~~~gh~~~gl~~~~~~~p~p~~~~~~~~~~~~~~~~~p~~~~~~~l~ 160 (380)
T TIGR00236 81 LEELLLEEKPDVVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTGDLYSPFPEELNRVLTGHIAKLHFAPTELAKENLL 160 (380)
T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 78886414886789716621467778877765301013320111244557760567778988777642032156677776
Q ss_pred -CCCCCCCCEEEECCCCHHHHHHHHHH-----HHH-HCC-----CCCCEEEEEEC---CCC-CCCHHHHHHHHHHHHHHH
Q ss_conf -23556673253044432456543334-----433-114-----47814898630---432-221023334454432320
Q gi|254781097|r 151 -KKVLLRKIIVTGNPIRSSLIKMKDIP-----YQS-SDL-----DQPFHLLVFGG---SQG-AKVFSDIVPKSIALIPEM 214 (369)
Q Consensus 151 -~~~~~~k~~~~G~PvR~~~~~~~~~~-----~~~-~~~-----~~~~~ILv~GG---S~G-a~~ln~~v~~~~~~l~~~ 214 (369)
+....+++.++|+-+-+......... ... ... .+...+++++- +.| ...+.+. ...+..+.+.
T Consensus 161 ~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (380)
T TIGR00236 161 REGVEPGKIFVTGNTVIDALLTNLEIAEPSSPVLSEFGENYPFVPDDRVLLLTLHRRENVGNPEPLENI-LEAILEILEE 239 (380)
T ss_pred HCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHH-HHHHHHHHHH
T ss_conf 305554505762205677787766542101550234225677320454446540011046760146899-9999998741
Q ss_pred CCCCCEEEEEECC--CCHHH---HHHHHHHCCCCCCC---CCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEE
Q ss_conf 2466067762025--51677---65322100111134---5444451444300448997254202333455296048753
Q gi|254781097|r 215 QRKRLVIMQQVRE--DDKEK---VQKQYDELGCKATL---ACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVP 286 (369)
Q Consensus 215 ~~~~~~v~~~~g~--~~~~~---~~~~~~~~~~~~~v---~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP 286 (369)
. ....++.-... ..... +.+.+.. ..++.+ .+|. ++..++..+.++++-+|+.. -|+..+|+|++.+-
T Consensus 240 ~-~~~~~~~p~h~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~~~~~~~~~~~~l~d~gg~~-~~~~~~~~p~~~~~ 315 (380)
T TIGR00236 240 F-PDVAIVFPVHPNPKVREPEFGLYKALGD-AKRVFLIEPLGYL-DFLLLLSNAYLILTDSGGLQ-EEAPSLGKPVLVLR 315 (380)
T ss_pred C-CCCEEEEECCCCCCCCHHHHHHHHHHCC-CCCEEEECCHHHH-HHHHHHHCCEEEEECCCCCC-HHHHHCCCCEEEEE
T ss_conf 2-4303566214564210023104666325-6635775513478-88887532416873477630-01121277437750
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 35524898999899999889889980001998999999999861899999999999852783279999999999
Q gi|254781097|r 287 YPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360 (369)
Q Consensus 287 ~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~ 360 (369)
..++. -.-.+.|...++.. +.+.+...+..++.+|+..++|.+....++...+.+++.+.+..
T Consensus 316 --~~~~~------p~~~~~g~~~l~g~---~~~~~~~~~~~~l~~p~~~~~~~~~~~p~g~g~~~~~~~~~~~~ 378 (380)
T TIGR00236 316 --DTTER------PEAVEAGTNKLVGT---DKEKITKAAGRLLSDPDEYRKMSNAENPYGDGEASERIVEELLN 378 (380)
T ss_pred --CCCCC------CCHHHCCCEEEECC---CHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf --35666------42010032001046---67889999998731726788886412656774146899999860
No 96
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.75 E-value=0.056 Score=33.31 Aligned_cols=210 Identities=13% Similarity=0.152 Sum_probs=102.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 7699987885256207999999999659839999-572376762444687516875256565331233211100012110
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLI-TDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
.+|++.+ ||+ - +.+|+++|...+..+.+. ...++......... .. ..++- ..-
T Consensus 3 ~~ilvlG-GT~-D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~----~~-~~G~l----------------~~e 56 (257)
T COG2099 3 MRILLLG-GTS-D---ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP----VR-VGGFL----------------GAE 56 (257)
T ss_pred CEEEEEE-CCH-H---HHHHHHHHHCCCCCEEEEECCCCCCCCHHCCCC----EE-ECCCC----------------CHH
T ss_conf 3599982-638-9---999999862068617999703444241110588----66-52768----------------878
Q ss_pred HHHHHHHHCCCCEEEE-CCCCC---CHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 1355542034442431-26532---1024788862341101221532001567788999998741343222235566732
Q gi|254781097|r 84 ASLRLIKKLKPNVVVG-FGGYH---SISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKII 159 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~-tGGy~---s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~ 159 (369)
....+|++++.|++|- |.-|+ |--+..+|+..+||.+-.|- |+ -... .++.+
T Consensus 57 ~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR---P~-------------------~~~~--gd~~~ 112 (257)
T COG2099 57 GLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLER---PP-------------------WAPN--GDNWI 112 (257)
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEC---CC-------------------CCCC--CCCEE
T ss_conf 999999974988899788757999989999999985996799877---75-------------------5457--99669
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 53044432456543334433114478148986304322210233344544323202466067762025516776532210
Q gi|254781097|r 160 VTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDE 239 (369)
Q Consensus 160 ~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 239 (369)
.++ +..+......+.. .+||.+-||+.-.. +....+.. ++.+-.. .. .+. .....+
T Consensus 113 ~V~--------d~~ea~~~~~~~~--~rVflt~G~~~l~~--------f~~~~~~~--~~~~Rvl-p~--~~~-~~~~~~ 168 (257)
T COG2099 113 EVA--------DIEEAAEAAKQLG--RRVFLTTGRQNLAH--------FVAADAHS--HVLARVL-PP--PDV-LAKCED 168 (257)
T ss_pred EEC--------CHHHHHHHHHCCC--CCEEEECCCCCHHH--------HHCCCCCC--EEEEEEC-CC--HHH-HHHHHH
T ss_conf 845--------8999999875047--73799507521598--------86375556--4999976-94--387-787776
Q ss_pred CC---CCCCCC--CCCCCCHHHH---HCCCEEEECCCCHH------HHHHHHHCCCEEEEECC
Q ss_conf 01---111345--4444514443---00448997254202------33345529604875335
Q gi|254781097|r 240 LG---CKATLA--CFFKDIERYI---VEANLLICRSGALT------VSEIAVIGRPAILVPYP 288 (369)
Q Consensus 240 ~~---~~~~v~--~f~~~m~~~~---~~aDlvIsraG~~T------i~E~~~~g~P~IlIP~p 288 (369)
.+ .++.-. +|..++...| ..+|++|||.-|++ +.=+..+|+|.|.|=-|
T Consensus 169 ~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 169 LGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred CCCCHHHEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf 199846689823886758899999984888999826776667389899999869938999467
No 97
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.73 E-value=0.059 Score=33.19 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH----HHHHCCCEEEEEHHCCCHHHHHHHH
Q ss_conf 445144430044899725420233345529604875335524898999899----9998898899800019989999999
Q gi|254781097|r 250 FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY----YLQEGGGAKVITENFLSPERLAEEL 325 (369)
Q Consensus 250 ~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~----~l~~~G~a~~i~~~~~~~~~l~~~i 325 (369)
..++.++|..+|++||= =++...|.+.+.+|+|+ ++.|..|+...+ -++...-|.+++ |.+.+.++|
T Consensus 277 ~~di~dll~~sDiLITD-ySSv~fdf~~l~KPiif----y~~D~~~y~~~rg~~~d~~~~~Pg~~~~----~~~~li~ai 347 (388)
T COG1887 277 NADINDLLLVSDILITD-YSSVIFDFMLLDKPIIF----YTYDLEQYDELRGFYLDYKFEAPGEVVE----TQEELIDAI 347 (388)
T ss_pred CHHHHHHHHHCCEEEEC-CCCHHHHHHHHCCCEEE----EECCCHHHHHCCCHHHHHHHCCCCCHHC----CHHHHHHHH
T ss_conf 34499998754888851-63004668865596799----9647047554011244577619951103----689999987
Q ss_pred HHHHCC----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 998618----999999999998527832799999999999
Q gi|254781097|r 326 CSAMKK----PSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 326 ~~ll~d----~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
.....+ .++++...+...+...+++++++.+.+.+.
T Consensus 348 ~~~~~~~~~~~~k~~~~~~~~~~~~dg~ss~ri~~~i~~~ 387 (388)
T COG1887 348 KPYDEDGNYDLEKLRVFNDKFNSYEDGRSSERILKLIFKL 387 (388)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 7531022156888987777751234730778999998503
No 98
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.52 E-value=0.059 Score=33.15 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred CCEEEECCCCC--------CH----HHHHHHHHCCCCCEEECCCCCC--HHHHHHHHH----HHHHHHCCCCCCCCCC--
Q ss_conf 44243126532--------10----2478886234110122153200--156778899----9998741343222235--
Q gi|254781097|r 94 PNVVVGFGGYH--------SI----SPLLAGMILRIPSMVHEQNVIM--GKANRLLSW----GVQIIARGLVSSQKKV-- 153 (369)
Q Consensus 94 PDvVi~tGGy~--------s~----P~~iaA~~l~iP~vihEqN~v~--G~~nk~l~~----~a~~v~~~~~~~~~~~-- 153 (369)
-|++|.-||-. |. -.+..|+++|.|++++-|-.=| ...+|++.+ .++.+++-=..+.+.+
T Consensus 65 ~d~~I~GGG~llqD~ts~~s~~yy~~~~~la~~~gkpv~~~gqgiGP~~~~~~r~l~r~~l~~~~~i~vRD~~S~~~l~~ 144 (298)
T TIGR03609 65 ADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRRLSRWLVRRVLRGCRAISVRDAASYRLLKR 144 (298)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHH
T ss_conf 79999858541458875434789999999999829988999426887678789999999984199999778888999997
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC-C-CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 566732530444324565433344331144781489863043-2-22102333445443232024660677620255167
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQ-G-AKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKE 231 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~-G-a~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~ 231 (369)
..-++.+++=|+ |. ................|.|..=.. + .....+.+.+.+..+.+.....+..+-..+..|.+
T Consensus 145 lGv~~~l~~D~a---f~-l~~~~~~~~~~~~~~~i~v~~r~~~~~~~~~~~~~~~~l~~l~~~~g~~V~~lp~~~~~D~~ 220 (298)
T TIGR03609 145 LGIPAELAADPV---WL-LPPEPWPGGEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLP 220 (298)
T ss_pred CCCCEEEECCEE---EC-CCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 499848967713---20-57755444445679989999788887899999999999999998359869999688785499
Q ss_pred HHHHHHHHCCCCCCCCC--CCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 76532210011113454--444514443004489972542023334552960487533552489899989999988988
Q gi|254781097|r 232 KVQKQYDELGCKATLAC--FFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGA 308 (369)
Q Consensus 232 ~~~~~~~~~~~~~~v~~--f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a 308 (369)
..+...........+.. -.+++-.+++.+|++|+-==++.+ -++..|+|+|.|.| +.+...++.+.|.-
T Consensus 221 ~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH~~I-~A~~~gvP~i~isY-------~~Kv~~f~~~~G~p 291 (298)
T TIGR03609 221 LARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLHALI-LAAAAGVPFVALSY-------DPKVRAFAADAGVP 291 (298)
T ss_pred HHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCEEEEECCHHHH-HHHHCCCCEEEECC-------HHHHHHHHHHCCCC
T ss_conf 9999997578863653789999999999609989980708999-99977999899530-------79999999976999
No 99
>PRK06849 hypothetical protein; Provisional
Probab=96.49 E-value=0.056 Score=33.35 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 998876999878852562079999999996598399995723-7676244468751687525656533123321110001
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR-ARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
|++|++|||++| -..-|+.+++.|.+.||+|.+.-..+ .-....+ .-..+|.++.. +.++...
T Consensus 1 ~~~p~tvLiTg~----r~~~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr-~v~~~~~vP~P---~~d~~~y-------- 64 (387)
T PRK06849 1 ANTPKTVLITGA----RAPAALQLARSFHNAGHTVILADSLKYPLSRFSR-AVDGFYTIPSP---KWDPNAY-------- 64 (387)
T ss_pred CCCCCEEEEECC----CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH-CEEEEEECCCC---CCCHHHH--------
T ss_conf 999877999588----6078999999998789979998489877542000-01127986999---7898999--------
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHC-----CCCCEEECCCCCCHHHHHH-HHHHHHHHHCCCCCC
Q ss_conf 211013555420344424312653210247888623-----4110122153200156778-899999874134322
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMIL-----RIPSMVHEQNVIMGKANRL-LSWGVQIIARGLVSS 149 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l-----~iP~vihEqN~v~G~~nk~-l~~~a~~v~~~~~~~ 149 (369)
+-....++++++.|++|-+ |=++...|... ..+++.-+-..+--+-||+ +...+...-+..|++
T Consensus 65 --~~~Ll~Iv~~e~idl~IP~----~eev~~~a~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T 134 (387)
T PRK06849 65 --IQALLSIVKRHNIDLLIPT----CEEVFYLSLAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKT 134 (387)
T ss_pred --HHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf --9999999998389999977----768999986576447676376589999998644899999999749999988
No 100
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=96.45 E-value=0.071 Score=32.61 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=101.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEECCCC-HHHHHHHH--HHCCCCCCC-CCCCCCCHH-HHHC
Q ss_conf 1489863043222102333445443232024-6606776202551-67765322--100111134-544445144-4300
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQR-KRLVIMQQVREDD-KEKVQKQY--DELGCKATL-ACFFKDIER-YIVE 259 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~-~~~~v~~~~g~~~-~~~~~~~~--~~~~~~~~v-~~f~~~m~~-~~~~ 259 (369)
.-++-+-|.+=.+.=-+.+.+++..+.+..+ .+++| .++|... .+.++... .+.+.++.+ ..|-+.++- +++.
T Consensus 326 ~Pl~~~isRL~~QKG~Dl~~~a~~~ll~~~~~~Qlv~-lG~Gdp~le~~l~~la~~~~~p~~~~~~~~yde~LAh~iyAg 404 (517)
T TIGR02095 326 VPLFGVISRLVEQKGVDLLLAALPELLELGDFGQLVV-LGTGDPELEEALRELADHERYPGKVRVIIGYDEALAHRIYAG 404 (517)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE-EECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 5379998225624427899999999971179668999-704887999999999999637894899962587999989723
Q ss_pred CCEEEE--C--CCCHHHHHHHHHCCCEEEEECCCCCCC----HHHHHHHHHH---HCCCEEEEEHHCCCHHHHHHHHHHH
Q ss_conf 448997--2--542023334552960487533552489----8999899999---8898899800019989999999998
Q gi|254781097|r 260 ANLLIC--R--SGALTVSEIAVIGRPAILVPYPHSVDQ----DQLHNAYYLQ---EGGGAKVITENFLSPERLAEELCSA 328 (369)
Q Consensus 260 aDlvIs--r--aG~~Ti~E~~~~g~P~IlIP~p~a~~~----hQ~~NA~~l~---~~G~a~~i~~~~~~~~~l~~~i~~l 328 (369)
||++|- | +=|.|=..++..|++-|. ..++| =+..|-...+ +.+.|++.++. |++.|..+|.+.
T Consensus 405 aD~~lmPSrFEPCGL~Ql~amRYGt~PiV----r~tGGL~DTV~d~~~~~~~aP~~~~tGF~F~~~--~~~~L~~a~~rA 478 (517)
T TIGR02095 405 ADFFLMPSRFEPCGLTQLYAMRYGTVPIV----RRTGGLADTVVDADPENLAAPAGSGTGFLFEEY--DPEALLAALSRA 478 (517)
T ss_pred CCEEECCCCCCCCHHHHHHHHHCCCCEEE----ECCCCCCEEEECCCCCCCCCCCCCCCCEEECCC--CHHHHHHHHHHH
T ss_conf 77688078557312579989734995387----158895201003877644477877654172368--889999999999
Q ss_pred H---C-CHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Q ss_conf 6---1-89999999999985--27832799999999
Q gi|254781097|r 329 M---K-KPSCLVQMAKQVSM--KGKPQAVLMLSDLV 358 (369)
Q Consensus 329 l---~-d~~~l~~m~~~~~~--~~~~~aa~~i~~~i 358 (369)
+ + +|+.+++|.+++-+ ++=..+|+.=.++-
T Consensus 479 l~lY~~~~~~w~~l~~~aM~~DfSW~~sA~~Y~~lY 514 (517)
T TIGR02095 479 LRLYRQDPELWKALQKNAMSQDFSWDKSAKQYVELY 514 (517)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 998723978999999985136876105799999999
No 101
>TIGR00215 lpxB lipid-A-disaccharide synthase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process.
Probab=96.27 E-value=0.048 Score=33.77 Aligned_cols=271 Identities=19% Similarity=0.221 Sum_probs=135.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 69998788525620799999999965983999957237676244468751687525656533123321110001211013
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIAS 85 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (369)
.+.+++|.+.|.+. .-.+.+.+.+...+..+++-.+-....... ...+. ...+...+.......+..+++.-...
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~~~g~--~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 82 (393)
T TIGR00215 8 TIALVAGELSGDLL-GGGLRRQLPEHYPNARFVGLGGPRLAAEGC--ELLYD--PEELGVLGLTEVLGRLGPLLKIRKEL 82 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCEEECCCHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23221200001467-889988645321220100023313454124--55520--35665543788887778888888899
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHC----CCCCEEEC-CCCCCHHHHHH----HHHHHHHHHCCCCCCCC--CCC
Q ss_conf 555420344424312653210247888623----41101221-53200156778----89999987413432222--355
Q gi|254781097|r 86 LRLIKKLKPNVVVGFGGYHSISPLLAGMIL----RIPSMVHE-QNVIMGKANRL----LSWGVQIIARGLVSSQK--KVL 154 (369)
Q Consensus 86 ~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l----~iP~vihE-qN~v~G~~nk~----l~~~a~~v~~~~~~~~~--~~~ 154 (369)
.+.+...+||+.++.. +..++..++.... ++|++.+- +....-+-+++ +.+.++.+..-++.... ...
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~w~w~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (393)
T TIGR00215 83 VQLLKQAPPDLLVGID-APDFNLTLANELKKKDPGLKTLYYVSPSVWAWRPTKWRAKKLGKATDLLLAFLPFEKGFYDKK 161 (393)
T ss_pred HHHHHHCCCEEEEECC-CCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9875304630255403-467650123232200477514444333001025026788888887767765401034454420
Q ss_pred CCCCEEEECCCCHHHHHH-HHHH--HHHHCCCCC-CEEEEEECCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf 667325304443245654-3334--433114478-14898630432221--023334454432320246606776-2025
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKM-KDIP--YQSSDLDQP-FHLLVFGGSQGAKV--FSDIVPKSIALIPEMQRKRLVIMQ-QVRE 227 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~-~~~~--~~~~~~~~~-~~ILv~GGS~Ga~~--ln~~v~~~~~~l~~~~~~~~~v~~-~~g~ 227 (369)
.-.+.++|.|+.+++... .+.. ....+.+.. ..+.++-||.|+.. +...+.+....+.. .......+. ....
T Consensus 162 ~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 240 (393)
T TIGR00215 162 GLPCRFVGHPLLDAIPLEKPDRGSAREKLGIDHNGETLALLPGSRGSELEYLLPLFLKAAQLLEE-QLPDLKLLLPLPNK 240 (393)
T ss_pred CCCEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEHHH
T ss_conf 67502204224544321033123345651688666368883064125788876887668888764-14752122220001
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHCCCEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 5167765322100111134544445144-43004489972542023334552960487
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFFKDIER-YIVEANLLICRSGALTVSEIAVIGRPAIL 284 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~~~m~~-~~~~aDlvIsraG~~Ti~E~~~~g~P~Il 284 (369)
.....+.........+..+.....+-.. .+..+|+.+..+|..++ |+..++.|.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~p~~~ 297 (393)
T TIGR00215 241 KRGLQFERLKAEFGPDLTLHLLDGDARLTALVAADLALLASGTAAL-EAALLGTPFVL 297 (393)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH-HHHHHCCCHHH
T ss_conf 2213578888863466313542242023456554345542122456-67663374110
No 102
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=96.26 E-value=0.0099 Score=38.59 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=52.9
Q ss_pred EEEEECCCCH---HHHHHHHHHHHHHHHCCCEEEEEECH--HHHHHHCCCC---CCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6999878852---56207999999999659839999572--3767624446---87516875256565331233211100
Q gi|254781097|r 6 VILLVAGGTG---GHVFPAVALSHELKNRGYAVYLITDR--RARSFITDFP---ADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 6 ~ili~~gGTG---GHi~palala~~L~~~g~~v~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
+||++| |+| =|+ .++|.++||+|.+.-+- +-...+...+ +..+-.+ ...
T Consensus 1 ~iLVTG-GAGYIGSHt------~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv-~gD--------------- 57 (341)
T TIGR01179 1 KILVTG-GAGYIGSHT------VRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFV-EGD--------------- 57 (341)
T ss_pred CEEEEE-CCCCCHHHH------HHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEE-EEC---------------
T ss_conf 926861-466443588------788763597289981578884887500234148532058-717---------------
Q ss_pred CCCCCHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 0121101355542----0344424312653210247888623411012215320
Q gi|254781097|r 78 LWKAFIASLRLIK----KLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVI 127 (369)
Q Consensus 78 ~~~~~~~~~~ii~----~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v 127 (369)
+.-.....+++. +++||.||-|.|+.+++ -....|.=-|+.|.+
T Consensus 58 -L~D~~~l~~~f~kqql~~~idAViHFAg~~~Vg-----ESv~~Pl~YY~NNv~ 105 (341)
T TIGR01179 58 -LRDRELLRRVFEKQQLEHKIDAVIHFAGLIAVG-----ESVQKPLKYYRNNVV 105 (341)
T ss_pred -CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHHHH
T ss_conf -515799999987743116754675201121252-----557524544000468
No 103
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.20 E-value=0.021 Score=36.31 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=45.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEE--CCCCCCCCHHHHHHH---HHHCCCCCHH
Q ss_conf 87885256207999999999659839999572376762444687516875--256565331233211---1000121101
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIV--SSQVRFSNPFVFWNS---LVILWKAFIA 84 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---l~~~~~~~~~ 84 (369)
++||| |-.--.+.|++.|+++|+.+.+++-+.+.+.-. .....-. .....+.-++...+. ....-..-.+
T Consensus 58 tvGGt-GKTP~v~~la~~l~~~g~~~~IlSRGYg~~~~~----~~~v~~~~~~~~~vGDEpllla~~~~~~v~V~~~R~~ 132 (334)
T PRK00652 58 TVGGN-GKTPVVIWLAEQLQARGVKVGVVSRGYGGKSKG----YPLVLPADTTAAEVGDEPVLIAQRTGAPVAVSPDRVK 132 (334)
T ss_pred EECCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CEEEECCCCCHHHCCCHHHHHHHCCCCCEEEECCHHH
T ss_conf 87887-779999999999997699367873466765678----7276179998355186899985178983999566899
Q ss_pred HHHHHHHCCCCEEEECCCC
Q ss_conf 3555420344424312653
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGY 103 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy 103 (369)
+.+.+.+.+||+||.-.||
T Consensus 133 ~~~~l~~~~~dviIlDDGf 151 (334)
T PRK00652 133 AIKALLALGADIIILDDGL 151 (334)
T ss_pred HHHHHHHCCCCEEEECCCC
T ss_conf 9999996599999974766
No 104
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.17 E-value=0.12 Score=30.93 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCCCCCCCC--CCHHHHHCCCEEEEC--C--CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHC
Q ss_conf 1113454444--514443004489972--5--420233345529604875335524898999899999889889980001
Q gi|254781097|r 242 CKATLACFFK--DIERYIVEANLLICR--S--GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENF 315 (369)
Q Consensus 242 ~~~~v~~f~~--~m~~~~~~aDlvIsr--a--G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~ 315 (369)
.++...++.+ ++.++++.||+++.- . -+.++.|++++|+|.|.-+.+ ...+.+.+.+.++++...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~--------~~~~~~~~~~~g~~~~~~- 327 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG--------GIPEVVEDGETGLLVPPG- 327 (381)
T ss_pred CCEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCEEEECCCC--------CHHHHHCCCCEEEEECCC-
T ss_conf 87899177898999999972809991786445588999999849869995899--------868843069706998899-
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHH
Q ss_conf 998999999999861899999999999-8527832799999999999
Q gi|254781097|r 316 LSPERLAEELCSAMKKPSCLVQMAKQV-SMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 316 ~~~~~l~~~i~~ll~d~~~l~~m~~~~-~~~~~~~aa~~i~~~i~~l 361 (369)
+.+.+.+++..++++++.++.+.++. +........+++++.+.++
T Consensus 328 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (381)
T COG0438 328 -DVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLEL 373 (381)
T ss_pred -CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -9999999999998697999999999999999866999999999999
No 105
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.10 E-value=0.018 Score=36.85 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=46.1
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECC-CC--CCCCHHHHHHHH-HHCCC--CCH
Q ss_conf 8788525620799999999965983999957237676244468751687525-65--653312332111-00012--110
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSS-QV--RFSNPFVFWNSL-VILWK--AFI 83 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~l-~~~~~--~~~ 83 (369)
+.||| |-.--.+.|++.|+++|+.+.+++-+.+.+.-. ...+... .. .+.-+....+.+ ...+. .-.
T Consensus 44 t~GGt-GKTP~v~~l~~~l~~~g~~~~ilSRGYg~~~~~------~~~v~~~~~~~~~GDEp~lla~~~~~~v~V~~~R~ 116 (318)
T pfam02606 44 TVGGT-GKTPLVIALAELLRARGLRPGVLSRGYGGKSKG------PVLVDPGSSAAEVGDEPLLLARRTPVPVVVGPDRA 116 (318)
T ss_pred EECCC-CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------CEEECCCCCHHHCCCHHHHHHHHCCCCEEECCCHH
T ss_conf 45887-858999999999997699447832676765788------78971688946739699999875698599805289
Q ss_pred H-HHHHHHHCCCCEEEECCCC
Q ss_conf 1-3555420344424312653
Q gi|254781097|r 84 A-SLRLIKKLKPNVVVGFGGY 103 (369)
Q Consensus 84 ~-~~~ii~~~kPDvVi~tGGy 103 (369)
+ +..+++++.+|+||.-.||
T Consensus 117 ~a~~~l~~~~~~dviIlDDGf 137 (318)
T pfam02606 117 AAARALLEAHGADVIILDDGF 137 (318)
T ss_pred HHHHHHHHHCCCCEEEECCCC
T ss_conf 999999984899799914866
No 106
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.96 E-value=0.039 Score=34.39 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=46.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH---HHHCCCCCHHHH
Q ss_conf 87885256207999999999659839999572376762444687516875256565331233211---100012110135
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNS---LVILWKAFIASL 86 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 86 (369)
+.||| |-.--.++|+++|+++|..+-+++-+.+.+............ +..-.+.-+....+. ..-......+..
T Consensus 56 tvGGt-GKTP~vi~la~~l~~rG~~~gvvSRGYgg~~~~~~~~~~~~~--~a~~~GDEPlLlA~~t~~pv~v~~~R~~~~ 132 (336)
T COG1663 56 TVGGT-GKTPVVIWLAEALQARGVRVGVVSRGYGGKLKVVPLVDNIHT--TAAEVGDEPLLLARRTGAPVAVSPDRKDAA 132 (336)
T ss_pred EECCC-CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC--CHHHCCCHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 77789-968899999999986697367980576888765410256767--867728468887553399689864298999
Q ss_pred HHHHH--CCCCEEEECCCC
Q ss_conf 55420--344424312653
Q gi|254781097|r 87 RLIKK--LKPNVVVGFGGY 103 (369)
Q Consensus 87 ~ii~~--~kPDvVi~tGGy 103 (369)
+.+.+ ..+|+||+--|+
T Consensus 133 ~~l~~~~~~~diIi~DDG~ 151 (336)
T COG1663 133 KALLAAHLGCDIIVLDDGL 151 (336)
T ss_pred HHHHHHCCCCCEEEECCCC
T ss_conf 9998517898999976743
No 107
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=95.79 E-value=0.18 Score=29.80 Aligned_cols=209 Identities=15% Similarity=0.189 Sum_probs=96.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 69998788525620799999999965983999957237676244468751687525656533123321110001211013
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIAS 85 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (369)
+|+|.+| |+ - +..+++.|.+.|. +.++++.++..+... .....+..+.+.. .-..
T Consensus 2 ~IlilgG-T~-e---~r~la~~L~~~g~-~~v~t~~~~~~~~~~---~~~~~~~~G~l~~----------------~~~m 56 (246)
T pfam02571 2 RILILGG-TT-E---ARALAAALAAAGV-VSVVTSLAGRTAAPR---LPPLPVRVGGFGG----------------ADGL 56 (246)
T ss_pred EEEEEEE-CH-H---HHHHHHHHHHCCC-EEEEECCCHHHCCCC---CCCCCEEECCCCC----------------HHHH
T ss_conf 6999973-68-9---9999999985698-799984755443766---7885089799899----------------9999
Q ss_pred HHHHHHCCCCEEE-ECCCCCC---HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 5554203444243-1265321---02478886234110122153200156778899999874134322223556673253
Q gi|254781097|r 86 LRLIKKLKPNVVV-GFGGYHS---ISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVT 161 (369)
Q Consensus 86 ~~ii~~~kPDvVi-~tGGy~s---~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~ 161 (369)
..+++++++++|| .|..|+. --+.-||..++||++-+|-.. ....+.++.+.+
T Consensus 57 ~~~i~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipyiR~eRp~-----------------------~~~~~~d~~~~v 113 (246)
T pfam02571 57 AAYLREEGIDAVIDATHPFAAQISRNAAAACKELGVPLLRLERPA-----------------------WQPGPGDRWIYV 113 (246)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCC-----------------------CCCCCCCCEEEE
T ss_conf 999997799799989999689999999999998599689960621-----------------------267889877997
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 04443245654333443311447814898630432221023334454432320246606776202551677653221001
Q gi|254781097|r 162 GNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG 241 (369)
Q Consensus 162 G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 241 (369)
. +..+........ ...+||.+-||+. +... ..+.+ .+....|+ ..... ...+. +
T Consensus 114 ~--------s~~ea~~~l~~~-~~~~VllttG~k~---L~~f-----~~~~~-~~~~~RvL---p~~~~---~~g~~--~ 167 (246)
T pfam02571 114 D--------SLAEAAAALAEL-PGKRVFLTTGRQE---LAAF-----AALPQ-HRLLARVL---PPPEA---ALGFP--N 167 (246)
T ss_pred C--------CHHHHHHHHHHC-CCCEEEEEECCCC---HHHH-----HCCCC-CEEEEEEC---CCCCC---CCCCC--H
T ss_conf 9--------999999987646-7865898405023---8998-----53857-75999966---88654---47998--0
Q ss_pred CCCC--CCCCCCCCHHH-H--HCCCEEEECCCCHH-----HHHHHHHCCCEEEEECC
Q ss_conf 1113--45444451444-3--00448997254202-----33345529604875335
Q gi|254781097|r 242 CKAT--LACFFKDIERY-I--VEANLLICRSGALT-----VSEIAVIGRPAILVPYP 288 (369)
Q Consensus 242 ~~~~--v~~f~~~m~~~-~--~~aDlvIsraG~~T-----i~E~~~~g~P~IlIP~p 288 (369)
.++. --+|..++... | -.+|++|||-.|++ +.-+..+|+|.|+|=-|
T Consensus 168 ~~iIa~~gPfs~e~n~al~~~~~i~~lVtK~SG~~g~~~Ki~AA~~lgi~vivI~RP 224 (246)
T pfam02571 168 AEIIAARGPFSLELERALLRRHGIDVLVTKNSGGAGTYAKLAAARELGLPVIMIKRP 224 (246)
T ss_pred HCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 018990499998999999997099999992888650699999999849929999589
No 108
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=95.77 E-value=0.18 Score=29.74 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEHHCCCHHHHHHHHHHHHC
Q ss_conf 514443004489972542023334552960487533552489899989999988988-9980001998999999999861
Q gi|254781097|r 252 DIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGA-KVITENFLSPERLAEELCSAMK 330 (369)
Q Consensus 252 ~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a-~~i~~~~~~~~~l~~~i~~ll~ 330 (369)
.+-..+..+|++|+-==++.+ =+++.|+|+|.|=| |.++....++.|.- +.++..+++++.+.+.+.+.+.
T Consensus 278 ~~~~~l~~~dl~Vg~R~HsaI-~al~~g~p~i~i~Y-------~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 278 ELGGILAACDLIVGMRLHSAI-MALAFGVPAIAIAY-------DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred HHHHHHCCCCEEEEEHHHHHH-HHHHCCCCEEEEEE-------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 988775157459862168999-99865997589860-------5777899997299752224778756778999999973
Q ss_pred -CHHHHHH
Q ss_conf -8999999
Q gi|254781097|r 331 -KPSCLVQ 337 (369)
Q Consensus 331 -d~~~l~~ 337 (369)
+++.+++
T Consensus 350 ~~~~~~~~ 357 (385)
T COG2327 350 KLDELRER 357 (385)
T ss_pred CCHHHHHH
T ss_conf 45877765
No 109
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.19 Score=29.65 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCHHHHHCCCEE--EEC-----CC---CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHH
Q ss_conf 514443004489--972-----54---20233345529604875335524898999899999889889980001998999
Q gi|254781097|r 252 DIERYIVEANLL--ICR-----SG---ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERL 321 (369)
Q Consensus 252 ~m~~~~~~aDlv--Isr-----aG---~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l 321 (369)
.++..++..|+. ++| ++ .+-+.|++.||.|++.=+++ -.+-+-.-|-.+++-+ +.+.+
T Consensus 250 ~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~---------~~e~~f~pgk~~iv~~---d~kdl 317 (373)
T COG4641 250 GVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWK---------DLEKFFKPGKDIIVYQ---DSKDL 317 (373)
T ss_pred HHHHCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHH---------HHHHHCCCCHHEEEEC---CHHHH
T ss_conf 00000355443564137888761478505688876158750154278---------8987259860258963---78999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Q ss_conf 999999861899999999999852--78327999999999999
Q gi|254781097|r 322 AEELCSAMKKPSCLVQMAKQVSMK--GKPQAVLMLSDLVEKLA 362 (369)
Q Consensus 322 ~~~i~~ll~d~~~l~~m~~~~~~~--~~~~aa~~i~~~i~~la 362 (369)
.+.+..++..++.++++.+++-+- ....-.+++..++++++
T Consensus 318 ~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~ 360 (373)
T COG4641 318 KEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIA 360 (373)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999998448306899998669999874327888999999999
No 110
>KOG0853 consensus
Probab=95.69 E-value=0.036 Score=34.67 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred HHHCCCEEE-ECCC---CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCC
Q ss_conf 430044899-7254---202333455296048753355248989998999998898899800019989999999998618
Q gi|254781097|r 256 YIVEANLLI-CRSG---ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKK 331 (369)
Q Consensus 256 ~~~~aDlvI-sraG---~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d 331 (369)
+++.+..+. +-++ |.|.-|++++|+|++..- +++ -++.....--|++++..+-....+++++.++.+|
T Consensus 362 l~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~----~GG----P~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~ 433 (495)
T KOG0853 362 LAADTKGVLYQPANEHFGIVPIEAMACGLPVVATN----NGG----PAEIVVHGVTGLLIDPGQEAVAELADALLKLRRD 433 (495)
T ss_pred HHHHCCEEEECCCCCCCCCEEHHHHHCCCCEEEEC----CCC----CEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 98744357726888775633398785599889966----999----6578984885044577457789999999998139
Q ss_pred HHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999985278-----327999999999999855
Q gi|254781097|r 332 PSCLVQMAKQVSMKGK-----PQAVLMLSDLVEKLAHVK 365 (369)
Q Consensus 332 ~~~l~~m~~~~~~~~~-----~~aa~~i~~~i~~la~~k 365 (369)
|+.+.+|+++..+.-. ..=.++|++.+-+...++
T Consensus 434 p~l~~~~~~~G~krV~e~fs~~~~~~ri~~~~~~~~~~~ 472 (495)
T KOG0853 434 PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQWE 472 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999988788999998707779999999877507742
No 111
>KOG1387 consensus
Probab=95.65 E-value=0.2 Score=29.44 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCCHHHHHCCCEEEE-----CCCCHHHHHHHHHCCCEEE---------EECCCCCCCHHHHHHHHHHHCCCEEEEEHHCC
Q ss_conf 451444300448997-----2542023334552960487---------53355248989998999998898899800019
Q gi|254781097|r 251 KDIERYIVEANLLIC-----RSGALTVSEIAVIGRPAIL---------VPYPHSVDQDQLHNAYYLQEGGGAKVITENFL 316 (369)
Q Consensus 251 ~~m~~~~~~aDlvIs-----raG~~Ti~E~~~~g~P~Il---------IP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~ 316 (369)
+++-+++..|-+=|. |=| .++-|.+|+|+=.|. |-.| .|+||. |.+-+
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFG-IsVVEyMAAGlIpi~h~SgGP~lDIV~~--~~G~~t-----------GFla~---- 409 (465)
T KOG1387 348 EKLVELLGKATIGVHTMWNEHFG-ISVVEYMAAGLIPIVHNSGGPLLDIVTP--WDGETT-----------GFLAP---- 409 (465)
T ss_pred HHHHHHHCCCEEEHHHHHHHHCC-HHHHHHHHCCCEEEEECCCCCCEEEEEC--CCCCCC-----------EEECC----
T ss_conf 99999861155545244552035-5689987557268870789973236404--578601-----------01158----
Q ss_pred CHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
Q ss_conf 98999999999861-8999999999998527
Q gi|254781097|r 317 SPERLAEELCSAMK-KPSCLVQMAKQVSMKG 346 (369)
Q Consensus 317 ~~~~l~~~i~~ll~-d~~~l~~m~~~~~~~~ 346 (369)
|.++-++++.+++. |++.+..|++++|+-.
T Consensus 410 t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~ 440 (465)
T KOG1387 410 TDEEYAEAILKIVKLNYDERNMMRRNARKSL 440 (465)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 7289999999999719888888899999999
No 112
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=95.55 E-value=0.17 Score=29.96 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=39.4
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99878852562079999999996598399995723767624446875168752565653312332111000121101355
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLR 87 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (369)
++.+||| |.+ +..|+++|.++||+|..++........... ... ..+.... +.......+
T Consensus 1 ILItGas-Gfi--G~~l~~~L~~~g~~v~~~~r~~~~~~~~~~-~~~-~~~~~~d----------------l~~~~~~~~ 59 (235)
T pfam01370 1 ILVTGGT-GFI--GSALVRRLLQEGYEVIVLGRRRRSESLNTG-RIR-FRFHEGD----------------LTDPDALER 59 (235)
T ss_pred EEEECCC-CHH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CCC-CEEEEEE----------------CCCHHHHHH
T ss_conf 7997289-799--999999999787989999899730122211-467-6599965----------------889999999
Q ss_pred HHHHCCCCEEEECCCCCC
Q ss_conf 542034442431265321
Q gi|254781097|r 88 LIKKLKPNVVVGFGGYHS 105 (369)
Q Consensus 88 ii~~~kPDvVi~tGGy~s 105 (369)
++++.+||+||-..+...
T Consensus 60 ~~~~~~~D~VihlAa~~~ 77 (235)
T pfam01370 60 LLAEVQPDAVIHLAAQSG 77 (235)
T ss_pred HHHHCCCCEEEECCCCCC
T ss_conf 985389989998977478
No 113
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.41 E-value=0.071 Score=32.60 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 8788525620799999999965983999957237
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
+.||| |-.--.+.|++.|+++|+.+-+++-+.+
T Consensus 60 tvGGT-GKTP~v~~La~~L~~~G~~~~IiSRGYg 92 (332)
T PRK00313 60 TVGGT-GKTPLILWLIEHCRRRGLRVGVVSRGYG 92 (332)
T ss_pred EECCC-CHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 35887-7779999999999977996589864656
No 114
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.19 E-value=0.16 Score=30.07 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 8876999878852562079999999996598399995-723767624--4468751687525656533123321110001
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT-DRRARSFIT--DFPADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
+-.++++++||.| +-|.+.++++|++.|.+|..+- .+..+..+. ++....-..+.+..-...+...+.
T Consensus 97 ~~g~vv~VgGGvG--~Ap~~piakalk~~Gn~v~~I~Gar~k~~vilede~~~~~d~~~itTDDGS~G~kG~V------- 167 (760)
T PRK12778 97 NFGTVVCAGGGVG--VAPMLPIVQALKAAGNRVITVLAGRSKELIILEKEMRESSDEVIIMTDDGSYGRKGLV------- 167 (760)
T ss_pred CCCEEEEEECCEE--HHHHHHHHHHHHHCCCEEEEEEECCCHHHEEHHHHHHHHCCEEEEECCCCCCCCCCEE-------
T ss_conf 7873999958696--8987999999998699599998426633403599999743869998589999727456-------
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHH------HHHHHCCCCCEE
Q ss_conf 211013555420344424312653210247------888623411012
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFGGYHSISPL------LAGMILRIPSMV 121 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~------iaA~~l~iP~vi 121 (369)
.-....+|++.++|.|+.-| |.. ..++-.+||+++
T Consensus 168 --T~~L~~ll~~~~~D~v~aiG-----P~~MMk~v~~~t~~~~i~t~v 208 (760)
T PRK12778 168 --TEGVEEVIKREKVNKCFAIG-----PAIMMKFVCLLTKKYEIPTIV 208 (760)
T ss_pred --CHHHHHHHHCCCCCEEEEEC-----CHHHHHHHHHHHCCCCCCEEE
T ss_conf --67799997488987899979-----789999999872605897489
No 115
>pfam01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Probab=95.14 E-value=0.29 Score=28.31 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=48.9
Q ss_pred CEEEEEECCCCC-CCHH-HHHHHHHHHHHHHCCCCCEEEEEECCCCHHH-HHHHH-HHCCCCC-CCCCC--CCCCHHHHH
Q ss_conf 148986304322-2102-3334454432320246606776202551677-65322-1001111-34544--445144430
Q gi|254781097|r 186 FHLLVFGGSQGA-KVFS-DIVPKSIALIPEMQRKRLVIMQQVREDDKEK-VQKQY-DELGCKA-TLACF--FKDIERYIV 258 (369)
Q Consensus 186 ~~ILv~GGS~Ga-~~ln-~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~-~~~~~-~~~~~~~-~v~~f--~~~m~~~~~ 258 (369)
..|++..||.+. +... +...+.++.+.+. +..++..+|..+.+. ..+.. .....++ .+.+- ..++..+++
T Consensus 108 ~~i~i~pga~~~~K~Wp~e~f~~L~~~l~~~---~~~vvl~gg~~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~ 184 (249)
T pfam01075 108 PYIAFCPGASRPAKRWPAEHFAELAQALQER---GWQVVLFGGAEDREEEIAKRLAAGLRTPCVNLLGKTSLEQAAALLA 184 (249)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
T ss_conf 9899973878856779999999999999966---9956997386789999999998638998686269999999999998
Q ss_pred CCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 044899725420233345529604875
Q gi|254781097|r 259 EANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 259 ~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
.||++||- =++.+.=+.++|+|+|.+
T Consensus 185 ~a~l~I~n-DSGp~HiAaA~g~Pti~i 210 (249)
T pfam01075 185 GADLVVGN-DSGLMHLAAALDRPVIGL 210 (249)
T ss_pred HCCEEEEC-CCHHHHHHHHCCCCEEEE
T ss_conf 50668857-985999999839988999
No 116
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=95.11 E-value=0.026 Score=35.64 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=22.9
Q ss_pred CCEEEEECCCC---H-H--HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 87699987885---2-5--6207999999999659839999
Q gi|254781097|r 4 NNVILLVAGGT---G-G--HVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 4 ~~~ili~~gGT---G-G--Hi~palala~~L~~~g~~v~~~ 38 (369)
||+|||.|+|- | | ==|-|...+.+|++.|+++..+
T Consensus 573 Kk~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~Imi 613 (1089)
T TIGR01369 573 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMI 613 (1089)
T ss_pred CCEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEE
T ss_conf 85689987845140663120567899999998729959999
No 117
>PRK09814 hypothetical protein; Provisional
Probab=95.11 E-value=0.086 Score=32.01 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 3345529604875335524898999899999889889980001998999999999861899999999999852783
Q gi|254781097|r 273 SEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP 348 (369)
Q Consensus 273 ~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~ 348 (369)
+==+++|+|.| |. .|-..|+++++.|+|+.|+ +-+++.+.+..+ .++.+.+|.+|+++++..
T Consensus 258 SLYLaaGiPVI-VW-------~~aAla~fV~~n~lGi~V~----sL~ei~~~l~~i--t~~eY~~m~~Nv~~i~~k 319 (337)
T PRK09814 258 SLYLAAGLPVI-VW-------SKAAIADFIVENNLGFVVD----SLEELPEKINNM--TEEEYNEMVENVKKIAQK 319 (337)
T ss_pred HHHHHCCCCEE-EC-------CCHHHHHHHHHCCCEEEEC----CHHHHHHHHHHC--CHHHHHHHHHHHHHHHHH
T ss_conf 89987499889-82-------7315678999769769987----899999999858--999999999999999999
No 118
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase; InterPro: IPR012819 Sucrose occupies a central position in the metabolic pathways of all plants and plays a variety of roles including transport sugar, storage reserve, compatible solute, and signal compound . This compound is produced by the combined action of two enzymes, sucrose-phosphate synthase (2.4.1.14 from EC) and sucrose-phosphate phosphatase (3.1.3.24 from EC), via the intermediate sucrose 6-phosphate. Several studies have shown a positive correlation between sucrose-phosphate synthase activity and plant growth rate and yield in agronomically important plants, though direct proof of a causal link is lacking. This entry represents sucrose-phosphate synthase from plants, which is known to exist in multigene families in several species of both monocots and dicots. The enzyme contains an N-terminal domain glucosyltransferase domain, a variable linker region, and a C-terminal domain similar to that of sucrose-phosphate phosphatase, the next and final enzyme of sucrose biosynthesis. The C-terminal domain is likely to serve a binding - not a catalytic - function, as sucrose-phosphate phosphatase is always encoded by a distinct protein. ; GO: 0046524 sucrose-phosphate synthase activity, 0005985 sucrose metabolic process.
Probab=94.95 E-value=0.031 Score=35.14 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=56.5
Q ss_pred CCCHHHHHCCCE----EE----ECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHH
Q ss_conf 451444300448----99----7254202333455296048753355248989998999998898899800019989999
Q gi|254781097|r 251 KDIERYIVEANL----LI----CRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLA 322 (369)
Q Consensus 251 ~~m~~~~~~aDl----vI----sraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~ 322 (369)
.|+|+.|.-|-= +| -=+=|.|+-||++.|+|+|.-- |----.-...-+.| .+|++.| .+.++
T Consensus 563 sDVP~IYRLAAktKGVFINPA~~EPFGLTLIEAAa~GLP~VATK------NGGPVDI~~vL~NG--LLvDPHd--q~aIa 632 (1072)
T TIGR02468 563 SDVPDIYRLAAKTKGVFINPALIEPFGLTLIEAAAYGLPMVATK------NGGPVDIHRVLDNG--LLVDPHD--QEAIA 632 (1072)
T ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEC------CCCCHHHHHHHHCC--CCCCCCC--HHHHH
T ss_conf 88724889974279657523210456436899986399779835------86813388773178--7336776--68899
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 9999986189999999999985278
Q gi|254781097|r 323 EELCSAMKKPSCLVQMAKQVSMKGK 347 (369)
Q Consensus 323 ~~i~~ll~d~~~l~~m~~~~~~~~~ 347 (369)
+++.+|+.|+..+.+.++|.-+-.|
T Consensus 633 ~ALLkLvadK~LW~~CR~NGLkNIH 657 (1072)
T TIGR02468 633 DALLKLVADKQLWAKCRQNGLKNIH 657 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999986215778999736450245
No 119
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.95 E-value=0.22 Score=29.12 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=55.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCC----CCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 88769998788525620799999999965983999957237-67624446----87516875256565331233211100
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFP----ADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
+..++++++||.| +-|...++++|++.|.+|..+...+- +..+.+.. ....+ ....-...+...+
T Consensus 98 ~~G~Vv~VgGGvG--iApv~PiakaLke~GN~V~~IiGaR~kdlvilede~~~~sdel~--i~TDDGS~G~kG~------ 167 (993)
T PRK12775 98 KAGHVVFVGGGLG--VAPIFPQLRAFKEAGARTTAIMGFRNKDLVFWEDKFREYADDLI--ICTDDGSYGEPGF------ 167 (993)
T ss_pred CCCEEEEEECCEE--HHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHHHHCCCEE--EECCCCCCCCCCE------
T ss_conf 5773999908774--30238999999985990899984266002334999986468389--9768999875642------
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHCCCCCEEE
Q ss_conf 01211013555420344424312653210-2478886234110122
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVGFGGYHSI-SPLLAGMILRIPSMVH 122 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~tGGy~s~-P~~iaA~~l~iP~vih 122 (369)
-......++++.++|.|+..|-..-. -++...+-++||++..
T Consensus 168 ---VTd~L~elle~~k~D~V~aIGP~~MMK~vs~~Tk~ygIpT~VS 210 (993)
T PRK12775 168 ---VTAALKRVCEKQKPDKVVAIGPMPMMHACVETTRPFGVKTMVS 210 (993)
T ss_pred ---EHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEEE
T ss_conf ---0699999986689888999898899999998725259975896
No 120
>KOG0832 consensus
Probab=94.90 E-value=0.039 Score=34.39 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=17.7
Q ss_pred CEEEE-CC--CCHHHHHHHHHCCCEEEE
Q ss_conf 48997-25--420233345529604875
Q gi|254781097|r 261 NLLIC-RS--GALTVSEIAVIGRPAILV 285 (369)
Q Consensus 261 DlvIs-ra--G~~Ti~E~~~~g~P~IlI 285 (369)
|++|- -+ -.+-+-|+.-+++|.|-|
T Consensus 175 D~vvvln~~e~~sAilEA~K~~IPTIgI 202 (251)
T KOG0832 175 DLVVVLNPEENHSAILEAAKMAIPTIGI 202 (251)
T ss_pred CEEEECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 6267627544318999999707985888
No 121
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase; InterPro: IPR011848 In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis. These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This entry describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of IPR005252 from INTERPRO, corresponding to phosphopantothenate--cysteine ligase activity ..
Probab=94.72 E-value=0.04 Score=34.33 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=49.3
Q ss_pred EEEEECCCCH--------------HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 6999878852--------------56207999999999659839999572376762444687516875256565331233
Q gi|254781097|r 6 VILLVAGGTG--------------GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVF 71 (369)
Q Consensus 6 ~ili~~gGTG--------------GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (369)
+|||++|||. ||+ +..|+|.+.+.||+|.++|.+++-+.... ....+.++.... .+
T Consensus 2 k~LvTsGGTsE~ID~VRSITNHStG~L--GK~IaE~fL~~Gh~VtlvTTK~A~kP~~~-~~Lsi~Eie~~~-------~L 71 (253)
T TIGR02114 2 KILVTSGGTSEPIDNVRSITNHSTGGL--GKIIAEKFLAAGHEVTLVTTKRALKPEPQ-LNLSIKEIETVK-------DL 71 (253)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCEEEECCHH-------HH
T ss_conf 368815886366666355123376872--17999999865878978753612188888-886248642778-------99
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 211100012110135554203444243
Q gi|254781097|r 72 WNSLVILWKAFIASLRLIKKLKPNVVV 98 (369)
Q Consensus 72 ~~~l~~~~~~~~~~~~ii~~~kPDvVi 98 (369)
.. .....+.+.+-|++|
T Consensus 72 ~~----------~L~~~v~~kq~d~li 88 (253)
T TIGR02114 72 LT----------TLKELVAEKQHDILI 88 (253)
T ss_pred HH----------HHHHHCCCCCCCEEE
T ss_conf 99----------988750125543888
No 122
>pfam06032 DUF917 Protein of unknown function (DUF917). This family consists of hypothetical bacterial and archaeal proteins of unknown function.
Probab=94.62 E-value=0.24 Score=28.92 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=55.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCC-CCHHHHHHHHHHCCCCCHHHH
Q ss_conf 9987885256207999999999659839999572376762444687516875256565-331233211100012110135
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRF-SNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 86 (369)
++.+|| ||-.+.+..++++..+++..|.+++.... +... +-.......- .-....+.+-..+.+.+....
T Consensus 15 vLGsGG-GGdp~~~~l~~~~~l~~~~~v~lv~~del-------~dd~-~vv~v~~~GaP~v~~Eklp~g~e~~~a~~~le 85 (352)
T pfam06032 15 VLGTGG-GGDPYIGKLLLRAALKEGGPVELVSPDEL-------PDDD-LVVTVGMMGAPTVSIEKLPSGDEALRAVELLE 85 (352)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEHHHC-------CCCC-EEEEEEECCCCCCHHCCCCCCHHHHHHHHHHH
T ss_conf 998778-97479999999999975997699747565-------9888-89997453677101124778358999999999
Q ss_pred HHHHHCCCCEEEEC--CCCCCHHHHHHHHHCCCCCE
Q ss_conf 55420344424312--65321024788862341101
Q gi|254781097|r 87 RLIKKLKPNVVVGF--GGYHSISPLLAGMILRIPSM 120 (369)
Q Consensus 87 ~ii~~~kPDvVi~t--GGy~s~P~~iaA~~l~iP~v 120 (369)
+ ....+++.|++. ||--++-++++|..+++|++
T Consensus 86 ~-~~g~~~~ai~~~EiGG~N~~~pl~~Aa~~GlPvv 120 (352)
T pfam06032 86 K-YLGRKVDAIMPIEIGGSNSLIPLLVAARLGLPVV 120 (352)
T ss_pred H-HHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 9-8599966898564476215889999998399676
No 123
>PHA01630 putative group 1 glycosyl transferase
Probab=94.18 E-value=0.49 Score=26.74 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEE--EECCCCHH--HHHHHH
Q ss_conf 33344544323202466067762025516776532210011113454444514443004489--97254202--333455
Q gi|254781097|r 202 DIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLL--ICRSGALT--VSEIAV 277 (369)
Q Consensus 202 ~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlv--IsraG~~T--i~E~~~ 277 (369)
+.+.++++++......-..++..+ +..+.+ +......-.-.+ .+|+-++++.||+. -+|+|+-- .-|+++
T Consensus 160 Di~~~v~~elqke~~d~Y~Lvkss---n~~d~R--l~~l~gvk~plp-~dd~~~lf~~~Di~f~p~RGGaFEi~~iEAl~ 233 (333)
T PHA01630 160 DIVVKIFHELQNEGYDFYFLIKSS---NMLDPR--LFGLNGVKTPLP-DDDIYSLFAGCDILFYPVRGGAFEIPVIEALA 233 (333)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC---CCCCCE--EECCCCCCCCCC-CHHHHHHHHHCCEEEEECCCCEEECCHHHHHH
T ss_conf 889999999984578569999841---556730--212335447898-16789987406379984158603431799987
Q ss_pred HCCCEEEEECCCCCC-----CHHHHHHHHHHHCCCEEEEEHH---------CCCHHHHHHHHHHHHCC---HHHHHHHHH
Q ss_conf 296048753355248-----9899989999988988998000---------19989999999998618---999999999
Q gi|254781097|r 278 IGRPAILVPYPHSVD-----QDQLHNAYYLQEGGGAKVITEN---------FLSPERLAEELCSAMKK---PSCLVQMAK 340 (369)
Q Consensus 278 ~g~P~IlIP~p~a~~-----~hQ~~NA~~l~~~G~a~~i~~~---------~~~~~~l~~~i~~ll~d---~~~l~~m~~ 340 (369)
.|+|.|. +=..+.. +.| .++.+.+.-..+-+. |.+-+.-.+.+...|.| +++-+.+..
T Consensus 234 ~gl~~v~-te~GaWsE~~~~~~~----~~~ik~~~~~k~~~~NpiHvG~~le~~~eda~qKll~~L~n~~~ek~Ke~le~ 308 (333)
T PHA01630 234 LGLDVVV-TEKGAWSEWVLSNLD----VYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEG 308 (333)
T ss_pred CCCCEEE-CCCCCHHHHCCCCCH----HHHHHHCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 0797676-278640652475210----02212068724426797322266678768999999999862583777765553
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998527832799999999999985
Q gi|254781097|r 341 QVSMKGKPQAVLMLSDLVEKLAHV 364 (369)
Q Consensus 341 ~~~~~~~~~aa~~i~~~i~~la~~ 364 (369)
++.-.....+-..|++.++++..+
T Consensus 309 ~~~~~rEnYsy~ai~k~~~kIlek 332 (333)
T PHA01630 309 RAILYRENYSYNAIAKMWEKILEK 332 (333)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 121124534789999999999850
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.09 E-value=0.51 Score=26.63 Aligned_cols=298 Identities=15% Similarity=0.142 Sum_probs=128.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 69998788525620799999999965983--9999572376762444687516875256565331233211100012110
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
||||.--.-=|-+.=+..+.+.|+++.++ +.+++.......+...+... ++...+.. .+.. .+ ....
T Consensus 2 kILvi~~~~iGDvvlttP~l~aLr~~~P~a~I~~l~~~~~~~l~~~~P~id--~vi~~~~~-~~~~-~~-------~~~~ 70 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVN--EAIPMPLG-HGAL-EI-------GERR 70 (348)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCC--EEEECCCC-CCCH-HH-------HHHH
T ss_conf 699988876469999999999999878998899997862699995099844--89974675-5400-06-------7999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-CCCCCCHHHHH--------HHHHHHHHHHCCCCC----CC
Q ss_conf 135554203444243126532102478886234110122-15320015677--------889999987413432----22
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVH-EQNVIMGKANR--------LLSWGVQIIARGLVS----SQ 150 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vih-EqN~v~G~~nk--------~l~~~a~~v~~~~~~----~~ 150 (369)
+..+.|++.+.|+++.+-+ ++...+.+++.++|.-+- .....-++.|. +-....+.....+.. ..
T Consensus 71 ~l~~~Lr~~~yD~~i~l~~--s~rsal~~~lag~~~riG~~~~~r~~l~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 148 (348)
T PRK10916 71 RLGHSLREKRYDRAYVLPN--SFKSALVPFFAGIPHRTGWRGEMRYGLLNDLRVLDKEAWPLMVERYVALAYDKGVMRTA 148 (348)
T ss_pred HHHHHHHHHCCCEEEECCC--CHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 9999998738998999998--67999999863777212443023444316652367433407899999877540221110
Q ss_pred CCCCCCCCEEEECCC-CHHHHHH---HHHHHHHHCCC-CCCEEEEEECC-CC-CCCH-HHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 235566732530444-3245654---33344331144-78148986304-32-2210-2333445443232024660677
Q gi|254781097|r 151 KKVLLRKIIVTGNPI-RSSLIKM---KDIPYQSSDLD-QPFHLLVFGGS-QG-AKVF-SDIVPKSIALIPEMQRKRLVIM 222 (369)
Q Consensus 151 ~~~~~~k~~~~G~Pv-R~~~~~~---~~~~~~~~~~~-~~~~ILv~GGS-~G-a~~l-n~~v~~~~~~l~~~~~~~~~v~ 222 (369)
...+ .|+ ++++.-. ..........+ ++..|.+--|| .| ++.- .+...+.++.+.+. .+.|+
T Consensus 149 ~~~p--------~p~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~i~pGa~~~~~KrWp~e~fa~la~~L~~~---g~~vv 217 (348)
T PRK10916 149 QDLP--------QPLLWPQLQVSEGEKSYTCNQFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAKQLIDE---GYQVV 217 (348)
T ss_pred HCCC--------CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEE
T ss_conf 0057--------544555667898999999986487779977998168766656779889999999999968---99799
Q ss_pred EEECCCCHHHHHHHHHHCCC--C---CCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 62025516776532210011--1---134544--4451444300448997254202333455296048753355248989
Q gi|254781097|r 223 QQVREDDKEKVQKQYDELGC--K---ATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQ 295 (369)
Q Consensus 223 ~~~g~~~~~~~~~~~~~~~~--~---~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ 295 (369)
..+++.+.+.........+. + ..+.+- ..++..+++.||++||-- ++-+.=+.++|+|+|.+ | +..+.+
T Consensus 218 l~G~~~e~~~~~~i~~~l~~~~~~~~~nl~GktsL~el~ali~~a~l~I~nD-SGpmHlAaA~g~P~val-F--GpT~P~ 293 (348)
T PRK10916 218 LFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTND-SGLMHVAAALNRPLVAL-Y--GPSSPD 293 (348)
T ss_pred EEECHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCEEEECC-CHHHHHHHHCCCCEEEE-E--CCCCCC
T ss_conf 9817236999999998510331565141678899999999998559878448-82899999809988999-8--999933
Q ss_pred H-----HHHHHHH-HCCCEE----EEE------HHCCCHHHHHHHHHHHHCC
Q ss_conf 9-----9899999-889889----980------0019989999999998618
Q gi|254781097|r 296 L-----HNAYYLQ-EGGGAK----VIT------ENFLSPERLAEELCSAMKK 331 (369)
Q Consensus 296 ~-----~NA~~l~-~~G~a~----~i~------~~~~~~~~l~~~i~~ll~d 331 (369)
+ .++..+. ..++.- -++ =.+++++.+.+++.++|..
T Consensus 294 ~~~P~~~~~~vi~~~~~~~~~~~~~c~~g~~~Cm~~i~p~~V~~~~~~lL~~ 345 (348)
T PRK10916 294 FTPPLSHKARVIRLITGYHKVRKGDAAQGYHQSLIDITPQRVLEELNALLLQ 345 (348)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 1489999848998268768767889999854645409999999999999841
No 125
>PRK07208 hypothetical protein; Provisional
Probab=93.92 E-value=0.11 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8876999878852562079999999996598399995
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+|++|+|.|+|-. +++.|..|.+.|++|.++-
T Consensus 2 ~~kkv~IiGAG~~-----GL~aA~~L~~~g~~v~vlE 33 (474)
T PRK07208 2 EKKSVVIIGAGPA-----GLTAAYELVKRGYPVTILE 33 (474)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 9875999897689-----9999999986899759997
No 126
>pfam04413 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family.
Probab=93.70 E-value=0.6 Score=26.15 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=57.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCC--EEEEEE-CHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 76999878852562079999999996598--399995-723767624446875168752565653312332111000121
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGY--AVYLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~--~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
+.|-|=|. +-|-+..+..|+++|+++.+ .+.+.+ ...+...+............ .+ +-.
T Consensus 22 ~~IWiHaa-SvGE~~~~~~li~~l~~~~p~~~iliT~~T~sg~~~~~~~~~~~~~~~y-lP----------------~D~ 83 (186)
T pfam04413 22 PLIWLHAA-SVGEVLAALPLIEALKARYPGLRILVTTTTPTGAELARKLLPDRVIHQY-LP----------------LDL 83 (186)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE-CC----------------CCC
T ss_conf 88999839-8899999999999999868996299983581699999986789807997-77----------------677
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEEECCCCCC
Q ss_conf 1013555420344424312653210247-8886234110122153200
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMVHEQNVIM 128 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vihEqN~v~ 128 (369)
.....++++.++||++|-+.+=. -|-+ ..++..+||+++. |+..
T Consensus 84 ~~~~~~fl~~~~P~~~i~~e~Ei-WPnli~~~~~~~ip~~li--nar~ 128 (186)
T pfam04413 84 PGAVRRFLKHWRPDLLVIVETEL-WPNLIAAAKKRGIPVVLV--NARL 128 (186)
T ss_pred HHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHCCCCEEEE--ECCC
T ss_conf 79999999985998899986132-099999999879999999--7776
No 127
>KOG4626 consensus
Probab=93.56 E-value=0.63 Score=25.98 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHCCCEEEEC---CCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCH
Q ss_conf 43004489972---542023334552960487533552489899989999988988998000199899999999986189
Q gi|254781097|r 256 YIVEANLLICR---SGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKP 332 (369)
Q Consensus 256 ~~~~aDlvIsr---aG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~ 332 (369)
..+-+|+..-. .|.+|-+|.+..|+|||-.|...-+ -.--+..+...|++.+|.. +.++..+.-.+|-.|.
T Consensus 832 r~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lA---srVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd~ 905 (966)
T KOG4626 832 RGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLA---SRVAASLLTALGLGHLIAK---NREEYVQIAVRLATDK 905 (966)
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEECCCHHHH---HHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHHCCH
T ss_conf 655665201576758866552331037742633508889---8989999998162888751---2899999999860577
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999852
Q gi|254781097|r 333 SCLVQMAKQVSMK 345 (369)
Q Consensus 333 ~~l~~m~~~~~~~ 345 (369)
++++.++...++.
T Consensus 906 ~~L~~lr~~l~~~ 918 (966)
T KOG4626 906 EYLKKLRAKLRKA 918 (966)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 128
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.45 E-value=0.21 Score=29.27 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988769998788525620799999999965983999957
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+..+||.+.+||++|= +.+++++|.+.|++|.+...
T Consensus 1 M~~~~KValVTGgs~GI---G~aia~~la~~Ga~V~i~~~ 37 (259)
T PRK12745 1 MKSTRPVALVTGGRRGI---GLGIALALAAGGFDLAINDR 37 (259)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999996867899---99999999987998999979
No 129
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=93.39 E-value=0.28 Score=28.41 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=37.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99878852562079999999996598399995723767624446875168752565653312332111000121101355
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLR 87 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (369)
++.+|||| .+ +-.|++.|.++||+|...+-.. . . +........
T Consensus 1 ILVtG~~G-fi--Gs~l~~~L~~~g~~v~~~~r~~------------------~---------D-------~~d~~~l~~ 43 (284)
T pfam04321 1 ILVTGANG-QL--GRELTRLLAERGVEVVALDRPE------------------L---------D-------LTDPEAVAA 43 (284)
T ss_pred EEEECCCC-HH--HHHHHHHHHHCCCEEEEECCCC------------------C---------C-------CCCHHHHHH
T ss_conf 69964899-89--9999999986899899954862------------------5---------7-------889999999
Q ss_pred HHHHCCCCEEEECCCCCCHH
Q ss_conf 54203444243126532102
Q gi|254781097|r 88 LIKKLKPNVVVGFGGYHSIS 107 (369)
Q Consensus 88 ii~~~kPDvVi~tGGy~s~P 107 (369)
++++.+||+||-..++..+.
T Consensus 44 ~~~~~~pd~VihlAa~~~~~ 63 (284)
T pfam04321 44 LVREARPDVVVNAAAYTAVD 63 (284)
T ss_pred HHHHCCCCEEEECCCCCCCH
T ss_conf 99864997999724135556
No 130
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=93.38 E-value=0.67 Score=25.79 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=90.9
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCH---HHHHHHHHHC-C-CCCCCC-CC--CC
Q ss_conf 447814898630432221023334454432320246606776202--5516---7765322100-1-111345-44--44
Q gi|254781097|r 182 LDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVR--EDDK---EKVQKQYDEL-G-CKATLA-CF--FK 251 (369)
Q Consensus 182 ~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g--~~~~---~~~~~~~~~~-~-~~~~v~-~f--~~ 251 (369)
..++.+||| |-| | ..-|+ -.++++.+......++.|++--| .++. +++.+.-.+. + .++.+. .| .+
T Consensus 180 ~~~~~tIlv-GNS-g-D~sN~-Hie~L~~l~~~~~~~v~i~~Pl~Ypagn~~Yi~~V~~~g~~lFg~~~~~~L~e~l~f~ 255 (358)
T PRK02797 180 RAGKMTILV-GNS-G-DPSNR-HIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGEENLQILTEKLPFD 255 (358)
T ss_pred CCCCEEEEE-ECC-C-CCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHCCHH
T ss_conf 788559997-078-9-85400-8999999999736886999977757765999999999999865866677644218989
Q ss_pred CCHHHHHCCCEEEE----CCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHH
Q ss_conf 51444300448997----25420233345529604875335524898999899999889889980001998999999999
Q gi|254781097|r 252 DIERYIVEANLLIC----RSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCS 327 (369)
Q Consensus 252 ~m~~~~~~aDlvIs----raG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ 327 (369)
+-.++++.||+.|= --|-+|++=++.+|+|.++= .+|-+. ..|.+.|.-+....+++|...+.++=..
T Consensus 256 ~Yl~lL~~~Dl~~F~~~RQQgiGnl~lLi~lG~~~~l~-----r~n~fw---qdl~eq~vpVlf~~d~L~~~~i~e~qrq 327 (358)
T PRK02797 256 DYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLN-----RDNPFW---QDMTEQGLPVLFTGDDLDEDLVREAQRQ 327 (358)
T ss_pred HHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCEEEEE-----CCCCHH---HHHHHCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 99999973897344312466660899999779808995-----689478---8998669828953887888999999999
Q ss_pred HHC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 861-899999999999852783279999999999998
Q gi|254781097|r 328 AMK-KPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 (369)
Q Consensus 328 ll~-d~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~ 363 (369)
+.. |++. . .++.|+=.+-.-+.++..++
T Consensus 328 La~~dk~~-------I-~Ff~pny~~~W~~~l~~~~g 356 (358)
T PRK02797 328 LASVDKNI-------I-AFFSPNYLQGWRNALAIAAG 356 (358)
T ss_pred HHHCCHHH-------E-EEECCCHHHHHHHHHHHHCC
T ss_conf 98517432-------4-21187637999999988626
No 131
>PRK06847 hypothetical protein; Provisional
Probab=93.35 E-value=0.16 Score=30.09 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=29.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+..|+|+|+|||-+ ++++|-.|.++|++|.++-
T Consensus 1 m~~~kkV~IVGaG~a-----GL~lA~~L~~~Gi~v~V~E 34 (375)
T PRK06847 1 MGAVKKVLIVGGGIG-----GMSAAIALRKAGISVDLVE 34 (375)
T ss_pred CCCCCEEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 989987999996689-----9999999996799999990
No 132
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.45 Score=26.97 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9988769998788525620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+.+|.++|+|+++| = +.+++++|.++|+.|... .+..
T Consensus 1 M~m~K~vlITGassG-I---G~alA~~la~~G~~V~~~-~R~~ 38 (277)
T PRK05993 1 MDMKRSILITGCSSG-I---GAYCAHALQKRGWRVFAT-CRKP 38 (277)
T ss_pred CCCCCEEEEECCCCH-H---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 999868999256869-9---999999999879999999-7999
No 133
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=93.08 E-value=0.16 Score=30.13 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHCCCEEEECC---C-CHHHHHH
Q ss_conf 3334454432320246606776202551677653221001--11134544445144430044899725---4-2023334
Q gi|254781097|r 202 DIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG--CKATLACFFKDIERYIVEANLLICRS---G-ALTVSEI 275 (369)
Q Consensus 202 ~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~--~~~~v~~f~~~m~~~~~~aDlvIsra---G-~~Ti~E~ 275 (369)
++|.+|-+.+|+.. +-|...+|+. ..+++...+.. .=+++.|. .|+.++|+.-.|-+|-| | |+||+||
T Consensus 349 ~AVv~Ak~~~P~l~---FDIYG~GgE~--~~L~~iI~~n~A~DYI~LkGH-~~L~~vY~~YelyLsaStSEGFGLTLmEA 422 (511)
T TIGR02918 349 KAVVKAKKSVPELT---FDIYGEGGEK--SKLKKIINENQAEDYIRLKGH-KNLSEVYKDYELYLSASTSEGFGLTLMEA 422 (511)
T ss_pred HHHHHHCCCCCCEE---EEECCCCHHH--HHHHHHHHHHCCCCHHHHCCC-CCHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999513388511---0003563788--999998763120012431154-33566623232234521214411579999
Q ss_pred HHHCCCEEE--EECCCCCCCHHHHHHHHHHHCCCEEEEE-HHCCC-H----HHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 552960487--5335524898999899999889889980-00199-8----99999999986189999999999985278
Q gi|254781097|r 276 AVIGRPAIL--VPYPHSVDQDQLHNAYYLQEGGGAKVIT-ENFLS-P----ERLAEELCSAMKKPSCLVQMAKQVSMKGK 347 (369)
Q Consensus 276 ~~~g~P~Il--IP~p~a~~~hQ~~NA~~l~~~G~a~~i~-~~~~~-~----~~l~~~i~~ll~d~~~l~~m~~~~~~~~~ 347 (369)
.=-|+|||= ||| .|--|.++.-=|.+|| ..+-+ . +.|++.|..+..+.+...+|.+..=+.+.
T Consensus 423 vGSGLgmIGFDV~Y---------GN~TFI~d~~NGYLIP~~~~~~~~~~I~~~lA~~Iv~~Fv~~~~~~~~~~~SY~IA~ 493 (511)
T TIGR02918 423 VGSGLGMIGFDVNY---------GNPTFIKDNKNGYLIPIDEEEDDEDEIITALAEKIVEYFVNENDIDAFHEVSYQIAE 493 (511)
T ss_pred HHCCCCCCCCCCCC---------CCCCEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 75043323661874---------388702408884043345787887899999999989861267860026563178886
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 327999999999999
Q gi|254781097|r 348 PQAVLMLSDLVEKLA 362 (369)
Q Consensus 348 ~~aa~~i~~~i~~la 362 (369)
+--...|++.=.+|.
T Consensus 494 ~Flt~~i~~kW~~Lv 508 (511)
T TIGR02918 494 GFLTEEIVEKWKKLV 508 (511)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 631489999999985
No 134
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=93.06 E-value=0.61 Score=26.09 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.2
Q ss_pred CCCCEEEECCCC
Q ss_conf 667325304443
Q gi|254781097|r 155 LRKIIVTGNPIR 166 (369)
Q Consensus 155 ~~k~~~~G~PvR 166 (369)
.+.+.+.| |.-
T Consensus 79 Gd~v~v~G-P~G 89 (246)
T cd06218 79 GDELDVLG-PLG 89 (246)
T ss_pred CCEEEEEE-CCC
T ss_conf 79899995-357
No 135
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.05 E-value=0.58 Score=26.24 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=37.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HH--HHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 769998788525620799999999965983999957237--67--62444687516875256565331233211100012
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA--RS--FITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
|||||+|| || = -+..|++.|.++++++.++.+... .. .+.+......+.+.... +.
T Consensus 2 KkILVTGg-~G-F--IGs~Lv~~Ll~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~D----------------i~ 61 (355)
T PRK10217 2 RKILITGG-AG-F--IGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVD----------------IC 61 (355)
T ss_pred CEEEECCC-CC-H--HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECC----------------CC
T ss_conf 96999378-75-7--99999999997699889998289876525444454127871699800----------------58
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 110135554203444243126532
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVGFGGYH 104 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~tGGy~ 104 (369)
......+++++.+||+|+-+.+..
T Consensus 62 d~~~l~~~~~~~~pD~ViHlAa~~ 85 (355)
T PRK10217 62 DRAELARVFTEYQPDCVMHLAAES 85 (355)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 899999999861998899942422
No 136
>PRK12377 putative replication protein; Provisional
Probab=93.00 E-value=0.3 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 606776202551677653221001111345444451444300448997
Q gi|254781097|r 218 RLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLIC 265 (369)
Q Consensus 218 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIs 265 (369)
...|...+-.....+++..+.+.. ..+.+-..++.+||+|-
T Consensus 129 G~sVlF~t~~dLv~~L~~a~~~g~-------~~~k~l~~l~~~dLLII 169 (248)
T PRK12377 129 GRSVIVVTVPDVMSRLHESYDNGQ-------SGEKFLQELCKVDLLVL 169 (248)
T ss_pred CCEEEEEEHHHHHHHHHHHHHCCC-------CHHHHHHHHHCCCEEEE
T ss_conf 996999889999999999998485-------09999999733898986
No 137
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=92.69 E-value=0.84 Score=25.12 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCC--CCEEEEECCCCCC--CCHH---HHHHHHHHC---CC---
Q ss_conf 525620799999999965983999957237676244468--7516875256565--3312---332111000---12---
Q gi|254781097|r 14 TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPA--DSIYEIVSSQVRF--SNPF---VFWNSLVIL---WK--- 80 (369)
Q Consensus 14 TGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~---~~~~~l~~~---~~--- 80 (369)
|--++..|+.+.++...+|-.|.|++.++-.+.+..... ...|.+...++.+ .|.. ..++.+..+ ..
T Consensus 48 T~~~L~~A~~~v~~ia~~Gg~ILFVGTK~qa~~~V~~~A~r~~~~YVn~RWLGGtLTN~~TI~~sI~rL~~le~~~~~g~ 127 (332)
T PRK12311 48 TVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIKRLRKLDEVLSSGD 127 (332)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999996699799986878899999999998399657340027635559999999999999999861265
Q ss_pred --CCH-HHHHHHHH----------------CCCCEEEECCCCCCHHHHHHHHHCCCCCE-EECCCC
Q ss_conf --110-13555420----------------34442431265321024788862341101-221532
Q gi|254781097|r 81 --AFI-ASLRLIKK----------------LKPNVVVGFGGYHSISPLLAGMILRIPSM-VHEQNV 126 (369)
Q Consensus 81 --~~~-~~~~ii~~----------------~kPDvVi~tGGy~s~P~~iaA~~l~iP~v-ihEqN~ 126 (369)
.+. +..-.+.+ ..||+||-..-----.++.=|..++||++ |-.+|.
T Consensus 128 ~~~ltKKE~l~l~Re~~KL~k~lgGIk~M~~lPDlvfViD~~kE~iAV~EA~kLgIPvIaIvDTN~ 193 (332)
T PRK12311 128 AGAYTKKERLTLQRERDKLDRSLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 193 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf 233587889999879999998546254205599989996897338999999980979899973899
No 138
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.31 Score=28.09 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=28.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 99887699987885256207999999999659839999572376
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
|+++|.++|+|+++ |= +.+++++|.++|+.|... ++..+
T Consensus 1 M~~~KvalITGass-GI---G~a~A~~la~~G~~V~~~-~r~~~ 39 (270)
T PRK06179 1 MSNKKVALVTGASS-GI---GRATAEALARAGYRVFGT-SRNPA 39 (270)
T ss_pred CCCCCEEEEECCCC-HH---HHHHHHHHHHCCCEEEEE-ECCHH
T ss_conf 98995899907246-99---999999999879999999-68977
No 139
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=92.47 E-value=0.39 Score=27.44 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.3
Q ss_pred CHHHHHHHHHCCCEEEE
Q ss_conf 20233345529604875
Q gi|254781097|r 269 ALTVSEIAVIGRPAILV 285 (369)
Q Consensus 269 ~~Ti~E~~~~g~P~IlI 285 (369)
...+.|+..+|+|.|-|
T Consensus 170 ~~AV~EA~kl~IPvI~i 186 (255)
T PRK05299 170 HIAVKEARKLGIPVVAI 186 (255)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 79999999759988876
No 140
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=92.44 E-value=0.9 Score=24.90 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCEEEEECCCC-----HH-HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 87699987885-----25-6207999999999659839999572376762444-68751687525656533123321110
Q gi|254781097|r 4 NNVILLVAGGT-----GG-HVFPAVALSHELKNRGYAVYLITDRRARSFITDF-PADSIYEIVSSQVRFSNPFVFWNSLV 76 (369)
Q Consensus 4 ~~~ili~~gGT-----GG-Hi~palala~~L~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (369)
-+|||+.|+|- |+ +=|.+.--..+|++.|+++.++-+....- ..+. .....|..+.
T Consensus 7 ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv-~Td~~~ad~vY~ePl---------------- 69 (1063)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATI-MTDPEMADATYIEPI---------------- 69 (1063)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH-CCCCCCCCEEEECCC----------------
T ss_conf 788999898825103723326569999999998699899987985441-078776643787279----------------
Q ss_pred HCCCCCHHHHHHHHHCCCCEEE-ECCCCCCH
Q ss_conf 0012110135554203444243-12653210
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVV-GFGGYHSI 106 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi-~tGGy~s~ 106 (369)
..-...++|+++|||.|+ ++||=.++
T Consensus 70 ----t~e~v~~Ii~~E~Pd~il~~~GGQtaL 96 (1063)
T PRK05294 70 ----TPEFVEKIIEKERPDAILPTMGGQTAL 96 (1063)
T ss_pred ----CHHHHHHHHHHHCCCEEEECCCCHHHH
T ss_conf ----899999999975999788667780599
No 141
>PRK07236 hypothetical protein; Provisional
Probab=92.33 E-value=0.24 Score=28.92 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.0
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 998--87699987885256207999999999659839999
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
|++ ++||+|+|||-+| +++|-.|.++|++|.+.
T Consensus 1 ~~~~~~~kV~IVGaGiaG-----L~~A~~L~~~G~~v~v~ 35 (386)
T PRK07236 1 MTHMSKPRAVVVGGSLGG-----LFAANLLRRAGWDVDVF 35 (386)
T ss_pred CCCCCCCCEEEECCCHHH-----HHHHHHHHHCCCCEEEE
T ss_conf 998999968999936899-----99999998589998998
No 142
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.37 Score=27.61 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9988769998788525620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+.+|.++|+|+++ |= +.++++.|.++|+.|.... +..
T Consensus 1 M~~~KvvlITGass-GI---G~aiA~~l~~~G~~Vi~~~-R~~ 38 (277)
T PRK06180 1 MASMKTWLITGVSS-GF---GRALAQAALAAGHRVVGTV-RSA 38 (277)
T ss_pred CCCCCEEEECCCCC-HH---HHHHHHHHHHCCCEEEEEE-CCH
T ss_conf 99998899917873-99---9999999998799999998-999
No 143
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=91.93 E-value=1 Score=24.58 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=8.7
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 23334552960487
Q gi|254781097|r 271 TVSEIAVIGRPAIL 284 (369)
Q Consensus 271 Ti~E~~~~g~P~Il 284 (369)
-++||--+|+|.|.
T Consensus 172 Av~EA~kLgIPvvA 185 (227)
T TIGR01011 172 AVAEARKLGIPVVA 185 (227)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99997337997898
No 144
>PRK09620 hypothetical protein; Provisional
Probab=91.91 E-value=0.46 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCEEEEECCCCHHHHHH------------HHHHHHHHHHCCCEEEEEECHH
Q ss_conf 87699987885256207------------9999999996598399995723
Q gi|254781097|r 4 NNVILLVAGGTGGHVFP------------AVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~p------------alala~~L~~~g~~v~~~~~~~ 42 (369)
.++|||++|||--++=| +.+||+++.++|.+|+++.+..
T Consensus 3 GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 989999588875666884562776823999999999997799799994588
No 145
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=91.87 E-value=0.48 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998-8769998788525620799999999965983999957
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++ +.|+.+.+||++|= +.++++.|.++|++|.+...
T Consensus 1 m~~~~~KvalVTGa~~GI---G~aia~~la~~Ga~V~i~~~ 38 (252)
T PRK06947 1 MTNSDRKVVLITGASRGI---GRATAVLAAARGWSVGINYA 38 (252)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 999999089993883589---99999999987998999808
No 146
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=91.65 E-value=1.1 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=17.9
Q ss_pred HCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 0044899725420233345529604875
Q gi|254781097|r 258 VEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 258 ~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
...|++++ |.-.-.-+.-+|+|++-+
T Consensus 368 ~~pDl~l~--g~ker~ia~K~gIP~~~~ 393 (421)
T cd01976 368 LKPDLIGS--GIKEKYVFQKMGIPFRQM 393 (421)
T ss_pred CCCCEEEE--CCCCCHHEEECCCCEEEC
T ss_conf 39999995--476202004448885766
No 147
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.62 E-value=1.1 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
||||+| ||| .+ +..|++.|.++||+|..+.
T Consensus 2 kvLVTG-g~G-FI--Gs~l~~~Ll~~g~~V~~~d 31 (338)
T PRK10675 2 RVLVTG-GSG-YI--GSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred EEEEEC-CCC-HH--HHHHHHHHHHCCCEEEEEE
T ss_conf 199989-876-79--9999999997849899998
No 148
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=91.61 E-value=1.1 Score=24.26 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=53.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCC-CEEEEECCCCCCCCHHHHHHHHHHC---
Q ss_conf 887699987885256207999999999659839999572376762444687-5168752565653312332111000---
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPAD-SIYEIVSSQVRFSNPFVFWNSLVIL--- 78 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--- 78 (369)
-++||-+.++|=+ +|+.|.+|-+.||+|++.- ...+|+- -.|-++..-+.-.-...-++.|.++
T Consensus 141 t~~kVAViGaGPA-----GL~cA~elAk~Gh~VtvfE-------ALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~ 208 (462)
T TIGR01316 141 TKKKVAVIGAGPA-----GLACASELAKKGHEVTVFE-------ALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVK 208 (462)
T ss_pred CCCEEEEECCCCH-----HHHHHHHHHHCCCEEEEEE-------ECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 8877999846821-----4688999974798699997-------148998567536888548757889888876326637
Q ss_pred -CCCCH--H---HHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHCCCCCE
Q ss_conf -12110--1---35554203444243-1265321024788862341101
Q gi|254781097|r 79 -WKAFI--A---SLRLIKKLKPNVVV-GFGGYHSISPLLAGMILRIPSM 120 (369)
Q Consensus 79 -~~~~~--~---~~~ii~~~kPDvVi-~tGGy~s~P~~iaA~~l~iP~v 120 (369)
...++ + .-.++.++-.|.|+ +|| +-.| ++++||=.
T Consensus 209 fr~~~lvGkt~TL~eL~~~YGfDAVFIgtG--AG~p-----kl~NipG~ 250 (462)
T TIGR01316 209 FRTDYLVGKTVTLEELLEKYGFDAVFIGTG--AGLP-----KLLNIPGE 250 (462)
T ss_pred EEECCEECCCHHHHHHHHHCCCCEEEEEEC--CCCC-----EECCCCCH
T ss_conf 994437505112888887519707999506--8987-----00167843
No 149
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=91.58 E-value=0.66 Score=25.84 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCEEEEEE-CHHHHHHHCC----CCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 887699987885256207999999999-6598399995-7237676244----468751687525656533123321110
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELK-NRGYAVYLIT-DRRARSFITD----FPADSIYEIVSSQVRFSNPFVFWNSLV 76 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~-~~g~~v~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (369)
+|.+.++++-||||=++ -+++.|+ .+...|.+++ |..|.-+..+ .....-|.+...+.-+-- .-.-+.+.
T Consensus 178 dk~~~~VAg~GTGGTIt---Gi~ryLK~~~~~~~~ivGaDP~GSila~pE~LN~t~~t~Y~VEGiGyDF~P-~vlDR~v~ 253 (527)
T TIGR01137 178 DKLDMFVAGVGTGGTIT---GIARYLKDESNPKVRIVGADPEGSILAQPEELNKTGRTPYKVEGIGYDFIP-TVLDRKVV 253 (527)
T ss_pred CCCCEEEECCCCCCHHH---HHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCC-CCCCCCCC
T ss_conf 12117885057883155---455654321389338998769853321764655578983148762147768-52376525
Q ss_pred -HCC-----CCCHHHHHHHHHCC
Q ss_conf -001-----21101355542034
Q gi|254781097|r 77 -ILW-----KAFIASLRLIKKLK 93 (369)
Q Consensus 77 -~~~-----~~~~~~~~ii~~~k 93 (369)
..+ -||..+|++++++-
T Consensus 254 D~w~k~~D~~SF~maRrLi~eEG 276 (527)
T TIGR01137 254 DEWIKTDDKESFKMARRLIKEEG 276 (527)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC
T ss_conf 44688088168999999987447
No 150
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=91.58 E-value=1.1 Score=24.24 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCEEE-ECCCCCC---HHHHHHHHHCCCCCEEEC
Q ss_conf 35554203444243-1265321---024788862341101221
Q gi|254781097|r 85 SLRLIKKLKPNVVV-GFGGYHS---ISPLLAGMILRIPSMVHE 123 (369)
Q Consensus 85 ~~~ii~~~kPDvVi-~tGGy~s---~P~~iaA~~l~iP~vihE 123 (369)
...+++++++++|| .|..|+. --+.-||..++||++=.|
T Consensus 54 l~~~l~~~~i~~VIDATHPfA~~is~~a~~a~~~~~ipylR~e 96 (241)
T PRK08057 54 LAAYLREEGIDLVVDATHPYAAQISANAAAACRALGIPYLRLE 96 (241)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9999996799899989997089999999999998697079996
No 151
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.41 E-value=0.47 Score=26.84 Aligned_cols=36 Identities=36% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
||.+-|+.+.+||++|= +.++++.|.++|+.|.+..
T Consensus 1 M~~~GKvalITGas~GI---G~aiA~~la~~Ga~V~i~~ 36 (235)
T PRK07326 1 MSGNGKAALVTGGSKGI---GFAVAEALAAAGYRVAICA 36 (235)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99999899993826799---9999999998799999998
No 152
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.11 E-value=0.57 Score=26.28 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=29.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988769998788525620799999999965983999957
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+...|+.+.+|||.|= +.++++.|.+.|.+|.+...
T Consensus 1 M~~sgK~alVTGgs~GI---G~aia~~la~~Ga~V~i~~~ 37 (245)
T PRK12937 1 MTDSNKVAIVTGASRGI---GAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 99999889994857789---99999999987999999769
No 153
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=1.3 Score=23.84 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEECCCC---HHHHHHHHHHCCCCCCCCCC-----CC
Q ss_conf 144781489863043222102-3334454432320246606776202551---67765322100111134544-----44
Q gi|254781097|r 181 DLDQPFHLLVFGGSQGAKVFS-DIVPKSIALIPEMQRKRLVIMQQVREDD---KEKVQKQYDELGCKATLACF-----FK 251 (369)
Q Consensus 181 ~~~~~~~ILv~GGS~Ga~~ln-~~v~~~~~~l~~~~~~~~~v~~~~g~~~---~~~~~~~~~~~~~~~~v~~f-----~~ 251 (369)
+.++...|+.-+ +|-..++ +.+..++..+...-. -+++...+..+ ...++......+...+=.-| .+
T Consensus 425 glp~~avVf~c~--~n~~K~~pev~~~wmqIL~~vP~--Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 425 GLPEDAVVFCCF--NNYFKITPEVFALWMQILSAVPN--SVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCCCEEEEEEC--CCCCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHCCCCHHHEEECCCCCCH
T ss_conf 999980899966--88644787999999999984898--57998268986889999999999708981334626999988
Q ss_pred CCHHHHHCCCEEEEC---CCCHHHHHHHHHCCCEEEEECCCCCCCHHHH--H-HHHHHHCCCEEEEEHHCCCHHHHHHHH
Q ss_conf 514443004489972---5420233345529604875335524898999--8-999998898899800019989999999
Q gi|254781097|r 252 DIERYIVEANLLICR---SGALTVSEIAVIGRPAILVPYPHSVDQDQLH--N-AYYLQEGGGAKVITENFLSPERLAEEL 325 (369)
Q Consensus 252 ~m~~~~~~aDlvIsr---aG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~--N-A~~l~~~G~a~~i~~~~~~~~~l~~~i 325 (369)
++-+.+.-||++.-- +|++|.+|++.+|+|++--+ |.|+. | +..+...|.-..|.. +.+.-.+.-
T Consensus 501 ~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~------G~~FasR~~~si~~~agi~e~vA~---s~~dYV~~a 571 (620)
T COG3914 501 DHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV------GEQFASRNGASIATNAGIPELVAD---SRADYVEKA 571 (620)
T ss_pred HHHHHHCHHHEEEECCCCCCCCCHHHHHHHCCCEEEEC------CHHHHHHHHHHHHHHCCCCHHHCC---CHHHHHHHH
T ss_conf 99986231324652466788642677787358446511------177887605999986698024218---888999999
Q ss_pred HHHHCCHHHHHHHHHH
Q ss_conf 9986189999999999
Q gi|254781097|r 326 CSAMKKPSCLVQMAKQ 341 (369)
Q Consensus 326 ~~ll~d~~~l~~m~~~ 341 (369)
..+=+|...+++.+..
T Consensus 572 v~~g~dral~q~~r~~ 587 (620)
T COG3914 572 VAFGSDRALRQQVRAE 587 (620)
T ss_pred HHHCCCHHHHHHHHHH
T ss_conf 9853417778755799
No 154
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=90.87 E-value=0.4 Score=27.35 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 87885256207999999999659839999572376
Q gi|254781097|r 10 VAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 10 ~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
+.||| |-.=-.+.|++.|+++|+.+-+++-+.+.
T Consensus 65 tvGGT-GKTP~vi~L~~~L~~~G~k~~IlSRGYg~ 98 (339)
T PRK01906 65 TVGGT-GKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (339)
T ss_pred EECCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 76887-57799999999999769955998546455
No 155
>PRK08163 salicylate hydroxylase; Provisional
Probab=90.80 E-value=0.5 Score=26.68 Aligned_cols=34 Identities=32% Similarity=0.562 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++..+|+|+|||-+ ++++|-.|.++|++|.++-
T Consensus 1 M~~~~~V~IVGaGia-----GL~lA~~L~r~Gi~v~V~E 34 (396)
T PRK08163 1 MTHVTPVLIVGGGIG-----GLAAALALARQGIKVKLLE 34 (396)
T ss_pred CCCCCEEEEECCCHH-----HHHHHHHHHHCCCCEEEEC
T ss_conf 989984999897889-----9999999997899999991
No 156
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=90.66 E-value=0.48 Score=26.83 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCHHHHH------------HHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 88769998788525620------------79999999996598399995723
Q gi|254781097|r 3 ENNVILLVAGGTGGHVF------------PAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~------------palala~~L~~~g~~v~~~~~~~ 42 (369)
+.|+|||++|||--.+= -+.+||+++..+|++|+++.+..
T Consensus 1 kgk~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li~g~~ 52 (197)
T pfam04127 1 KGRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLIAGKG 52 (197)
T ss_pred CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9989999368864443883153626955999999999997899389972356
No 157
>pfam07429 Fuc4NAc_transf 4-alpha-L-fucosyltransferase (Fuc4NAc transferase). This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (EC 2.4.1.-) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc.
Probab=90.64 E-value=1.4 Score=23.64 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=80.0
Q ss_pred HCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--EECCCCH---HHHHHHHHHC-C-CCCCCCC-C--
Q ss_conf 11447814898630432221023334454432320246606776--2025516---7765322100-1-1113454-4--
Q gi|254781097|r 180 SDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQ--QVREDDK---EKVQKQYDEL-G-CKATLAC-F-- 249 (369)
Q Consensus 180 ~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~--~~g~~~~---~~~~~~~~~~-~-~~~~v~~-f-- 249 (369)
...+++.+||| |-| | ..-|+ -.+++..+......++.|+. +.+.++. +++.+..... + .++.+.. +
T Consensus 180 ~~~~~~ltIlv-GNS-g-D~sN~-HieaL~~i~~~fg~~vkiivPmgYPannq~Yi~~V~~~g~~lF~~~~~~iL~e~m~ 255 (361)
T pfam07429 180 KPRAGKLTILV-GNS-G-DRSNR-HIAALKAIHQQFGDNVRIIVPMGYPANNQAYIEQVRQAGLALFPAENLQILTEKLA 255 (361)
T ss_pred CCCCCCEEEEE-ECC-C-CCCHH-HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 77889538997-378-8-84404-99999999997379848999788678769999999999997648421116653189
Q ss_pred CCCCHHHHHCCCEEEE----CCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHH
Q ss_conf 4451444300448997----254202333455296048753355248989998999998898899800019989999999
Q gi|254781097|r 250 FKDIERYIVEANLLIC----RSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEEL 325 (369)
Q Consensus 250 ~~~m~~~~~~aDlvIs----raG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i 325 (369)
.++--++++.||+.+= --|-+|++=++.+|+|+++- .+|- -=+-+.+.+.-++...++++...+.++=
T Consensus 256 Fd~YL~lL~~cDlgyF~f~RQQgiGtlclLiq~GiP~vls-----r~Np---FwqDl~eq~vPvlf~~d~L~~~~v~eaq 327 (361)
T pfam07429 256 FDDYLALLRQCDLGYFIFNRQQGIGTLCLLIQAGVPCVLS-----RENP---FWQDMQEQQVPVLFTGDDLDEALIREAQ 327 (361)
T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCEEEE-----CCCC---HHHHHHHCCCCEEECCCCCCHHHHHHHH
T ss_conf 9999999974887788530023460999998479938993-----7995---5664887289777546645679999999
Q ss_pred HHHHC
Q ss_conf 99861
Q gi|254781097|r 326 CSAMK 330 (369)
Q Consensus 326 ~~ll~ 330 (369)
..+..
T Consensus 328 rQl~~ 332 (361)
T pfam07429 328 RQLAS 332 (361)
T ss_pred HHHHH
T ss_conf 99973
No 158
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=90.52 E-value=1.4 Score=23.57 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=37.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-----HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 69998788525620799999999965983999957237-----6762444687516875256565331233211100012
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-----RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
||||+| ||| -+ +-.|++.|.++++++.+..+... +.. .......-+.+.... +.
T Consensus 2 kILVTG-g~G-FI--Gs~l~~~Ll~~~~~~v~~vd~~~~~~~~~~~-~~~~~~~~~~~~~~D----------------i~ 60 (352)
T PRK10084 2 KILVTG-GAG-FI--GSAVVRHIINNTQDSVVNVDKLTYAGNLESL-ADVSDSERYVFEHAD----------------IC 60 (352)
T ss_pred EEEEEC-CHH-HH--HHHHHHHHHHCCCCEEEEEECCCCCCCHHHH-HHHHCCCCCEEEECC----------------CC
T ss_conf 799975-100-89--9999999997799889998479876778888-876308971799856----------------78
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 110135554203444243126532
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVGFGGYH 104 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~tGGy~ 104 (369)
......+++++.+||+||-+.+..
T Consensus 61 d~~~l~~~~~~~~~D~ViHlAA~~ 84 (352)
T PRK10084 61 DRAELDRIFAQHQPDAVMHLAAES 84 (352)
T ss_pred CHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999999973999999977346
No 159
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=90.47 E-value=1.4 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=6.5
Q ss_pred CCCCEEEECCCCHHH
Q ss_conf 667325304443245
Q gi|254781097|r 155 LRKIIVTGNPIRSSL 169 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~ 169 (369)
.+.+.+.| |.-..|
T Consensus 71 Gd~i~v~G-P~G~~f 84 (233)
T cd06220 71 GDKLGIRG-PYGNGF 84 (233)
T ss_pred CCEEEEEE-CCCCCC
T ss_conf 99899983-357740
No 160
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=90.33 E-value=1.4 Score=23.46 Aligned_cols=192 Identities=12% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCCEEEE-CCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 34442431-26532102478886234110122153200156778899999874134322223556673253044432456
Q gi|254781097|r 92 LKPNVVVG-FGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLI 170 (369)
Q Consensus 92 ~kPDvVi~-tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G~PvR~~~~ 170 (369)
.+..-||+ +.|-|+--+.++|+.++||..|.=+-..|- .|+ +.+ ..+...++++|. .|.
T Consensus 72 ~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~--~Kv-----~a~---------r~~GaeVil~g~----~~d 131 (347)
T COG1171 72 ERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPK--IKV-----DAT---------RGYGAEVILHGD----NFD 131 (347)
T ss_pred HHCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCH--HHH-----HHH---------HHCCCEEEEECC----CHH
T ss_conf 104756996587379999999998099879995699829--999-----999---------856988999799----779
Q ss_pred HHHHHHHHHH---C------CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 5433344331---1------447814898630432221023334454432320246606776202551677653221001
Q gi|254781097|r 171 KMKDIPYQSS---D------LDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG 241 (369)
Q Consensus 171 ~~~~~~~~~~---~------~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 241 (369)
+......+.. + +|.+ .|+-| ||. .-.|++.++++. ....++.++|......+........
T Consensus 132 da~~~a~~~a~~~G~~~i~pfD~p---~viAG-QGT-----i~lEileq~~~~--~d~v~vpvGGGGLisGia~~~k~~~ 200 (347)
T COG1171 132 DAYAAAEELAEEEGLTFVPPFDDP---DVIAG-QGT-----IALEILEQLPDL--PDAVFVPVGGGGLISGIATALKALS 200 (347)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCC---CEEEC-CCH-----HHHHHHHHCCCC--CCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 999999999997397885899994---52534-258-----999999846456--8989995386479999999999839
Q ss_pred CCCCCCCCC----CCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEHHCC
Q ss_conf 111345444----451444300448997254202333455296048753355248989998999998898-899800019
Q gi|254781097|r 242 CKATLACFF----KDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGG-AKVITENFL 316 (369)
Q Consensus 242 ~~~~v~~f~----~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~-a~~i~~~~~ 316 (369)
.+.+|.+-. +.|..-+.+-..++....-.|+++-++++.|-- +.+ +.+.+.-- -+.+
T Consensus 201 p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~-----------~tf--~i~~~~vd~~v~V----- 262 (347)
T COG1171 201 PEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGD-----------LTF--EILRELVDDIVLV----- 262 (347)
T ss_pred CCCEEEEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCH-----------HHH--HHHHHCCCCEEEE-----
T ss_conf 9972999814888589999975994353698780025420488877-----------789--9999709968998-----
Q ss_pred CHHHHHHHHHHHHCCH
Q ss_conf 9899999999986189
Q gi|254781097|r 317 SPERLAEELCSAMKKP 332 (369)
Q Consensus 317 ~~~~l~~~i~~ll~d~ 332 (369)
+.+++.+++..+.++.
T Consensus 263 ~e~ei~~am~~l~~~~ 278 (347)
T COG1171 263 DEDEICAAMRDLFERT 278 (347)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 8899999999997327
No 161
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.84 E-value=0.93 Score=24.79 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 998876999878852562079999999996598399995723
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
|.-+-|+.+.+||++|= +.++++.|.++|++|.+..++.
T Consensus 1 m~L~gK~vlITGgs~GI---G~aia~~la~~G~~V~~~~~~~ 39 (247)
T PRK05565 1 MKLMGKVAIVTGASGGI---GRAIAELLAKEGAKVVIAYDKN 39 (247)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEECCC
T ss_conf 99899889993784589---9999999998799899981799
No 162
>CHL00067 rps2 ribosomal protein S2
Probab=89.82 E-value=0.79 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 0233345529604875
Q gi|254781097|r 270 LTVSEIAVIGRPAILV 285 (369)
Q Consensus 270 ~Ti~E~~~~g~P~IlI 285 (369)
..+.||.-+|+|.|.|
T Consensus 171 ~ai~Ea~kL~IPvIai 186 (227)
T CHL00067 171 TALRECIKLGIPTISI 186 (227)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999998759998999
No 163
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=89.74 E-value=1.6 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=17.0
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 98788525620799999999965983999957
Q gi|254781097|r 9 LVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 9 i~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+.+||+| = -+-.|+++|.++|+.+.++.+
T Consensus 2 LVTGGaG-F--IGS~Lv~~Ll~~g~~~v~v~d 30 (280)
T pfam02719 2 LVTGGGG-S--IGSELCRQILKFNPKKIILFS 30 (280)
T ss_pred EEECCCC-H--HHHHHHHHHHHCCCCEEEEEE
T ss_conf 9974886-7--999999999968998899990
No 164
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.70 E-value=0.85 Score=25.08 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.++|.+|.+..
T Consensus 1 m~L~~Kv~lITGgs~GI---G~a~a~~la~~G~~V~~~~ 36 (246)
T PRK05653 1 MSLQGKTALVTGASRGI---GRAIALRLAADGARVVIYD 36 (246)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99899889993897589---9999999998799999997
No 165
>PRK05920 aromatic acid decarboxylase; Validated
Probab=89.61 E-value=1.2 Score=24.12 Aligned_cols=48 Identities=29% Similarity=0.462 Sum_probs=37.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCC
Q ss_conf 9988769998788525620799999999965983999957237676244
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITD 49 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~ 49 (369)
|++.|+|++.-.|-.|-++ |+.+.++|++.++++.++.+..+...+..
T Consensus 1 m~~mkrivvgITGASG~~y-a~rll~~L~~~~~ev~lviS~~a~~v~~~ 48 (205)
T PRK05920 1 MSKMKRIVLAITGASGAIY-GVRLLECLLAADYEVHLVISKAARKVLAT 48 (205)
T ss_pred CCCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECHHHHHHHHH
T ss_conf 9988759999865427999-99999999867998999986789999999
No 166
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.58 E-value=1.4 Score=23.55 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 887699987-885256207999999999659839999
Q gi|254781097|r 3 ENNVILLVA-GGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 3 ~~~~ili~~-gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
+-|+|.+.| ||+| .-+||+.|.++|++|...
T Consensus 7 ~~k~ih~iGigG~G-----msalA~~l~~~G~~V~gs 38 (459)
T PRK00421 7 RIKRIHFVGIGGIG-----MSGLAEVLLNLGYKVSGS 38 (459)
T ss_pred CCCEEEEEEECHHH-----HHHHHHHHHHCCCEEEEE
T ss_conf 67889999866888-----999999999689939998
No 167
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.47 E-value=0.9 Score=24.90 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ +.|+.+.+||++|= +.+++++|.++|.+|.+..
T Consensus 1 M~~L~gK~alITGgs~GI---G~aia~~la~~G~~V~~~~ 37 (253)
T PRK12826 1 MRDLMGRVALVTGAARGI---GRAIAVRFAADGADVIVVD 37 (253)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 998899889994897789---9999999998799899998
No 168
>KOG1209 consensus
Probab=89.36 E-value=0.6 Score=26.14 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=30.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9988769998788525620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|++.|+|+|++|..||- +-|++.|+.++|+.|+- |.++.
T Consensus 4 ~~~~k~VlItgcs~GGI---G~ala~ef~~~G~~V~A-taR~~ 42 (289)
T KOG1209 4 QSQPKKVLITGCSSGGI---GYALAKEFARNGYLVYA-TARRL 42 (289)
T ss_pred CCCCCEEEEEECCCCCH---HHHHHHHHHHCCEEEEE-ECCCC
T ss_conf 56797599960577653---49999999867819999-70224
No 169
>LOAD_surE consensus
Probab=89.33 E-value=1.7 Score=22.93 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=25.2
Q ss_pred EEEEECCCCHHHHHHH-HHHHHHHHHCCCEEEEEECH
Q ss_conf 6999878852562079-99999999659839999572
Q gi|254781097|r 6 VILLVAGGTGGHVFPA-VALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 6 ~ili~~gGTGGHi~pa-lala~~L~~~g~~v~~~~~~ 41 (369)
+||++=-- |.-.|. .+|+++|++.||+|+++...
T Consensus 2 ~ILlTNDD--Gi~a~Gl~aL~~~l~~~g~~V~vvAP~ 36 (192)
T LOAD_surE 2 RILVTNDD--GIDSPGIRALAEALKEEGAEVTVVAPD 36 (192)
T ss_pred EEEEECCC--CCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 69998379--888888999999998789969998779
No 170
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.32 E-value=1.1 Score=24.34 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=31.6
Q ss_pred CEEEEEECCCCC--CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 148986304322--210233344544323202466067762025516776532210011113454444514443004489
Q gi|254781097|r 186 FHLLVFGGSQGA--KVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 186 ~~ILv~GGS~Ga--~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlv 263 (369)
..+|+.|++ |. ..+...+ ...+.+ ....|+-.+-....+.++..... .+. -.+++.+.+..|||+
T Consensus 184 ~nLlf~G~~-G~GKTfLa~~I---A~ell~---~g~sViy~ta~~L~~~l~~~~~~--~~~----~~~~~~~~l~~~DLL 250 (330)
T PRK06835 184 ENLLFYGNT-GTGKTFLSNCI---AKELLD---RGKTVIYRTSDELIENLREIRFN--NDN----DAPELEDLLINCDLL 250 (330)
T ss_pred CCEEEECCC-CCCHHHHHHHH---HHHHHH---CCCEEEEEEHHHHHHHHHHHHCC--CCC----CHHHHHHHHHHCCEE
T ss_conf 866988999-99889999999---999998---79949996299999999997545--764----489999999618989
Q ss_pred EE
Q ss_conf 97
Q gi|254781097|r 264 IC 265 (369)
Q Consensus 264 Is 265 (369)
|=
T Consensus 251 II 252 (330)
T PRK06835 251 II 252 (330)
T ss_pred EE
T ss_conf 97
No 171
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=89.27 E-value=1.7 Score=23.03 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=12.5
Q ss_pred CHHHHHHHHHCCCEEEE
Q ss_conf 20233345529604875
Q gi|254781097|r 269 ALTVSEIAVIGRPAILV 285 (369)
Q Consensus 269 ~~Ti~E~~~~g~P~IlI 285 (369)
...+.|+..+|+|.|.+
T Consensus 150 ~~ai~Ea~~l~IP~I~i 166 (205)
T pfam00318 150 HIAIKEASKLGIPVIAI 166 (205)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 38999998759975654
No 172
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.22 E-value=1.7 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCE
Q ss_conf 355542034442431265321024788862341101
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~v 120 (369)
..+.++.+|||+|+- ||-.+.+|.+
T Consensus 317 ~~~~~~~~kvd~VfH-----------AAA~KHVPl~ 341 (588)
T COG1086 317 VERAMEGHKVDIVFH-----------AAALKHVPLV 341 (588)
T ss_pred HHHHHHCCCCCEEEE-----------HHHHCCCCCH
T ss_conf 999986388866887-----------5555368631
No 173
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=89.11 E-value=0.71 Score=25.63 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=29.3
Q ss_pred EEEEECCCCHHHHH------------HHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 69998788525620------------79999999996598399995723
Q gi|254781097|r 6 VILLVAGGTGGHVF------------PAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 6 ~ili~~gGTGGHi~------------palala~~L~~~g~~v~~~~~~~ 42 (369)
||||++|||--++= -+.+||+++..+|++|+++.+..
T Consensus 2 kvLITaG~T~E~ID~VR~IsN~SSGk~G~aiA~~~~~~Ga~Vtli~g~~ 50 (228)
T PRK06732 2 KILITSGGTTEPIDAVRGITNHSTGQLGKIIAETFLQAGHEVTLVTTKT 50 (228)
T ss_pred EEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8999578876676884476767814999999999997899899995677
No 174
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.10 E-value=1.4 Score=23.46 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCCHHHHHHH-HHHHHHHHHCCCEEEEEECHHH---HHHHCCC-CCCCEEEEECCC-CCCCCHHHHHHHH
Q ss_conf 98876999878852562079-9999999965983999957237---6762444-687516875256-5653312332111
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPA-VALSHELKNRGYAVYLITDRRA---RSFITDF-PADSIYEIVSSQ-VRFSNPFVFWNSL 75 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~pa-lala~~L~~~g~~v~~~~~~~~---~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l 75 (369)
+++++||++=-- |=-.|+ .+|++.|++.| +|+++.+..- .+.-.-. ....+.++.... +.....-.-.
T Consensus 4 ~~~p~ILlTNDD--Gi~a~Gl~aL~~~l~~~~-~V~VvAP~~~~Sg~s~siTl~~plr~~~~~~~~~~~~y~v~GTP--- 77 (258)
T PRK13932 4 DKKPHILVCNDD--GIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTP--- 77 (258)
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCH---
T ss_conf 778759987478--889878999999998579-98999448998477556269997178997368965678816987---
Q ss_pred HHCCCCCHHHHHHHHHCCCCEEEE---CCC----CC--C--HHHHHHHHHCCCCCEEE
Q ss_conf 000121101355542034442431---265----32--1--02478886234110122
Q gi|254781097|r 76 VILWKAFIASLRLIKKLKPNVVVG---FGG----YH--S--ISPLLAGMILRIPSMVH 122 (369)
Q Consensus 76 ~~~~~~~~~~~~ii~~~kPDvVi~---tGG----y~--s--~P~~iaA~~l~iP~vih 122 (369)
.-.+.-++.-+-+.+||+||| .|. .+ | +.+.+-|.+++||.+-.
T Consensus 78 ---aDCV~lal~~l~~~kPDLVvSGIN~G~NlG~dv~YSGTVgAA~Eg~~~GipsIA~ 132 (258)
T PRK13932 78 ---VDCIKVALSHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAF 132 (258)
T ss_pred ---HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEECCHHHHHHHHHHHCCCCEEEE
T ss_conf ---9999999862158999989968768865671310407899999999759984999
No 175
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=89.02 E-value=0.17 Score=29.92 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 202333455296048753355248989998999998898899800019--9899999999986189999999999985
Q gi|254781097|r 269 ALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFL--SPERLAEELCSAMKKPSCLVQMAKQVSM 344 (369)
Q Consensus 269 ~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~--~~~~l~~~i~~ll~d~~~l~~m~~~~~~ 344 (369)
|.|+-|++.||+|+..--+ +| =|+.+++.--|.+|++.+. +++.|++-..+.-.||+.+++.|+.+-+
T Consensus 663 GLTv~EAM~cGLPTFAT~~----GG----P~EII~dgvsGFhIdP~~~~~~A~~l~~Ff~kC~~dP~~W~~iS~~gl~ 732 (790)
T TIGR02470 663 GLTVVEAMTCGLPTFATRF----GG----PLEIIQDGVSGFHIDPYHGEEAAEKLVDFFEKCDEDPSYWQKISQGGLQ 732 (790)
T ss_pred HHHHHHHHHCCCHHHHHHC----CC----CEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 2579998630112467626----89----6368772883542267558999999999998620383689999998867
No 176
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.90 E-value=1 Score=24.50 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+.|.++.+|+|+|= +.+++++|.++|..|....
T Consensus 1 M~l~~K~vlITGassGI---G~a~A~~la~~G~~vil~~ 36 (262)
T PRK09072 1 MDLKDKRVLLTGASGGI---GEALAEALCAAGARLLLVG 36 (262)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99899889994862399---9999999998799899998
No 177
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=88.72 E-value=0.54 Score=26.42 Aligned_cols=30 Identities=40% Similarity=0.707 Sum_probs=23.6
Q ss_pred EEECCC-CHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998788-525620799999999965983999957
Q gi|254781097|r 8 LLVAGG-TGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 8 li~~gG-TGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
++.||| || +-+.+|.++|.++||+|++++-
T Consensus 1 ~litGgnTG---fiG~~L~~~L~~~g~~V~~l~R 31 (307)
T TIGR01777 1 ILITGGNTG---FIGRALTQRLTKSGHEVTILTR 31 (307)
T ss_pred CEECCCCCC---HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 964153302---3789999999847998999961
No 178
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.61 E-value=1.9 Score=22.60 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=48.3
Q ss_pred EEEEECC-CC-HHHHHHHHHHHHHHHHCCCEEEEEECHH-H-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 6999878-85-2562079999999996598399995723-7-67624446875168752565653312332111000121
Q gi|254781097|r 6 VILLVAG-GT-GGHVFPAVALSHELKNRGYAVYLITDRR-A-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 6 ~ili~~g-GT-GGHi~palala~~L~~~g~~v~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
+||+++| |. |-| ...+|.+.|++|.++.+-. + ...+.... ..+|+-.. .-
T Consensus 2 ~iLVtGGAGYIGSH------tv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~-~~f~~gDi-------------------~D 55 (329)
T COG1087 2 KVLVTGGAGYIGSH------TVRQLLKTGHEVVVLDNLSNGHKIALLKLQ-FKFYEGDL-------------------LD 55 (329)
T ss_pred EEEEECCCCHHHHH------HHHHHHHCCCEEEEEECCCCCCHHHHHHCC-CCEEEECC-------------------CC
T ss_conf 29996586546899------999999789848999568878888860204-85688334-------------------31
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 1013555420344424312653210247888623411012215320
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVI 127 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v 127 (369)
.....+++.+++||.||-|.|+.+++ .....|.-.++.|..
T Consensus 56 ~~~L~~vf~~~~idaViHFAa~~~Vg-----ESv~~Pl~Yy~NNv~ 96 (329)
T COG1087 56 RALLTAVFEENKIDAVVHFAASISVG-----ESVQNPLKYYDNNVV 96 (329)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCC-----HHHHCHHHHHHHCHH
T ss_conf 99999999864998899873004323-----444187888860308
No 179
>PRK09134 short chain dehydrogenase; Provisional
Probab=88.55 E-value=1.4 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 998876999878852562079999999996598399995723
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
|..+|+++|++|+ +|= +.++++.|.+.|++|.+..++.
T Consensus 6 ~~~~KvalVTGas-~GI---G~aiA~~la~~Ga~V~i~~~~~ 43 (256)
T PRK09134 6 MAAPRAALVTGAA-RRI---GRAIALDLAAHGFDVAVHYNRS 43 (256)
T ss_pred CCCCCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999979994886-789---9999999998799899984999
No 180
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.40 E-value=1.5 Score=23.31 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=29.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78148986304322210233344544323202466067762025516776532210011113454444514443004489
Q gi|254781097|r 184 QPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 184 ~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlv 263 (369)
....+++.|++ |.+. +.........+. ...+.|+..+-.....+++..+.... .-..+...|+.+||.
T Consensus 104 ~~~nl~l~G~~-G~GK-thLa~Ai~~~l~---~~g~sv~f~~~~el~~~Lk~~~~~~~-------~~~~l~~~l~~~dlL 171 (254)
T COG1484 104 RGENLVLLGPP-GVGK-THLAIAIGNELL---KAGISVLFITAPDLLSKLKAAFDEGR-------LEEKLLRELKKVDLL 171 (254)
T ss_pred CCCCEEEECCC-CCCH-HHHHHHHHHHHH---HCCCEEEEEEHHHHHHHHHHHHHCCC-------HHHHHHHHHHHCCEE
T ss_conf 58828998999-9879-999999999999---83984999885999999999874552-------689999887528989
Q ss_pred E
Q ss_conf 9
Q gi|254781097|r 264 I 264 (369)
Q Consensus 264 I 264 (369)
|
T Consensus 172 I 172 (254)
T COG1484 172 I 172 (254)
T ss_pred E
T ss_conf 9
No 181
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=88.35 E-value=1.7 Score=22.95 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCC-CCEEEEECCCCHHHH-H-HHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
Q ss_conf 998-876999878852562-0-7999999999659839999572376762444
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHV-F-PAVALSHELKNRGYAVYLITDRRARSFITDF 50 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi-~-palala~~L~~~g~~v~~~~~~~~~~~~~~~ 50 (369)
|+- .|+|.+.- ||||- + .++.++++|.++|.+|+.+.+.....+..++
T Consensus 1 M~L~gK~I~lgv--TGSiaay~kv~~~ir~L~~~GA~V~~ImS~~a~~~~Trf 51 (195)
T PRK08305 1 MSLKGKRIGFGL--TGSHCTYEEVMPQIEKLVAEGAEVRPIVSYTVQTTDTRF 51 (195)
T ss_pred CCCCCCEEEEEE--CCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCC
T ss_conf 976898899996--727998999999999999879969999754477505667
No 182
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=88.26 E-value=1.3 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=10.2
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 0233345529604875
Q gi|254781097|r 270 LTVSEIAVIGRPAILV 285 (369)
Q Consensus 270 ~Ti~E~~~~g~P~IlI 285 (369)
.-+.|+..+|+|.|.+
T Consensus 141 ~ai~Ea~~l~IPvI~i 156 (193)
T cd01425 141 QAIREASKLGIPVIAI 156 (193)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 8999998618755788
No 183
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=88.25 E-value=2 Score=22.44 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=45.7
Q ss_pred CCEEEEECCCCH--HH----HHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 876999878852--56----207999999999659839999572376762444687516875256565331233211100
Q gi|254781097|r 4 NNVILLVAGGTG--GH----VFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 4 ~~~ili~~gGTG--GH----i~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
-+||||.|+|-= |+ =+-+.--..+|++.|++|.++-+....-...+......|..+.
T Consensus 7 ikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePl----------------- 69 (1068)
T PRK12815 7 IKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPL----------------- 69 (1068)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCC-----------------
T ss_conf 888999898815312344656569999999998699899988983262089874443788589-----------------
Q ss_pred CCCCCHHHHHHHHHCCCCEEEE-CCCCCCHH
Q ss_conf 0121101355542034442431-26532102
Q gi|254781097|r 78 LWKAFIASLRLIKKLKPNVVVG-FGGYHSIS 107 (369)
Q Consensus 78 ~~~~~~~~~~ii~~~kPDvVi~-tGGy~s~P 107 (369)
..-...++|+++|||.|+. +||=.++-
T Consensus 70 ---t~e~v~~Ii~~E~Pd~il~~~GGqtaLn 97 (1068)
T PRK12815 70 ---TLEFVKRIIRREKPDALLATLGGQTALN 97 (1068)
T ss_pred ---CHHHHHHHHHHHCCCEEEECCCCHHHHH
T ss_conf ---8999999999749998986777847999
No 184
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=88.10 E-value=1.2 Score=23.97 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=17.6
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH
Q ss_conf 566732530444324565433344331144781489863043222102
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS 201 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln 201 (369)
..+++.+.| |.-.-|... +..++ +|+++|..|...+-
T Consensus 87 ~gd~i~v~G-P~G~~~~~~--------~~~~~--vlliagGtG~aPl~ 123 (252)
T COG0543 87 EGDKIRVRG-PLGNGFLRE--------KIGKP--VLLIAGGTGIAPLY 123 (252)
T ss_pred CCCEEEEEC-CCCCCCCCC--------CCCCE--EEEEECCCCHHHHH
T ss_conf 798899975-677871334--------56872--99997634688899
No 185
>PRK09135 pteridine reductase; Provisional
Probab=88.09 E-value=1.4 Score=23.47 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 99887699987885256207999999999659839999572
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
|+..-|+.+.+||++|= +.++++.|.+.|.+|.+....
T Consensus 2 M~~sgKvalVTGas~GI---G~aia~~la~~Ga~Vvi~~~~ 39 (249)
T PRK09135 2 MTDSSKVALITGGARRI---GAAIARTLHAAGYRVAVHYHR 39 (249)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEECC
T ss_conf 78999889996887589---999999999879989998189
No 186
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=88.05 E-value=1.8 Score=22.78 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=20.4
Q ss_pred CCCHHHHHC--CCEEEECCCCHHHHHHHHHCCCEEEEECCC
Q ss_conf 451444300--448997254202333455296048753355
Q gi|254781097|r 251 KDIERYIVE--ANLLICRSGALTVSEIAVIGRPAILVPYPH 289 (369)
Q Consensus 251 ~~m~~~~~~--aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~ 289 (369)
.++.+.+.. .|++|+.+-...+ +.-.|+|.+-+=+|.
T Consensus 331 ~e~~~~i~~~~pDliig~s~~~~~--a~~~~ip~i~~~~P~ 369 (398)
T pfam00148 331 EELEELIKELKPDLLIGNSKERYL--AKKLGIPLVRIGFPI 369 (398)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHH--HHHCCCCEEEEECCE
T ss_conf 999999872699999989178999--997399889822780
No 187
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=87.90 E-value=2.1 Score=22.30 Aligned_cols=97 Identities=24% Similarity=0.306 Sum_probs=54.7
Q ss_pred HHHHC--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC-CCCCCC--CCC
Q ss_conf 43311--4478148986304322210233344544323202466067762025516776532210011-113454--444
Q gi|254781097|r 177 YQSSD--LDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGC-KATLAC--FFK 251 (369)
Q Consensus 177 ~~~~~--~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~-~~~v~~--f~~ 251 (369)
....+ +.+++ +|+. ||+..-+.+ ++.|...+-..+.|+ | +.+++.++..++.+. ...-+. -++
T Consensus 176 ~ifG~erL~~~~-~Lli----GAGeMg~Lv---a~~L~~~~v~~~~i~---N-Rt~~rA~~LA~e~~~P~~~~f~~La~~ 243 (436)
T TIGR01035 176 KIFGSERLKGKK-VLLI----GAGEMGELV---AKHLREKGVGKVLIA---N-RTYERAEKLAKELGGPEAVKFEALALE 243 (436)
T ss_pred HHHCCCCCCCCE-EEEE----ECCHHHHHH---HHHHHHCCCCEEEEE---C-CCHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 872562116641-8998----274579999---999964895289885---5-677899999987078664544455489
Q ss_pred CCHHHHHCCCEEEECCCCHH-------HHHHHHHC------CCEEEE
Q ss_conf 51444300448997254202-------33345529------604875
Q gi|254781097|r 252 DIERYIVEANLLICRSGALT-------VSEIAVIG------RPAILV 285 (369)
Q Consensus 252 ~m~~~~~~aDlvIsraG~~T-------i~E~~~~g------~P~IlI 285 (369)
+|.++++.+|+|||--||.- +-++.... .|+++|
T Consensus 244 ~L~~~L~~~DivissTgA~~pi~~~~~~e~a~~~Rr~de~~~pl~~~ 290 (436)
T TIGR01035 244 KLEEALAEADIVISSTGAPEPIVSKEDVERALKERRRDEAARPLFIV 290 (436)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99999742889998557653100203489999972220015886999
No 188
>PRK07707 consensus
Probab=87.88 E-value=1.2 Score=23.90 Aligned_cols=32 Identities=41% Similarity=0.677 Sum_probs=24.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+.+.+|||+|= +.++++.|.++|.+|.+...
T Consensus 3 KvalVTG~s~GI---G~aia~~la~~Ga~V~i~~~ 34 (239)
T PRK07707 3 KYALVTGASGGI---GQAISKQLAQDGYTVYLHYN 34 (239)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 899996688789---99999999987998999839
No 189
>PRK12746 short chain dehydrogenase; Provisional
Probab=87.66 E-value=1.5 Score=23.39 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=27.5
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 998-876999878852562079999999996598399995723
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
|.+ +-|+.+.+||++|= +.+++++|.++|.+|.+..++.
T Consensus 1 M~~l~gKvalITGga~GI---G~aia~~la~~Ga~V~i~~~~~ 40 (254)
T PRK12746 1 MKNLDGKVALVTGASRGI---GRAIAMRLANDGALVAIHYGRN 40 (254)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECCCC
T ss_conf 969999889994847689---9999999998799999965999
No 190
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=87.64 E-value=1.2 Score=23.91 Aligned_cols=36 Identities=8% Similarity=0.227 Sum_probs=16.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 48986304322210233344544323202466067762025
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
++|+.||..|...+. ..++.+.+.. ..+.++.+.+.
T Consensus 99 ~~llVaGG~GiaPl~----~l~~~l~~~g-~~v~~i~g~r~ 134 (243)
T cd06192 99 TVLLVAGGIGLAPLL----PIAKKLAANG-NKVTVLAGAKK 134 (243)
T ss_pred EEEEEECCCCHHHHH----HHHHHHHHCC-CCEEEEEEECC
T ss_conf 699995673416599----9999998779-96699999388
No 191
>KOG1252 consensus
Probab=87.58 E-value=0.67 Score=25.78 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=12.3
Q ss_pred ECCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 12653210247888623411012
Q gi|254781097|r 99 GFGGYHSISPLLAGMILRIPSMV 121 (369)
Q Consensus 99 ~tGGy~s~P~~iaA~~l~iP~vi 121 (369)
.|-|-......++|.+++.++++
T Consensus 110 pTSGNtGigLA~~~a~~Gyk~i~ 132 (362)
T KOG1252 110 PTSGNTGIGLAYMAALRGYKCII 132 (362)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 69985389999999973963999
No 192
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=87.44 E-value=2.1 Score=22.33 Aligned_cols=99 Identities=17% Similarity=0.325 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEE--ECCCCHH------------HHHHHHHCCCEEEEE-CCCCCCC
Q ss_conf 167765322100111134544445144430044899--7254202------------333455296048753-3552489
Q gi|254781097|r 229 DKEKVQKQYDELGCKATLACFFKDIERYIVEANLLI--CRSGALT------------VSEIAVIGRPAILVP-YPHSVDQ 293 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvI--sraG~~T------------i~E~~~~g~P~IlIP-~p~a~~~ 293 (369)
+.+++.+.+.. .=-.|++|.....+--...|... +.-|+.. +.-....-+|-|.|| ||.. |
T Consensus 953 ~L~~l~~A~~~--~Le~vFpyr~k~e~k~e~~~~~~~~~~dGanildnGqmhiekk~~~~~~~v~KP~VvIpvFPGt--N 1028 (1279)
T TIGR01857 953 DLEELEEAWEE--KLEEVFPYRSKLEDKKETVEVLAVASEDGANILDNGQMHIEKKVVKAKEKVEKPRVVIPVFPGT--N 1028 (1279)
T ss_pred CHHHHHHHHHC--CCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHCCCEEEEEEEEEECCEEECCEEEEECCCCC--C
T ss_conf 67999999863--7830156455440146778677541744441010673566558876130540786798135889--8
Q ss_pred HHHHHHHHHHHCCCEE-EEEHHCCCHHHHHHHHHHHHCC
Q ss_conf 8999899999889889-9800019989999999998618
Q gi|254781097|r 294 DQLHNAYYLQEGGGAK-VITENFLSPERLAEELCSAMKK 331 (369)
Q Consensus 294 hQ~~NA~~l~~~G~a~-~i~~~~~~~~~l~~~i~~ll~d 331 (369)
=+|.-++.|++.||=. .+.=.+||.+.|.+.|..+.+|
T Consensus 1029 sEYD~~~aFe~~GAev~~~~~~nL~~~a~~~Sv~~l~~~ 1067 (1279)
T TIGR01857 1029 SEYDSAKAFEKEGAEVKLVILRNLTEEALVESVEELVDE 1067 (1279)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 488888898545895899600038888999999999874
No 193
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=87.42 E-value=2.3 Score=22.11 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=45.9
Q ss_pred CCCEEEEECC-CCH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCC-----C-CCCHHHHHHH
Q ss_conf 8876999878-852-562079999999996598399995723767624446875168752565-----6-5331233211
Q gi|254781097|r 3 ENNVILLVAG-GTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQV-----R-FSNPFVFWNS 74 (369)
Q Consensus 3 ~~~~ili~~g-GTG-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~ 74 (369)
++|+|-+.++ |.. |=.-.-.|+.+.-...|++|+.+-. +.+..+..- ..+.......+ + +..+......
T Consensus 2 ~~K~IaVLTSGGDapGMNAAIRAvVr~ai~~G~ev~gI~~-Gy~GLv~Gg--d~i~~l~~~dV~gil~~GGTiLGTaR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIYVGAKVFFVYE-GYEGLVKGG--DYIKQAEWESVSNWLQEGGTIIGSARCK 78 (762)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECH-HCCHHHCCC--CCEEECCHHHHCCHHHCCCEEECCCCCC
T ss_conf 9988999798768346779999999999986989999861-001745498--6667898567469775698465777897
Q ss_pred HHHCCCCCHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 10001211013555420344424312653210
Q gi|254781097|r 75 LVILWKAFIASLRLIKKLKPNVVVGFGGYHSI 106 (369)
Q Consensus 75 l~~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~ 106 (369)
-|+-..+..++..-+.+...|..|--||-=|+
T Consensus 79 ~F~~~egr~~a~~nL~~~gIdaLiVIGGDGSl 110 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSL 110 (762)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 54577689999999998099889998795378
No 194
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=87.42 E-value=2.2 Score=22.23 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=52.3
Q ss_pred CEEEEEC-CCCH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCC-----CCCHHHHHHHH-H
Q ss_conf 7699987-8852-5620799999999965983999957237676244468751687525656-----53312332111-0
Q gi|254781097|r 5 NVILLVA-GGTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVR-----FSNPFVFWNSL-V 76 (369)
Q Consensus 5 ~~ili~~-gGTG-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l-~ 76 (369)
|||-|.+ ||.. |=.....++.+....+|++|+-+- .+...++.. .+.++....+. +-..+..-+.. +
T Consensus 1 KrIaIltsGGd~pGmNa~Ir~vv~~a~~~g~~v~Gi~-~G~~GL~~~----~~~~l~~~~v~~i~~~GGt~LgtsR~~~~ 75 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIR-DGYAGLIAG----DIVPLDRYSVSDIINRGGTFLGSARFPEF 75 (317)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHCCC----CEEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9599995788856889999999999987899999982-567787079----81628999998798659950146778754
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCE
Q ss_conf 00121101355542034442431265321024788862341101
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~v 120 (369)
.--....+....+++++.|.++.-||.-|+-....-.-.++|++
T Consensus 76 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~l~e~~i~vi 119 (317)
T cd00763 76 KDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCV 119 (317)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEE
T ss_conf 55678999999999829998999569458999999997499779
No 195
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.41 E-value=1.4 Score=23.51 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ +-|+.+.+||+.|- +.++++.|.++|..|.+..
T Consensus 2 m~~l~gKvalVTGgs~GI---G~a~A~~la~~Ga~V~i~~ 38 (262)
T PRK13394 2 MSNLNGKTAVVTGAASGI---GKEIALELARAGAAVAIAD 38 (262)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 978899989995857789---9999999998799999997
No 196
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.27 E-value=2.3 Score=22.05 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 887699987885256207999999999659839999
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
++++|-+.++|-+ +++.|..|.++||+|++.
T Consensus 305 ~~~kVAVIGsGPA-----GLs~A~~Lar~Gy~VTVF 335 (944)
T PRK12779 305 VKPPIAVVGSGPS-----GLINAYLLAVEGFPVTIF 335 (944)
T ss_pred CCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 7986799885768-----999999999779933999
No 197
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.26 E-value=2.3 Score=22.05 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=24.7
Q ss_pred CCC-CCEEEEECC-CCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998-876999878-8525620799999999965983999957
Q gi|254781097|r 1 MSE-NNVILLVAG-GTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~-~~~ili~~g-GTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+- +|+|+|.|- +| +++.++.|.++|++|.....
T Consensus 1 m~~~~k~v~viGlG~s------G~s~a~~L~~~G~~v~~~D~ 36 (445)
T PRK04308 1 MTFQNKKILVAGLGGT------GISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CCCCCCEEEEEEECHH------HHHHHHHHHHCCCEEEEEEC
T ss_conf 9979998999998999------99999999978991999979
No 198
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.23 E-value=1.4 Score=23.46 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.+++++|.++|.+|.+..
T Consensus 2 m~l~gK~alITGgs~GI---G~aia~~la~~G~~V~i~~ 37 (250)
T PRK07231 2 MRLEGKVAIVTGAGSGF---GEGIARRFAAEGARVVVTD 37 (250)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 07699889993888689---9999999998799999997
No 199
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.18 E-value=1.9 Score=22.62 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 87699987885256207999999999659839999572
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
+-|+.+.+||++|= +.+++++|.++|..|.+....
T Consensus 6 kgK~~lITGas~GI---G~aia~~la~~G~~V~~~~~~ 40 (250)
T PRK12825 6 SGRVALVTGAARGI---GRAIALRLAAAGADVIVHPPS 40 (250)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEECC
T ss_conf 97889993895589---999999999879989999798
No 200
>TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245 This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane.
Probab=87.13 E-value=0.4 Score=27.34 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=68.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC-CCCHHHH-HCCCEEE
Q ss_conf 898630432221023334454432320246-606776202551677653221001111345444-4514443-0044899
Q gi|254781097|r 188 LLVFGGSQGAKVFSDIVPKSIALIPEMQRK-RLVIMQQVREDDKEKVQKQYDELGCKATLACFF-KDIERYI-VEANLLI 264 (369)
Q Consensus 188 ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~-~~m~~~~-~~aDlvI 264 (369)
|. +.|=.|+..+ ..+.|-|.+.. .+.=....+....+.=+..+...+..++...+. |||..+. -.=||+|
T Consensus 292 ~~-v~GYEG~EL~------~~RLL~E~G~dv~Y~~ta~~rT~~~~~D~~~L~~~G~~VkyR~~LE~D~~Av~~f~PDL~I 364 (426)
T TIGR02015 292 VT-VSGYEGSELL------VVRLLLESGADVPYVGTAIPRTAWGAEDKEWLEALGVEVKYRASLEDDMEAVEEFEPDLAI 364 (426)
T ss_pred EE-EEECCCCHHH------HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEE
T ss_conf 89-8511562688------8898887077533100135677542667999984795588602236789999616997576
Q ss_pred ECCCCHH-HHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7254202-3334552960487533552489899989999-98898899800019989999999998618999999999
Q gi|254781097|r 265 CRSGALT-VSEIAVIGRPAILVPYPHSVDQDQLHNAYYL-QEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAK 340 (369)
Q Consensus 265 sraG~~T-i~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l-~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~ 340 (369)
. .++ ...+-..|+|+|+-- | .--|+-+ -..| +..+...|..+++|.++..+|++
T Consensus 365 G---TT~l~~~AK~~GiPalYfT------N--~ISARPl~~~aG-----------A~Sl~~~i~~~~~~r~~~g~M~~ 420 (426)
T TIGR02015 365 G---TTPLVQFAKEKGIPALYFT------N--LISARPLMGPAG-----------AGSLLQVINGALENRERYGRMKE 420 (426)
T ss_pred E---CCCHHHHHHHCCCCEEEHH------H--CHHHCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1---6735678775489612111------0--112032210001-----------78999999998740567665674
No 201
>PRK09291 short chain dehydrogenase; Provisional
Probab=86.96 E-value=1.8 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+ |+++|+|+++| = +.++|.+|.++|++|....
T Consensus 1 Mg--K~vLITGAssG-I---GraiA~~la~~G~~Vi~~~ 33 (257)
T PRK09291 1 MS--KTILITGAGSG-F---GREVALRLARKGHRVIAGV 33 (257)
T ss_pred CC--CEEEEECCCCH-H---HHHHHHHHHHCCCEEEEEE
T ss_conf 99--98999689858-9---9999999998799899996
No 202
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.95 E-value=1.7 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+.+|.++|++++ +|= +.++++.|.+.|+.|.+..
T Consensus 3 ~~~mKvalITGas-~GI---G~a~A~~la~~G~~V~l~~ 37 (241)
T PRK07454 3 LNSMPTALITGAS-RGI---GKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCCCEEEECCCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 8999889991758-789---9999999998799899998
No 203
>PRK06123 short chain dehydrogenase; Provisional
Probab=86.88 E-value=1.7 Score=23.00 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988769998788525620799999999965983999957
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|.+ |+.+.+||++|= +.++++.|.+.|.+|.+...
T Consensus 1 m~n--KvalITGas~GI---G~aia~~la~~Ga~V~i~~~ 35 (249)
T PRK06123 1 MMR--KVMIITGASRGI---GAATALLAAERGYAVCLNYL 35 (249)
T ss_pred CCC--CEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 999--889996868799---99999999987998999808
No 204
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I; InterPro: IPR011908 This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria .; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=86.71 E-value=2.5 Score=21.84 Aligned_cols=306 Identities=16% Similarity=0.197 Sum_probs=131.4
Q ss_pred EEEEE-CC--CCHHHHHHHHHHHHHHHHCC-----CEEEEEECHHHHHHHCCCCCCCEEEEECCCCCC--CCHHHHHHHH
Q ss_conf 69998-78--85256207999999999659-----839999572376762444687516875256565--3312332111
Q gi|254781097|r 6 VILLV-AG--GTGGHVFPAVALSHELKNRG-----YAVYLITDRRARSFITDFPADSIYEIVSSQVRF--SNPFVFWNSL 75 (369)
Q Consensus 6 ~ili~-~g--GTGGHi~palala~~L~~~g-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 75 (369)
||+|+ ++ |.==|..|+++.++.. --+ -++.++++++-.....-.+.. ..+.....|+ ++++..
T Consensus 1 ~ILIVktSSlGDviH~~Pa~~d~~r~-~P~iyPqr~~idWvVEE~FA~i~~~hp~V--~~vi~~alRRWRK~lfs~---- 73 (359)
T TIGR02193 1 KILIVKTSSLGDVIHTLPALTDIKRA-LPDIYPQRVEIDWVVEEGFADIVRLHPAV--DEVIPVALRRWRKTLFSA---- 73 (359)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEEECCHHHHHHHCHHH--HCCCCCCHHHHCCCCCCH----
T ss_conf 95789861012254554489999985-78987434789887614211034415346--000034111201274887----
Q ss_pred HHCCCCCHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHCCCCCEEEC-CCCCCH---HHHHH-------------HHH
Q ss_conf 00012110135554203444243126532-1024788862341101221-532001---56778-------------899
Q gi|254781097|r 76 VILWKAFIASLRLIKKLKPNVVVGFGGYH-SISPLLAGMILRIPSMVHE-QNVIMG---KANRL-------------LSW 137 (369)
Q Consensus 76 ~~~~~~~~~~~~ii~~~kPDvVi~tGGy~-s~P~~iaA~~l~iP~vihE-qN~v~G---~~nk~-------------l~~ 137 (369)
..|+-+..-+..|+..+-|+||=+=|-+ | +++|.+...-|..=.. +-+.-| ++--| +.|
T Consensus 74 -~~~~e~~~l~~~Lr~~~YD~ViD~QGL~KS--A~~a~~a~~g~~~G~d~~SarEpYE~lA~lFY~~~~~v~~~~hav~R 150 (359)
T TIGR02193 74 -ATWREIKALRALLRAERYDAVIDAQGLIKS--ALVARMARAGPRHGFDRRSAREPYERLASLFYNKRVSVSYQQHAVER 150 (359)
T ss_pred -HHHHHHHHHHHHCCCCCCCEEECCHHHHHH--HHHHHHHHCCCEEECCCCCCCCCCCHHHHHHCCCCEECCCCCCHHHH
T ss_conf -489999999985200248824511246899--99999970656251588876556641222201350207867738898
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEECCCCH-----HHHHHHHH--HH--HHHCCCCCCEEEEEECCCCCCCHH-HHHHHH
Q ss_conf 999874134322223556673253044432-----45654333--44--331144781489863043222102-333445
Q gi|254781097|r 138 GVQIIARGLVSSQKKVLLRKIIVTGNPIRS-----SLIKMKDI--PY--QSSDLDQPFHLLVFGGSQGAKVFS-DIVPKS 207 (369)
Q Consensus 138 ~a~~v~~~~~~~~~~~~~~k~~~~G~PvR~-----~~~~~~~~--~~--~~~~~~~~~~ILv~GGS~Ga~~ln-~~v~~~ 207 (369)
--..++.++....+.. .+..-.|+--+. .+...... .. -..+.|.|..+|+-+-|--++.-- +.-.+.
T Consensus 151 ~R~L~a~aLGY~~~~i--~~~~d~Gl~~~~~a~~~~~~~~~~~~~~~r~l~~~k~~py~vllHaTSR~dK~WP~~~W~~l 228 (359)
T TIGR02193 151 NRKLFALALGYAPPEI--AETIDFGLARRARAFSVAFLGLALPLELVRALELDKDAPYAVLLHATSRDDKKWPEERWREL 228 (359)
T ss_pred HHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 8999999818888875--55320022265433331112200133201000110788968982144500235867899999
Q ss_pred HHHHHHHCCCC-CEEEEEECCCCHHHHHHHHHHCCC---CCCCCCC--CCCCHHHHHCCCEEEECCCCHHH-HHHHHHCC
Q ss_conf 44323202466-067762025516776532210011---1134544--44514443004489972542023-33455296
Q gi|254781097|r 208 IALIPEMQRKR-LVIMQQVREDDKEKVQKQYDELGC---KATLACF--FKDIERYIVEANLLICRSGALTV-SEIAVIGR 280 (369)
Q Consensus 208 ~~~l~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~---~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti-~E~~~~g~ 280 (369)
+..|.+ ... +.|+.--|.....+-.+.....-. ++.|.+= -+++..++..|++||+ +=+-+ .=+.|+++
T Consensus 229 ~~~L~e--~~gy~~~~LpWgn~~E~~~A~~la~~~~~~~~v~VlPk~~L~~va~~l~~a~avVG--vDTGL~HLA~Al~k 304 (359)
T TIGR02193 229 ARLLLE--ERGYLQIVLPWGNDAEKARAERLAEALPGAEDVVVLPKMSLAEVAALLAGADAVVG--VDTGLTHLAAALDK 304 (359)
T ss_pred HHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEE--CCHHHHHHHHHHCC
T ss_conf 999705--69927987269986899999999860430314677589998999998817707997--25248999998479
Q ss_pred CEEEEECCCCCCCHH-----HHHHHHHHHCCCEEE---EEHHCCCHHHHHHHHHHHH
Q ss_conf 048753355248989-----998999998898899---8000199899999999986
Q gi|254781097|r 281 PAILVPYPHSVDQDQ-----LHNAYYLQEGGGAKV---ITENFLSPERLAEELCSAM 329 (369)
Q Consensus 281 P~IlIP~p~a~~~hQ-----~~NA~~l~~~G~a~~---i~~~~~~~~~l~~~i~~ll 329 (369)
|+|-| |- .+|-.+ ..|...+.+...-+. ..-..++++.+.+++.+++
T Consensus 305 P~v~l-Y~-~T~p~~tg~~g~~~~~~~G~~~~~Y~K~DfS~~~p~~~~v~~~l~~~l 359 (359)
T TIGR02193 305 PTVTL-YG-ATDPGRTGGYGKPNVALLGESNADYDKKDFSGAKPTPDEVLAALEELL 359 (359)
T ss_pred CEEEE-EC-CCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 76987-35-878356177565310123566777555566889988899999999609
No 205
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.61 E-value=1.7 Score=22.94 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ .|+++|++|+ +|= +.++++.|.++|.+|.+..
T Consensus 1 M~rl~gK~~lITGas-~GI---G~aiA~~la~~Ga~V~i~~ 37 (249)
T PRK06500 1 MSRLQGKTALITGGT-SGI---GLETARQFAAEGARVAITG 37 (249)
T ss_pred CCCCCCCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989899889993768-789---9999999998799999996
No 206
>PRK07904 short chain dehydrogenase; Provisional
Probab=86.60 E-value=1.2 Score=24.01 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 8876999878852562079999999996598399995723
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
++|+|+|+||.+ |= +.++++++.++|+...++.+++
T Consensus 7 n~KtvlITGass-GI---G~a~a~~~~~~g~~~v~l~~r~ 42 (253)
T PRK07904 7 NPQTILLLGGTS-EI---GLAICERYLRNAPARVVLAALP 42 (253)
T ss_pred CCCEEEEECCCC-HH---HHHHHHHHHHCCCCEEEEEECC
T ss_conf 999899935650-99---9999999997498989999789
No 207
>PRK03202 6-phosphofructokinase; Provisional
Probab=86.60 E-value=1.2 Score=24.13 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=52.6
Q ss_pred CEEEEEC-CCC-HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCC------CCCCHHHHHHHHH
Q ss_conf 7699987-885-2562079999999996598399995723767624446875168752565------6533123321110
Q gi|254781097|r 5 NVILLVA-GGT-GGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQV------RFSNPFVFWNSLV 76 (369)
Q Consensus 5 ~~ili~~-gGT-GGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~ 76 (369)
|+|.|.+ ||. .|=.....++.+.....|++|+-+- .+.+.++... +..+....+ .+.-+......++
T Consensus 3 kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~-~G~~GL~~~~----~~~L~~~~v~~i~~~GGt~LgtsR~~~~ 77 (323)
T PRK03202 3 KKIGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIY-NGYLGLLEGD----IIDLDRASVSDLINRGGTALGSARYPEF 77 (323)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCHHHHCCCC----EEECCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 6699993688867789999999999997899999991-6778864898----5769999999998479867420488877
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCE
Q ss_conf 001211013555420344424312653210247-88862341101
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSM 120 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~v 120 (369)
.......++...+++++.|.+|.-||.=|+-.. ..+.-.++|++
T Consensus 78 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vi 122 (323)
T PRK03202 78 KLEEGRAKAIENLKKHGIDALVVIGGDGSYDGAKKLSEEYGIPCI 122 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 788899999999998299999993794699999999843797489
No 208
>PRK05868 hypothetical protein; Validated
Probab=86.51 E-value=1.2 Score=24.00 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=25.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 7699987885256207999999999659839999
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
+||+|+++|-+ ++++|-.|.+.|++|.++
T Consensus 2 ~kVlIvGaGiA-----GlalA~~L~r~G~~VtV~ 30 (372)
T PRK05868 2 KTVLVSGASVA-----GTAAAYWLGRHGYSVTMV 30 (372)
T ss_pred CEEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 99999898889-----999999998589988999
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.47 E-value=2.3 Score=22.02 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=31.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 898630432221023334454432320246606776202551677653221001111345444451444300448997
Q gi|254781097|r 188 LLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLIC 265 (369)
Q Consensus 188 ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIs 265 (369)
=|++-|.-|.+. +.....+...+.+ ....|+..+-....+.++..|.+.. .. .+++-..++.+||+|=
T Consensus 98 gLlF~G~~GTGK-ThLA~aIan~Li~---~G~sVlf~t~~dLl~~lr~t~~~~~--~~----e~~~l~~l~~~dLLIi 165 (242)
T PRK07952 98 SFIFSGKPGTGK-NHLAAAICNELLL---RGKSVLIITVADIMSAMKDTFRNSE--TS----EEQLLNDLSNVDLLVI 165 (242)
T ss_pred EEEEECCCCCCH-HHHHHHHHHHHHH---CCCEEEEEEHHHHHHHHHHHHHCCC--CC----HHHHHHHHHCCCEEEE
T ss_conf 179978999978-9999999999998---7994999779999999999980687--56----9999998631898987
No 210
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=86.45 E-value=1.7 Score=22.98 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.0
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ +-|+++.+||++|= +.++++.|.++|.+|.+..
T Consensus 1 M~~L~gK~alVTGas~GI---G~aia~~l~~~Ga~V~~~~ 37 (263)
T PRK06200 1 MGWLTGQVALITGGGSGI---GRALVERFLAEGARVAVLE 37 (263)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 987172889995866799---9999999998799999997
No 211
>pfam08323 Glyco_transf_5 Starch synthase catalytic domain.
Probab=86.29 E-value=2.6 Score=21.70 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 525620799999999965983999957237
Q gi|254781097|r 14 TGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 14 TGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|||=--.+-+|.++|.++|++|.++....+
T Consensus 14 vGGLgdvv~~Lp~aL~~~G~~V~vi~P~Y~ 43 (229)
T pfam08323 14 TGGLADVVGALPKALAKLGHDVRVILPRYG 43 (229)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 665899999999999976994999932898
No 212
>PRK12743 acetoin dehydrogenase; Provisional
Probab=86.28 E-value=1.7 Score=22.90 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 99887699987885256207999999999659839999572
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
|+ |+.+.+||++|= +.++++.|.+.|.+|.+...+
T Consensus 1 M~---KValITGgs~GI---G~a~a~~la~~Ga~V~i~~~~ 35 (253)
T PRK12743 1 MA---QVAIVTASDSGI---GKACALLLAQQGFDIGITWHS 35 (253)
T ss_pred CC---CEEEEECCCCHH---HHHHHHHHHHCCCEEEEECCC
T ss_conf 99---989990758899---999999999879989997489
No 213
>PRK08264 short chain dehydrogenase; Validated
Probab=86.05 E-value=1.8 Score=22.79 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9988769998788525620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+-+.|+.+.+||++|= +.+++++|.++|..+.+.+.+..
T Consensus 1 m~l~gK~alITGassGI---G~aiA~~la~~Ga~~V~~~~r~~ 40 (235)
T PRK08264 1 MDIKGKVVLVTGANRGI---GRAFVEELLARGAAKVYAAARDP 40 (235)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCCEEEEECCCH
T ss_conf 92799889992675499---99999999986997799972784
No 214
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=85.93 E-value=2 Score=22.47 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+++.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~L~gKvalITGgs~GI---G~aia~~~a~~Ga~V~i~~ 36 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGL---GRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99899889990678789---9999999998799999998
No 215
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.86 E-value=2.7 Score=21.55 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=60.5
Q ss_pred CCCHHHHHCCCEEEE---CCCCHHHH-HHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHH
Q ss_conf 451444300448997---25420233-3455296--04875335524898999899999889889980001998999999
Q gi|254781097|r 251 KDIERYIVEANLLIC---RSGALTVS-EIAVIGR--PAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEE 324 (369)
Q Consensus 251 ~~m~~~~~~aDlvIs---raG~~Ti~-E~~~~g~--P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~ 324 (369)
+++..+|+.||+++- |-|-+.++ |-.++.. |-+||=-.++ -.-+....|+++... +.+.++++
T Consensus 352 ~el~aly~~ADv~lVT~lrDGMNLvakEyva~q~~~~GvLILSefa---------Gaa~~L~~Al~VNP~--d~~~~a~a 420 (460)
T cd03788 352 EELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA---------GAAEELSGALLVNPY--DIDEVADA 420 (460)
T ss_pred HHHHHHHHHHHEEEECCCCCCCCCCCHHHEEEECCCCCEEEEECCC---------CCHHHHCCCEEECCC--CHHHHHHH
T ss_conf 9999999861057855342332534131136755999559996552---------436672878797999--98999999
Q ss_pred HHHHHCC--HHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9998618--999999999998527832799999999
Q gi|254781097|r 325 LCSAMKK--PSCLVQMAKQVSMKGKPQAVLMLSDLV 358 (369)
Q Consensus 325 i~~ll~d--~~~l~~m~~~~~~~~~~~aa~~i~~~i 358 (369)
|...+.- .++.++|+...+.+...+...=..+.+
T Consensus 421 i~~AL~M~~~Er~~R~~~l~~~v~~~~~~~W~~~fl 456 (460)
T cd03788 421 IHRALTMPLEERRERHRKLREYVRTHDVQAWANSFL 456 (460)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999975999999999999999988579999999999
No 216
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.85 E-value=1.9 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-+-|+.+.+||++|- +.++++.|.+.|.+|.+..
T Consensus 5 ~L~gK~alITG~s~GI---G~aiA~~la~~Ga~V~i~~ 39 (263)
T PRK08339 5 DLSGKLAFTTASSKGI---GFGVARVLARAGADVIILS 39 (263)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 7899989991626099---9999999998699999997
No 217
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.85 E-value=2 Score=22.44 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+.|+.+.+||++|= +.+++++|.+.|.+|.+..
T Consensus 2 ~~L~gK~alVTGas~GI---G~aia~~la~~Ga~V~i~~ 37 (254)
T PRK08642 2 MDISEQIVLVTGGSRGL---GAAIARAFAREGARVVVNY 37 (254)
T ss_pred CCCCCCEEEEECHHHHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 89898999997811199---9999999998799999961
No 218
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=85.82 E-value=2.7 Score=21.54 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHH-----------HCCCEEEEEECHHH---HHHHCCCCCCCEEEEECC
Q ss_conf 85256207999999999-----------65983999957237---676244468751687525
Q gi|254781097|r 13 GTGGHVFPAVALSHELK-----------NRGYAVYLITDRRA---RSFITDFPADSIYEIVSS 61 (369)
Q Consensus 13 GTGGHi~palala~~L~-----------~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~ 61 (369)
|.||-..-+.++.++|. +.+++++|+.+-.. ...+..........+..+
T Consensus 79 GIGGS~LG~~a~~~aL~~~~~n~~~~~~~~~~~i~f~~NvDp~~l~~~l~~ld~~~TlfiViS 141 (454)
T PRK00973 79 GIGGSALGNLALHTALLPLNYNELSKEERNGYRIFVLDNVDPEKTASILDVIDPKKTLFNVIS 141 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 435367899999999500112310011168975999808998999999974793307999984
No 219
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=85.82 E-value=1.8 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=6.9
Q ss_pred EEEEEECCCCCCCH
Q ss_conf 48986304322210
Q gi|254781097|r 187 HLLVFGGSQGAKVF 200 (369)
Q Consensus 187 ~ILv~GGS~Ga~~l 200 (369)
++|+.||..|...+
T Consensus 100 ~~llVgGGiGiAPl 113 (281)
T PRK06222 100 TVVCVGGGVGIAPV 113 (281)
T ss_pred EEEEECCCCCCCCH
T ss_conf 39999584331227
No 220
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=85.78 E-value=2.7 Score=21.60 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=43.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 814898630432221023334454432320246606776202551677653221001-1113454444514443004489
Q gi|254781097|r 185 PFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG-CKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 185 ~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~~~~v~~f~~~m~~~~~~aDlv 263 (369)
..++||.|. +...+.+ +..|.+....++.+ ++ +..++.+......+ ..+.+.+| +++.+.+..+|++
T Consensus 12 ~~~vlVIGa----G~~~~~~---~~~L~~~g~~~i~v---~n-Rt~~ka~~la~~~~~~~~~~~~~-~~l~~~l~~~Div 79 (134)
T pfam01488 12 GKKVLLIGA----GEMARLA---AKHLLSKGAKKITI---AN-RTLEKAKELAEEFGGEEVEALPL-DELEELLAEADIV 79 (134)
T ss_pred CCEEEEECC----CHHHHHH---HHHHHHCCCCEEEE---EC-CCHHHHHHHHHHCCCCCEEEEEC-HHHHHHHHHCCEE
T ss_conf 898999996----0999999---99999759988999---54-75789999999849972589851-3544136319999
Q ss_pred EECCCCHH--HH-HHH-HHCCCEEEE
Q ss_conf 97254202--33-345-529604875
Q gi|254781097|r 264 ICRSGALT--VS-EIA-VIGRPAILV 285 (369)
Q Consensus 264 IsraG~~T--i~-E~~-~~g~P~IlI 285 (369)
|+-.++.. +. |.+ ....|.++|
T Consensus 80 I~aT~s~~~ii~~~~~~~~~~~~~ii 105 (134)
T pfam01488 80 ISATSAPTPIITKEMVEEALKGLLFV 105 (134)
T ss_pred EEECCCCCCEECHHHHHHCCCCEEEE
T ss_conf 99259997364899997443985999
No 221
>PRK08643 acetoin reductase; Validated
Probab=85.57 E-value=1.8 Score=22.75 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+ |+.+.+||++|= +.+++++|.+.|..|.+..
T Consensus 1 mn---KvalVTGg~~GI---G~aia~~la~~Ga~V~i~d 33 (256)
T PRK08643 1 MS---KVALVTGAGQGI---GFAIAKRLVEDGFKVAIVD 33 (256)
T ss_pred CC---CEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98---499995757889---9999999998799999996
No 222
>PRK07479 consensus
Probab=85.56 E-value=2.1 Score=22.32 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 1 m~L~gK~alITGgs~GI---G~a~a~~la~~G~~V~i~~ 36 (252)
T PRK07479 1 MRLSGKVAIVTGAGSGF---GEGIAKRFAREGAKVVVAD 36 (252)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98799889993887689---9999999998799999997
No 223
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=85.54 E-value=2.5 Score=21.84 Aligned_cols=47 Identities=34% Similarity=0.537 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
Q ss_conf 99887699987885256207999999999659839999572376762444
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF 50 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~ 50 (369)
|+ |+|++...| |=-.+-+.-+.++|++.|++|.++..+.+.+|+.+.
T Consensus 1 m~--K~IllgvtG-sIAayK~~~lir~L~k~g~~V~vi~T~~A~~fv~~~ 47 (180)
T PRK07313 1 MT--KKILLAVSG-SIAAYKAADLTSQLTKIGYDVTVIMTKAATQFITPL 47 (180)
T ss_pred CC--CEEEEEEEC-HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCHH
T ss_conf 99--769999954-999999999999999889959999774699766987
No 224
>PRK08177 short chain dehydrogenase; Provisional
Probab=85.45 E-value=2.8 Score=21.42 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
||++||++| +.|= +.+++++|.++|+.|....
T Consensus 1 KK~~lITGa-s~GI---G~aia~~l~~~G~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGA-SRGL---GLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CCEEEECCC-CHHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 998999273-4299---9999999998869999997
No 225
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=85.38 E-value=2.1 Score=22.32 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=23.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+++++.-+.=.|-.-...++..|++.||+|.++.
T Consensus 2 ~~~~~~~~~~~~plGl~~la~~l~~~G~~V~~~d 35 (121)
T pfam02310 2 KVVLATVGGDLHPLGLNYVAAALRAAGFEVILLG 35 (121)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 1999960897584899999999998599500102
No 226
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.34 E-value=2.2 Score=22.13 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988769998788525620799999999965983999957
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+-+-|+.+.+||++|= +.+++++|.++|..|.+...
T Consensus 1 ~~L~gK~~lITGgs~GI---G~aia~~la~~G~~Vii~~~ 37 (248)
T PRK05557 1 MSLEGKVALVTGASRGI---GRAIAERLAAQGANVVLNYA 37 (248)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 96799889994897689---99999999987998999969
No 227
>PRK06398 aldose dehydrogenase; Validated
Probab=85.22 E-value=2.1 Score=22.26 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=25.0
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ +-|+.+.+||++|= +.++++.|.+.|..|....
T Consensus 1 M~~L~gKvalVTGgs~GI---G~aia~~la~~Ga~V~~~~ 37 (256)
T PRK06398 1 MRDLRDKVVIVTGGSSGI---GLAIVSRFVDEGSKVVSIS 37 (256)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989998989996878789---9999999998699999994
No 228
>PRK07041 short chain dehydrogenase; Provisional
Probab=85.20 E-value=2.1 Score=22.28 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=24.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+.|+++.+||++|= +.++++.|.+.|.+|.+..
T Consensus 3 ~~l~gK~~lITGgs~GI---G~aia~~la~~Ga~V~i~~ 38 (240)
T PRK07041 3 MSLNDQKVLVVGGSSGI---GLAAARAFAARGADVTIAS 38 (240)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 88599989995778889---9999999998799999995
No 229
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=85.05 E-value=2 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.8
Q ss_pred EEEEEECCCCCCCHH
Q ss_conf 489863043222102
Q gi|254781097|r 187 HLLVFGGSQGAKVFS 201 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln 201 (369)
++|+.||..|...+-
T Consensus 99 ~~llVaGGiG~APl~ 113 (248)
T cd06219 99 TVVFVGGGVGIAPIY 113 (248)
T ss_pred EEEEECCCEECCCHH
T ss_conf 199984735225359
No 230
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=85.03 E-value=2.5 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=26.7
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988--769998788525620799999999965983999957
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+.+ .|+.+.+||++|= +.++++.|.+.|..|.+...
T Consensus 1 M~~~L~gKvalVTGa~~GI---G~aia~~la~~Ga~V~i~~~ 39 (261)
T PRK08936 1 MYSDLEGKVVVITGGSTGL---GRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 9988999989996847789---99999999987999999728
No 231
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=85.02 E-value=1.9 Score=22.62 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988769998788525620799999999965983999957
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++ |+.+.+||++|= +.++++.|.+.|.+|.+...
T Consensus 1 L~~--KvalVTGgs~GI---G~aia~~la~~Ga~Vv~~~~ 35 (246)
T PRK12938 1 MSQ--RIAYVTGGMGGI---GTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCC--CEEEEECCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 950--989991858699---99999999987998999479
No 232
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=85.02 E-value=3 Score=21.29 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=38.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 76999878852562079999999996598399995-72376762444687516875256565331233211100012110
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
.+||++++|. ..++.+.|++.+....+++ |..-... ........|.++.. .++ .. +-
T Consensus 2 ~nILvt~~G~------~~~ii~~lk~~~~~~~Vi~~D~~~~a~-~~~~aD~~y~~P~~----~d~-~y----------~~ 59 (325)
T PRK12767 2 MNILVTSAGR------RVQLVKALKKSLLGGKVIGADISPLAP-ALYFADKFYVVPKV----TDP-NY----------ID 59 (325)
T ss_pred CEEEEECCCC------HHHHHHHHHHCCCCCEEEEECCCCCCC-CHHHCCEEEECCCC----CCH-HH----------HH
T ss_conf 4899986786------899999999769985999968998995-34454889987888----987-89----------99
Q ss_pred HHHHHHHHCCCCEEEEC
Q ss_conf 13555420344424312
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGF 100 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~t 100 (369)
....+++++++|+||-+
T Consensus 60 ~ll~i~~~~~id~iiP~ 76 (325)
T PRK12767 60 ALLDICKKENIDALIPL 76 (325)
T ss_pred HHHHHHHHHCCCEEEEC
T ss_conf 99999998799999977
No 233
>PRK12742 oxidoreductase; Provisional
Probab=84.96 E-value=2.5 Score=21.74 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+. .|++||+ ||++|= +.++++.|.+.|.+|.+..
T Consensus 1 M~~l~gK~alIT-Gas~GI---G~aia~~la~~Ga~V~i~~ 37 (237)
T PRK12742 1 MGAFTGKSVLVL-GGSRGI---GAAIVRRFVTDGANVVFTY 37 (237)
T ss_pred CCCCCCCEEEEE-CCCCHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 999899989992-788799---9999999998799999977
No 234
>PRK08703 short chain dehydrogenase; Provisional
Probab=84.96 E-value=2.2 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=22.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|+|| ++|= +.+++++|.+.|..|.+..
T Consensus 7 K~~lITGa-s~GI---G~aiA~~la~~Ga~V~l~~ 37 (239)
T PRK08703 7 KTILVTGA-SQGL---GEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECC-CCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98999488-6289---9999999998799899997
No 235
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=84.95 E-value=3 Score=21.27 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHCCCEEEE
Q ss_conf 420233345529604875
Q gi|254781097|r 268 GALTVSEIAVIGRPAILV 285 (369)
Q Consensus 268 G~~Ti~E~~~~g~P~IlI 285 (369)
-...+.|+-.+|+|.|.+
T Consensus 168 e~iAv~EA~klgIPVvAl 185 (252)
T COG0052 168 EKIAVKEANKLGIPVVAL 185 (252)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 689999999759998998
No 236
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=84.93 E-value=2.3 Score=22.06 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9988--769998788525620799999999965983999957
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+.+ -|+.+.+||++|= +.++++.|.+.|.+|.+...
T Consensus 2 M~~~l~gKvalITGas~GI---G~aiA~~la~~Ga~V~~~~r 40 (260)
T PRK12823 2 MNQRFAGKVAVVTGAAQGI---GRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 8888799989994886789---99999999987999999969
No 237
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=84.90 E-value=2.5 Score=21.82 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=26.6
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 9988--7699987885256207999999999659839999572
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
|++. -|+.+.+||++|= +.+++++|.+.|.+|.+..+.
T Consensus 2 M~~~L~gK~alVTGgs~GI---G~aia~~la~~Ga~V~i~~~~ 41 (260)
T PRK08416 2 MNNEMKGKTLVISGGTRGI---GKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred CCCCCCCCEEEEECCCHHH---HHHHHHHHHHCCCEEEEECCC
T ss_conf 8877899989996734099---999999999879999998599
No 238
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=84.85 E-value=2.3 Score=22.05 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 988769998788525620799999999965983999957237
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
+.+.++++.+|+++|- +.+++++|.++|+.|.+......
T Consensus 2 ~~~~k~vlITGas~Gi---G~aia~~l~~~G~~v~~~~~~~~ 40 (251)
T COG1028 2 DLSGKVALVTGASSGI---GRAIARALAREGARVVVAARRSE 40 (251)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999889998988718---99999999988997999967973
No 239
>PRK05875 short chain dehydrogenase; Provisional
Probab=84.83 E-value=2.3 Score=22.05 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=25.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.+++++|.+.|.+|.+..
T Consensus 3 l~L~gK~alVTGas~GI---G~aiA~~la~~Ga~Vii~~ 38 (277)
T PRK05875 3 LSLQDRTYLVTGGGSGI---GKGVAAALVAAGAAVMIVG 38 (277)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 46899989994887499---9999999998799899997
No 240
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.78 E-value=2.4 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9988769998788525620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|.-+.|+++.+|+++|= +.+++++|.+.|..|.+. ++..
T Consensus 1 Mdlk~Kv~lITGas~GI---G~aiA~~~A~~Ga~Vii~-~r~~ 39 (227)
T PRK08862 1 MDIKNSIILITSAGSVL---GRTISCHFARLGATLILC-DQDQ 39 (227)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 99999999997988799---999999999879999999-6999
No 241
>PRK06182 short chain dehydrogenase; Validated
Probab=84.74 E-value=2 Score=22.52 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
Q ss_conf 998876999878852562079999999996598399995723767
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARS 45 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~ 45 (369)
|++ |.++|+| +++|= +.+++++|.++|+.|... ++..+.
T Consensus 1 mk~-Kv~lITG-assGI---G~a~a~~la~~G~~V~~~-~r~~~~ 39 (273)
T PRK06182 1 MKK-KVALVTG-ASSGI---GKATARKLIAEGFTVYGA-ARRVDK 39 (273)
T ss_pred CCC-CEEEEEC-CCHHH---HHHHHHHHHHCCCEEEEE-ECCHHH
T ss_conf 946-9899906-32099---999999999879989999-798999
No 242
>PRK06346 consensus
Probab=84.68 E-value=2.4 Score=21.93 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+|||+|= +.++++.|.+.|.+|.+..
T Consensus 1 m~l~gKv~lITGgs~GI---G~a~a~~la~~Ga~V~i~~ 36 (251)
T PRK06346 1 MKLKGKVAIVTGAASGM---GKSIAELFAKEGAKVVVAD 36 (251)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98899889994757889---9999999998799899997
No 243
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=84.62 E-value=3.1 Score=21.17 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=19.0
Q ss_pred CCCHHHHH--CCCEEEECCCCHHHHHHHHHCCCEEEEECC
Q ss_conf 45144430--044899725420233345529604875335
Q gi|254781097|r 251 KDIERYIV--EANLLICRSGALTVSEIAVIGRPAILVPYP 288 (369)
Q Consensus 251 ~~m~~~~~--~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p 288 (369)
.++.+.+. ..|++++.+..--++ ...|+|.+-+-+|
T Consensus 338 ~~~~~~i~~~~pDliig~~~~~~~a--~~~~ip~~~~~~p 375 (399)
T cd00316 338 EELEELIRELKPDLIIGGSKGRYIA--KKLGIPLVRIGFP 375 (399)
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHH--HHCCCCEEECCCC
T ss_conf 9999998716999999794478999--9849988976785
No 244
>PRK06483 short chain dehydrogenase; Provisional
Probab=84.53 E-value=2.1 Score=22.34 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+ |+|||++|+ +|= +.++++.|.++|+.|.+..
T Consensus 1 M~--ktVlVTGas-~GI---G~aiA~~la~~Ga~Vvi~~ 33 (236)
T PRK06483 1 MS--APILITGAG-QRI---GLALAKHLLAQGQPVIVSY 33 (236)
T ss_pred CC--CEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99--879997899-889---9999999998899899995
No 245
>PRK07856 short chain dehydrogenase; Provisional
Probab=84.52 E-value=2.3 Score=22.06 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-+.|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 5 ~l~~K~alITGgs~GI---G~aia~~la~~Ga~V~i~~ 39 (254)
T PRK07856 5 DLTGRVVLVTGGTRGV---GAGISEAFLAAGATVVVCG 39 (254)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 3599989994767689---9999999998799999997
No 246
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.49 E-value=2.6 Score=21.69 Aligned_cols=40 Identities=33% Similarity=0.622 Sum_probs=29.7
Q ss_pred CCCCCEEEEECC-----CCH--HHHHHHHH---HHHHHHHCCCEEEEEEC
Q ss_conf 998876999878-----852--56207999---99999965983999957
Q gi|254781097|r 1 MSENNVILLVAG-----GTG--GHVFPAVA---LSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~g-----GTG--GHi~pala---la~~L~~~g~~v~~~~~ 40 (369)
|+.+++++|++. |.= ||+++-++ +++.++.+|++|.|+++
T Consensus 1 ~~~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtG 50 (558)
T COG0143 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTG 50 (558)
T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99787389955898899986413678887899999999826975899951
No 247
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.41 E-value=2.4 Score=21.86 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.++|.+|.+..
T Consensus 1 M~L~gK~alVTG~s~GI---G~aia~~la~~Ga~V~i~~ 36 (258)
T PRK07890 1 MLLKDKVVVVSGVGPGL---GTTLAVRAAREGADVVLAA 36 (258)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 96899889996856589---9999999998799899997
No 248
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.38 E-value=2.4 Score=21.89 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=24.7
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998-8769998788525620799999999965983999957
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++ +-|+.+.+||++|= +.++++.|.++|..|.+..-
T Consensus 4 M~~L~gKvalITGassGI---G~aiA~~la~~Ga~Vvl~dr 41 (296)
T PRK05872 4 MTSLDGKVVFVTGAARGV---GAELARRLHARGAKVALVDL 41 (296)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 988599879992710589---99999999987998999989
No 249
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=84.35 E-value=2.3 Score=22.08 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=28.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH
Q ss_conf 8769998788525620799999999965983999957237676
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSF 46 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~ 46 (369)
..+|||++|+|| - ++++|+.+.+.|.+|.+. +++.+..
T Consensus 5 gnTiLITGG~sG-I---Gl~lak~f~elgN~VIi~-gR~e~~L 42 (245)
T COG3967 5 GNTILITGGASG-I---GLALAKRFLELGNTVIIC-GRNEERL 42 (245)
T ss_pred CCEEEEECCCCH-H---HHHHHHHHHHHCCEEEEE-CCCHHHH
T ss_conf 767999379643-6---599999999838979996-5749999
No 250
>PRK07045 putative monooxygenase; Reviewed
Probab=84.34 E-value=1.9 Score=22.58 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=27.8
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ +.+|+|+|||-+ ++++|-.|.++|++|.++-
T Consensus 1 m~~~~~dVlIvGaG~a-----Gl~lA~~L~r~G~~v~v~E 35 (388)
T PRK07045 1 MKNNPVDVLINGSGIA-----GVALAHLLGARGHSVTVVE 35 (388)
T ss_pred CCCCCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 9989985899992889-----9999999986799899990
No 251
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=84.18 E-value=3.2 Score=21.04 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=60.7
Q ss_pred CCCHHHHHCCCEEEE---CCCCHHHH-HHHHHCC---CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHH
Q ss_conf 451444300448997---25420233-3455296---0487533552489899989999988988998000199899999
Q gi|254781097|r 251 KDIERYIVEANLLIC---RSGALTVS-EIAVIGR---PAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAE 323 (369)
Q Consensus 251 ~~m~~~~~~aDlvIs---raG~~Ti~-E~~~~g~---P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~ 323 (369)
+++..+|+.||+++. |-|-+.++ |-.+|.. |-+||=-.++ + -|.. ...|.+|...| .+.+++
T Consensus 343 ~~l~alyr~ADv~lVTplRDGMNLVAkEyVa~q~~~~~GvLILSeFa-G-----aa~~---L~~AllVNP~d--~~~~A~ 411 (474)
T PRK10117 343 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA-G-----AANE---LTSALIVNPYD--RDEVAA 411 (474)
T ss_pred HHHHHHHHHCCEEEECCCCCCCCCCCHHEEEEECCCCCEEEEEECCC-C-----CHHH---HCCCEEECCCC--HHHHHH
T ss_conf 99999997466899645434235553010578558998039985341-3-----2667---47686879999--799999
Q ss_pred HHHHHHCCH--HHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH
Q ss_conf 999986189--999999999985278327---999999999999
Q gi|254781097|r 324 ELCSAMKKP--SCLVQMAKQVSMKGKPQA---VLMLSDLVEKLA 362 (369)
Q Consensus 324 ~i~~ll~d~--~~l~~m~~~~~~~~~~~a---a~~i~~~i~~la 362 (369)
+|...+.-| ++.++|+...+.+...+. ++...+.+.++.
T Consensus 412 ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~Fl~~L~~~~ 455 (474)
T PRK10117 412 ALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIT 455 (474)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999769999999999999999986789999999999998641
No 252
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.17 E-value=2.6 Score=21.64 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=25.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.++|..|.+..
T Consensus 1 m~L~gK~~lITGas~GI---G~aiA~~la~~Ga~V~i~~ 36 (253)
T PRK08217 1 MDLKDKVIVITGGAQGL---GRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 97899889994887789---9999999998799899997
No 253
>PRK09224 threonine dehydratase; Reviewed
Probab=84.12 E-value=3.2 Score=21.02 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 998788525620799999999965983999957237
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
+++++. |-| |.++|-.-+..|...+++.+...
T Consensus 71 VV~aSa-GNH---AqgvA~AA~~lgi~atIvMP~tt 102 (504)
T PRK09224 71 VITASA-GNH---AQGVALSAARLGIKAVIVMPVTT 102 (504)
T ss_pred EEEECC-CHH---HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 899897-679---99999999986998899978999
No 254
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.08 E-value=2.3 Score=22.00 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=23.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+ |.++|++|+ +|= +.++++.|.++|..|.+..
T Consensus 1 mn--KvalITG~s-~GI---G~aia~~la~~Ga~V~i~~ 33 (259)
T PRK12384 1 MN--KVAVVIGGG-QTL---GAFLCHGLAEEGYRVAVAD 33 (259)
T ss_pred CC--CEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99--789994688-689---9999999998799999997
No 255
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.07 E-value=2.7 Score=21.55 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9988-76999878852562079999999996598399995
Q gi|254781097|r 1 MSEN-NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~-~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+ |+++|++ |++|= +.++++.|.+.|.+|.+..
T Consensus 1 m~l~gK~~lVTG-as~GI---G~aiA~~la~~Ga~V~i~~ 36 (238)
T PRK05786 1 MRLKGKNVLIVG-VSPGL---GYAVAYFALREGASVYAFA 36 (238)
T ss_pred CCCCCCEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 987998899928-98789---9999999998799999996
No 256
>PRK06198 short chain dehydrogenase; Provisional
Probab=84.05 E-value=2.9 Score=21.36 Aligned_cols=40 Identities=30% Similarity=0.466 Sum_probs=26.8
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 998--87699987885256207999999999659839999572376
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
|.+ .|+++|++ |++|= +.++++.|.+.|-++.++.++..+
T Consensus 1 M~~L~gK~alVTG-as~GI---G~aiA~~la~~Ga~vv~~~~~~~~ 42 (268)
T PRK06198 1 MGRLDGKIALVTG-GTQGL---GAAIARLFAERGAAGLVICGRSAE 42 (268)
T ss_pred CCCCCCCEEEEEC-CCCHH---HHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 9988998899958-57789---999999999879938999629888
No 257
>PRK08017 short chain dehydrogenase; Provisional
Probab=84.04 E-value=3.2 Score=21.00 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=24.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|.++|+||+ +|= +.+++++|.++|+.|.... +..
T Consensus 3 K~vlITGas-sGI---G~a~A~~la~~G~~V~~~~-r~~ 36 (256)
T PRK08017 3 KSVLITGCS-SGI---GLESALELKRQGFRVLAGC-RKP 36 (256)
T ss_pred CEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE-CCH
T ss_conf 789996587-689---9999999998799999996-998
No 258
>PRK12483 threonine dehydratase; Reviewed
Probab=83.98 E-value=3.3 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 998788525620799999999965983999957237
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
+++++ +|-| |.++|-+-+..|..++++.+...
T Consensus 88 VVaaS-aGNH---AqgvA~AA~~lgi~a~IvMP~~t 119 (521)
T PRK12483 88 VITAS-AGNH---AQGVALAAARLGVKAVIVMPRTT 119 (521)
T ss_pred EEEEC-CCHH---HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 79988-7679---99999999976999899936999
No 259
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=83.86 E-value=2.2 Score=22.17 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=14.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 1489863043222102333445443232024660677620
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQV 225 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~ 225 (369)
..|||-||+ |-..+-- .++.+.... ..+.++...
T Consensus 100 ~~vliAgG~-GItP~~s----ml~~l~~~~-~~~~L~y~~ 133 (211)
T cd06185 100 RHLLIAGGI-GITPILS----MARALAARG-ADFELHYAG 133 (211)
T ss_pred CEEEEECCC-CCCHHHH----HHHHHHHCC-CCEEEEEEE
T ss_conf 579996377-6375999----999999769-979999983
No 260
>PRK08278 short chain dehydrogenase; Provisional
Probab=83.65 E-value=2.8 Score=21.42 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 2 m~L~gKvalVTGas~GI---G~aiA~~la~~Ga~Vvi~~ 37 (273)
T PRK08278 2 MSLSGKTLFITGASRGI---GLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 89899989994876599---9999999998799899996
No 261
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=83.55 E-value=2.9 Score=21.38 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH
Q ss_conf 9988769998788525620799999999965983999957237676
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSF 46 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~ 46 (369)
|+-+-|+.+.+||++|= +.+++++|.++|..|... ++..+..
T Consensus 4 ~~l~gK~alITG~s~GI---G~aia~~la~~Ga~V~~~-~r~~~~l 45 (253)
T PRK08220 4 MDFSGKTVWVTGAAQGI---GYAVALAFVEAGAKVIGF-DQAFEQL 45 (253)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEE-ECCHHHH
T ss_conf 89999989995885689---999999999879999999-7887787
No 262
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=83.48 E-value=3.4 Score=20.85 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 87699987885256207999999999659839999572376762444687516875256565331233211100012110
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFI 83 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (369)
+.+|..+++|.. -+.-...+|++.|+.|.++.+....-.-........|..+.. .-
T Consensus 5 ~i~Igqa~efdy----sG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~--------------------~E 60 (400)
T COG0458 5 PIVIGQAAEFDY----SGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPIT--------------------KE 60 (400)
T ss_pred CEEEEEEEEECH----HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCC--------------------HH
T ss_conf 606676411143----678999999866975999728872124780005302662473--------------------78
Q ss_pred HHHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHC------CCCCEEE
Q ss_conf 135554203444243-12653210247888623------4110122
Q gi|254781097|r 84 ASLRLIKKLKPNVVV-GFGGYHSISPLLAGMIL------RIPSMVH 122 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi-~tGGy~s~P~~iaA~~l------~iP~vih 122 (369)
...+++++++||.++ .+||=.+.+..+..+.. +++++.-
T Consensus 61 ~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs 106 (400)
T COG0458 61 PVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGS 106 (400)
T ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCHHHCCCEEEEC
T ss_conf 8999997537662632468741346889987726456449779945
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=83.44 E-value=3 Score=21.20 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=6.3
Q ss_pred CCCEEEEEECC
Q ss_conf 78148986304
Q gi|254781097|r 184 QPFHLLVFGGS 194 (369)
Q Consensus 184 ~~~~ILv~GGS 194 (369)
...+|+++|.+
T Consensus 100 ~~~Nvil~G~~ 110 (258)
T PRK09183 100 RNENIVLLGPS 110 (258)
T ss_pred CCCCEEEECCC
T ss_conf 58867998999
No 264
>PRK06924 short chain dehydrogenase; Provisional
Probab=83.42 E-value=2.9 Score=21.38 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 769998788525620799999999965983999957
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+++|+||+ +|= +.+++++|.++|+.|..+..
T Consensus 2 K~alITGas-~GI---G~aiA~~la~~G~~V~~~~r 33 (251)
T PRK06924 2 RYVIITGTS-KGL---GEAIATQLLEKGTSVISISR 33 (251)
T ss_pred CEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 999992987-499---99999999987999999979
No 265
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=83.41 E-value=1.1 Score=24.18 Aligned_cols=32 Identities=44% Similarity=0.664 Sum_probs=24.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
||+|+||||.|=+. |..|++.+. .+.+|+++-
T Consensus 1 KIvIvGGGTAGWmt-A~~L~~~~~-~~~~ItlIE 32 (457)
T pfam04820 1 KIVIVGGGTAGWMA-AAALARALK-GGLDVTLVE 32 (457)
T ss_pred CEEEECCCHHHHHH-HHHHHHHCC-CCCEEEEEE
T ss_conf 98998987999999-999998659-998799996
No 266
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.26 E-value=3 Score=21.23 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.|.+||++|= +.++++.|.+.|..|.+..
T Consensus 5 ~gKvalVTGgs~GI---G~aia~~la~~Ga~V~i~~ 37 (261)
T PRK08265 5 AGKVAIVTGGATLI---GAAVARALVAAGACVAILD 37 (261)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989994877689---9999999998799899997
No 267
>PRK05717 oxidoreductase; Validated
Probab=83.19 E-value=3 Score=21.23 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+.+.+||++|= +.+++++|.+.|..|.+..
T Consensus 11 KvalITG~s~GI---G~aia~~la~~Ga~V~i~~ 41 (255)
T PRK05717 11 RVALVTGAARGI---GLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 889995878889---9999999998799899996
No 268
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=83.17 E-value=3.5 Score=20.76 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHH--HHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 256207999999999659839999572376--762444687516875256565331233211100012110135554203
Q gi|254781097|r 15 GGHVFPAVALSHELKNRGYAVYLITDRRAR--SFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKL 92 (369)
Q Consensus 15 GGHi~palala~~L~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~ 92 (369)
||.-+-..-+++...+.+..+.+....... .+....-... .+... ...+...-...+++ +.+...-+.
T Consensus 25 GGdpyig~lm~~~~~~~~~~i~vl~~d~i~e~~~v~~v~mmG------AP~v~---iEk~p~g~e~~ra~-e~~~~~~~k 94 (357)
T COG3535 25 GGDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMMG------APIVG---IEKLPNGDEAIRAF-EVLEDYLGK 94 (357)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEHHHCCCCCEEEEECCCC------CCHHH---EEECCCCHHHHHHH-HHHHHHHCC
T ss_conf 998027799999999845973784133267666489841468------86010---01078808999999-999998589
Q ss_pred CCCEEEEC--CCCCCHHHHHHHHHCCCCCE------------------EEC------------CCC--CCHHHHHHHHHH
Q ss_conf 44424312--65321024788862341101------------------221------------532--001567788999
Q gi|254781097|r 93 KPNVVVGF--GGYHSISPLLAGMILRIPSM------------------VHE------------QNV--IMGKANRLLSWG 138 (369)
Q Consensus 93 kPDvVi~t--GGy~s~P~~iaA~~l~iP~v------------------ihE------------qN~--v~G~~nk~l~~~ 138 (369)
+.|.|+|. ||+-|.-+.++|-.+++|++ +|- -|. +=+.+|+|.-|.
T Consensus 95 ~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMtTf~~~g~~~tPlvi~d~~gn~~i~e~v~n~w~ERi 174 (357)
T COG3535 95 PVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMTTFYLHGLPATPLVICDERGNRVIIETVSNKWAERI 174 (357)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEEECCHHHHHH
T ss_conf 60179876008700157999998609966547865556764589999974878874699954898899985032468999
Q ss_pred HHHHHCCC
Q ss_conf 99874134
Q gi|254781097|r 139 VQIIARGL 146 (369)
Q Consensus 139 a~~v~~~~ 146 (369)
++...+.+
T Consensus 175 AR~~tv~~ 182 (357)
T COG3535 175 ARAATVEM 182 (357)
T ss_pred HHHHHHHC
T ss_conf 99999970
No 269
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=83.16 E-value=2.4 Score=21.91 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=15.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 4898630432221023334454432320246606776202
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVR 226 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g 226 (369)
++|+.||..|...+.. .++.+.+.. ..+.++.+..
T Consensus 102 ~~llVaGGiGiAPl~~----l~~~l~~~~-~~v~~i~G~r 136 (248)
T PRK00054 102 KVLLVGGGIGVAPLYE----LAKQLKAKG-VEVTTVLGAR 136 (248)
T ss_pred EEEEEECCCCCCCHHH----HHHHHHHCC-CCEEEEEECC
T ss_conf 1999967674576899----999999729-9779999758
No 270
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=83.15 E-value=3.5 Score=20.76 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=38.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
Q ss_conf 99887699987885256207999999999659839999572376762444
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF 50 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~ 50 (369)
|=+.|+|++...| |=-.|-+.-|++.|+++|++|.++-.+.+.+|+.+.
T Consensus 1 mL~gK~IllgVtG-sIAayK~~~L~r~L~k~G~~V~vvmT~~A~~fi~pl 49 (392)
T PRK05579 1 MLAGKRIVLGVSG-GIAAYKALELVRRLRKAGADVRVVMTEAALKFVTPL 49 (392)
T ss_pred CCCCCEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHH
T ss_conf 9999989999833-799999999999998789989999885375427998
No 271
>PRK06194 hypothetical protein; Provisional
Probab=83.02 E-value=3.1 Score=21.16 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=24.6
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ .|.++|+||+ +|= +.++++.|.++|..|.+..
T Consensus 1 M~~l~gKvavITGas-sGI---G~a~A~~la~~Ga~Vvl~d 37 (301)
T PRK06194 1 MKDFAGKVAVITGAA-SGF---GREFARIGARLGMKLVLAD 37 (301)
T ss_pred CCCCCCCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989899989992737-799---9999999998799899997
No 272
>PRK06057 short chain dehydrogenase; Provisional
Probab=83.01 E-value=3 Score=21.22 Aligned_cols=36 Identities=19% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9988--76999878852562079999999996598399995
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++ -|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~~rL~gKvalVTGas~GI---G~aia~~la~~Ga~Vvi~d 38 (255)
T PRK06057 1 LSQRLAGRVAVITGGASGI---GLATARRMRAEGATVVVGD 38 (255)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9988899989996848889---9999999998699899996
No 273
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=83.00 E-value=2.9 Score=21.35 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=15.5
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECC
Q ss_conf 148986304322210233344544323202-466067762025
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQ-RKRLVIMQQVRE 227 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~-~~~~~v~~~~g~ 227 (369)
..|||-||+ |-..+-.. +..+.+.. ...+.+++.+..
T Consensus 111 ~~vlIAgG~-GItP~~s~----l~~l~~~~~~~~v~l~~~~r~ 148 (238)
T cd06211 111 PIIFIAGGS-GLSSPRSM----ILDLLERGDTRKITLFFGART 148 (238)
T ss_pred CEEEEECCC-CCCHHHHH----HHHHHHCCCCCEEEEEECCCC
T ss_conf 789997487-72459999----999997599964999942688
No 274
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.00 E-value=2.6 Score=21.62 Aligned_cols=35 Identities=29% Similarity=0.615 Sum_probs=24.6
Q ss_pred CCC-CCEEEEECCCC--HHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 998-87699987885--256207999999999659839999
Q gi|254781097|r 1 MSE-NNVILLVAGGT--GGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 1 M~~-~~~ili~~gGT--GGHi~palala~~L~~~g~~v~~~ 38 (369)
|++ +-|+.+.+||+ +|- +.+++++|.+.|.+|.+.
T Consensus 1 M~~L~gKvalVTGas~~~GI---G~aiA~~la~~Ga~Vvi~ 38 (257)
T PRK12859 1 MNQLKNKVAVVTGVSRLDGI---GAAICKELAEAGYDIFFT 38 (257)
T ss_pred CCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCCEEEEE
T ss_conf 99889888999288999862---999999999879989998
No 275
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=82.99 E-value=3.3 Score=20.90 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=23.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+.+.+|+++|= +.++++.|.++|..|.+...
T Consensus 3 KvalITGas~GI---G~a~a~~la~~G~~Vv~~~~ 34 (245)
T PRK12824 3 KIALVTGAKRGI---GSAIARELLADGYRVIATYF 34 (245)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 599994788889---99999999987998999958
No 276
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.87 E-value=3.6 Score=20.69 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=47.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78148986304322210233344544323202466067762025516776532210011113454444514443004489
Q gi|254781097|r 184 QPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 184 ~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlv 263 (369)
...++||+|. +...+. +++.|.+.+..++.|. + +..++........+ ....+| +++.+.+..+|++
T Consensus 177 ~~~~vLviGa----Gem~~l---~~~~L~~~g~~~i~v~---n-Rt~~ra~~la~~~g--~~~~~~-~~l~~~l~~~Dvv 242 (311)
T cd05213 177 KGKKVLVIGA----GEMGEL---AAKHLAAKGVAEITIA---N-RTYERAEELAKELG--GNAVPL-DELLELLNEADVV 242 (311)
T ss_pred CCCEEEEECC----CHHHHH---HHHHHHHCCCCEEEEE---C-CCHHHHHHHHHHCC--CEEECH-HHHHHHHHHCCEE
T ss_conf 1167999868----799999---9999996599825997---6-86789999999749--899729-9999999768999
Q ss_pred EECCCCHHH---HHHH---HHCCCEEEEE
Q ss_conf 972542023---3345---5296048753
Q gi|254781097|r 264 ICRSGALTV---SEIA---VIGRPAILVP 286 (369)
Q Consensus 264 IsraG~~Ti---~E~~---~~g~P~IlIP 286 (369)
||--|+... .|-+ ..+.|+++|=
T Consensus 243 isaT~s~~~~~~~~~~~~~~~~~~~~iiD 271 (311)
T cd05213 243 ISATGAPHYAKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 99279996203599997534799769999
No 277
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.85 E-value=3.1 Score=21.12 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ +-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 1 M~~~L~~KvalVTGgs~GI---G~aia~~la~~Ga~Vvi~~ 38 (250)
T PRK12939 1 MASSLAGKRALVTGAARGL---GAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999879995836689---9999999998799999996
No 278
>PRK06138 short chain dehydrogenase; Provisional
Probab=82.83 E-value=3.1 Score=21.10 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 m~L~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~~ 36 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGI---GRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98899889994746799---9999999998799899996
No 279
>PRK12828 short chain dehydrogenase; Provisional
Probab=82.71 E-value=3.2 Score=21.07 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=26.9
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+. +-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~~~L~gKvalITGas~GI---G~aia~~la~~Ga~V~i~~ 38 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGL---GRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9999698989994725489---9999999998799899997
No 280
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=82.51 E-value=3.7 Score=20.59 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred EEEEECCCCHHHHHHHH-HHHHHHHHCCCEEEEEECHHHHHHH---CCC-CCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 69998788525620799-9999999659839999572376762---444-687516875256565331233211100012
Q gi|254781097|r 6 VILLVAGGTGGHVFPAV-ALSHELKNRGYAVYLITDRRARSFI---TDF-PADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 6 ~ili~~gGTGGHi~pal-ala~~L~~~g~~v~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
+||++=-- |--.|++ +|++.|. +.++|+++.+.+-.+-. ... .......+... ..+..+..--.-.-
T Consensus 2 ~ILlTNDD--Gi~a~Gi~~L~~~l~-~~~~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~-----~~~~~y~v~GTPaD 73 (255)
T PRK13935 2 NILVTNDD--GVTSKGILCLARYLS-KKHEVFVVAPEKEQSATGHAITLRVPLWAKKVDIN-----ERFEIYAVTGTPAD 73 (255)
T ss_pred EEEEECCC--CCCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC-----CCCCEEEECCCHHH
T ss_conf 69997079--989778999999985-29939999279987678656424887047874048-----88418993698489
Q ss_pred CCHHHHHHHHHCCCCEEEE---CCC----CC--C--HHHHHHHHHCCCCCEE
Q ss_conf 1101355542034442431---265----32--1--0247888623411012
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVG---FGG----YH--S--ISPLLAGMILRIPSMV 121 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~---tGG----y~--s--~P~~iaA~~l~iP~vi 121 (369)
.+.-++..+.+.+||+||| .|. -+ | +.+.+-|.+++||.+-
T Consensus 74 CV~lal~~l~~~~pDLVvSGIN~G~NlG~dv~YSGTVgAA~Eg~l~GipsIA 125 (255)
T PRK13935 74 CVKIGYDVIMKKKPDLVISGINRGPNLGTDVLYSGTVSGALEGAIAGVPSIA 125 (255)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEE
T ss_conf 9999986405899988996874887777137720036778989754998699
No 281
>PRK07588 hypothetical protein; Provisional
Probab=82.50 E-value=2.1 Score=22.31 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=24.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 699987885256207999999999659839999
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
||+|++||-+ ++++|-.|.++|++|.++
T Consensus 2 kVlIvGaGia-----GLalA~~L~r~G~~v~V~ 29 (391)
T PRK07588 2 KIAISGAGIA-----GATLAHWLQRTGHEPTLI 29 (391)
T ss_pred EEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 7999993289-----999999998689998999
No 282
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=82.47 E-value=3 Score=21.23 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=26.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 5 ~~L~gKvalVTGgs~GI---G~aia~~la~~Ga~V~~~d 40 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGI---GLAIVEELLAQGANVQMVD 40 (266)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 38999979994778789---9999999998799999997
No 283
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.39 E-value=3.4 Score=20.81 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8769998788525620799999999965983999957
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+|+|+|+|+++ |= +.+++++|.++|++|.+.+-
T Consensus 2 ~K~vlITGAss-GI---G~alA~~la~~G~~v~l~~r 34 (248)
T PRK08251 2 RQKILITGASS-GL---GAGMAREFAAKGRDLALCAR 34 (248)
T ss_pred CCEEEEECCCC-HH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 99899947863-99---99999999987998999989
No 284
>pfam02441 Flavoprotein Flavoprotein. This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyses the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase (EC:4.1.1.-).
Probab=82.35 E-value=3.8 Score=20.55 Aligned_cols=45 Identities=36% Similarity=0.441 Sum_probs=32.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
Q ss_conf 7699987885256207999999999659839999572376762444
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF 50 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~ 50 (369)
++|++...|. ...+-+..+.++|++.|++|.++..+.++.++.+.
T Consensus 1 kri~l~itGs-~~a~~~~~ll~~L~~~~~~v~vv~S~~A~~~~~~~ 45 (118)
T pfam02441 1 KKILLGITGS-SAAIKALRLLRELKKEGAEVRVILSKAAKKFITPE 45 (118)
T ss_pred CEEEEEEECH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHH
T ss_conf 9799999178-99999999999998789979999762698767776
No 285
>PRK12827 short chain dehydrogenase; Provisional
Probab=82.18 E-value=3.3 Score=20.93 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=25.6
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ +-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 1 M~~L~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~~ 37 (251)
T PRK12827 1 MASLDSRRVLITGGSGGL---GRAIAVRLAADGADVIVLD 37 (251)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989899889996825589---9999999998799899984
No 286
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.17 E-value=3.4 Score=20.87 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|+ ||++|= +.++++.|.+.|.+|.+..
T Consensus 10 K~~lVT-G~~~GI---G~aia~~la~~Ga~V~~~~ 40 (245)
T PRK07060 10 KSVLVT-GASSGI---GRACAVALAARGARVVAAA 40 (245)
T ss_pred CEEEEE-CCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989994-777689---9999999998799999997
No 287
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=82.14 E-value=1.5 Score=23.40 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
.|||+|| ++|= +++++++|.+++.++.+...
T Consensus 2 nVLITGa-s~GI---G~aia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 2 NILIVGG-SGGI---GKAMVKQLLETYPDATVHAT 32 (235)
T ss_pred EEEEECC-CHHH---HHHHHHHHHHCCCCEEEEEE
T ss_conf 7999755-6399---99999999856998099997
No 288
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.12 E-value=3 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++ |.++|+||++ |= +.+++.+|.++|+.|....
T Consensus 1 l~~-K~alITGass-GI---G~a~A~~la~~G~~V~~~~ 34 (280)
T PRK06914 1 MNK-KIAIITGASS-GF---GLLTTLELAKKDYLVIATM 34 (280)
T ss_pred CCC-CEEEEECCCC-HH---HHHHHHHHHHCCCEEEEEE
T ss_conf 951-9899907344-99---9999999998799899998
No 289
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=82.07 E-value=3.5 Score=20.77 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 13555420344424312653210
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSI 106 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~ 106 (369)
...+++++.|||+||.+-.|+.+
T Consensus 41 ~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 41 AVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred HHHHHHHHHCCCEEEECCCCCCC
T ss_conf 99999986199989987320365
No 290
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.99 E-value=3.5 Score=20.76 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8876999878852562079999999996598399995
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
-+-|+.+.+||++|= +.+++++|.+.|.+|.+..
T Consensus 9 L~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~~ 42 (255)
T PRK06113 9 LDGKCAIITGAGAGI---GKEIAITFATAGASVVVSD 42 (255)
T ss_pred CCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 999989995887789---9999999998799999996
No 291
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=81.94 E-value=3.9 Score=20.45 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHCCCEEE----EECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 2542023334552960487----53355248989998999998898
Q gi|254781097|r 266 RSGALTVSEIAVIGRPAIL----VPYPHSVDQDQLHNAYYLQEGGG 307 (369)
Q Consensus 266 raG~~Ti~E~~~~g~P~Il----IP~p~a~~~hQ~~NA~~l~~~G~ 307 (369)
|+|.+-+.|++.-|+=++= .|+|- |..=-+.|+++..
T Consensus 411 rGG~~GL~E~Ah~GTLFLDEIGEmPLPL-----QtRLLRVLeEreV 451 (658)
T TIGR02329 411 RGGRTGLIEAAHRGTLFLDEIGEMPLPL-----QTRLLRVLEEREV 451 (658)
T ss_pred CCCCCCHHHHHCCCCEEEHHHCCCCCHH-----HHHHHHHHHCCCE
T ss_conf 6776122220057951001003578614-----6777776512214
No 292
>PRK06482 short chain dehydrogenase; Provisional
Probab=81.87 E-value=3.2 Score=21.01 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 99887699987885256207999999999659839999572376
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
|+ |+++|+|+. +|= +.++++.+.++|+.|... .++.+
T Consensus 1 M~--Kv~lITGaS-sGi---G~ala~~l~~~G~~Vi~t-~R~~~ 37 (276)
T PRK06482 1 MT--KTWFITGAS-SGF---GRGLTERLLARGDRVAAT-VRRPD 37 (276)
T ss_pred CC--CEEEEECCC-CHH---HHHHHHHHHHCCCEEEEE-ECCHH
T ss_conf 99--789991586-599---999999999889989999-78989
No 293
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=81.74 E-value=3.2 Score=21.01 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=14.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 14898630432221023334454432320-246606776202
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVR 226 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g 226 (369)
..++|-|| -|-..+-..+ +.+.+. ....+.+++...
T Consensus 109 ~~llIAgG-~GItP~~s~l----~~~~~~~~~~~i~l~~g~r 145 (235)
T cd06217 109 PVVLLAGG-SGIVPLMSMI----RYRRDLGWPVPFRLLYSAR 145 (235)
T ss_pred CEEEEECC-CCCCHHHHHH----HHHHHHCCCCCEEEEEECC
T ss_conf 58999458-7757699999----9999709997389997259
No 294
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.71 E-value=3.5 Score=20.81 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 4 ~~L~gK~alVTGgs~GI---G~aia~~la~~Ga~V~i~~ 39 (260)
T PRK07576 4 FRLAGKNVFVVGGTSGI---NLGIAQAFARAGANVAVAS 39 (260)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 42389989995896199---9999999998799999997
No 295
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.71 E-value=3 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=24.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 69998788525620799999999965983999957237
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+.+.+||++|= +.+++++|.+.|.+|.+. ++..
T Consensus 4 K~alVTGgs~GI---G~aia~~la~~Ga~V~i~-~r~~ 37 (254)
T PRK07677 4 KVVIITGGSSGM---GKAMAKRFAEEGANVVIT-GRTK 37 (254)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 989995876789---999999999879999999-6999
No 296
>pfam00365 PFK Phosphofructokinase.
Probab=81.60 E-value=4 Score=20.37 Aligned_cols=98 Identities=17% Similarity=0.090 Sum_probs=45.6
Q ss_pred CEEEEEC-CCC-HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCC-----CCCHHHHHHH-HH
Q ss_conf 7699987-885-25620799999999965983999957237676244468751687525656-----5331233211-10
Q gi|254781097|r 5 NVILLVA-GGT-GGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVR-----FSNPFVFWNS-LV 76 (369)
Q Consensus 5 ~~ili~~-gGT-GGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-l~ 76 (369)
|||-|.+ ||. .|=.....++.+.....|++|+-+- .+.+..+... +.++....+. +-..+..-+. .+
T Consensus 1 KrI~IltsGG~~pG~Na~i~~vv~~a~~~g~~v~G~~-~G~~GL~~~~----~~~l~~~~v~~~~~~gGt~LgtsR~~~~ 75 (279)
T pfam00365 1 KKIGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIY-EGYAGLVAGN----IKQLDWESVSDIIQRGGTFIGSARCPEF 75 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCHHHHHCCC----EEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9599990788866789999999999987799999990-5677882698----2409888898899659841246677755
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 0012110135554203444243126532102
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVGFGGYHSIS 107 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P 107 (369)
.--....++...+++++.|.++.-||.-|+-
T Consensus 76 ~~~~~~~~~~~~l~~~~Id~li~IGGd~S~~ 106 (279)
T pfam00365 76 REREGRLKAAENLKKHGIDALVVIGGDGSYT 106 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 4566799999999984899799966956899
No 297
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=81.57 E-value=3.6 Score=20.71 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=62.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH------HC---CCCCCCCCCC---CC------
Q ss_conf 630432221023334454432320246606776202551677653221------00---1111345444---45------
Q gi|254781097|r 191 FGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYD------EL---GCKATLACFF---KD------ 252 (369)
Q Consensus 191 ~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~---~~~~~v~~f~---~~------ 252 (369)
||||.|+.. .+.+.+++....+...+.+.+..-+|.+-.+.+-.... .. ..+. =.+|+ .|
T Consensus 155 mGGSMGsvv-GEki~ra~e~A~~~k~PlIi~saSGGARMQEGilSLMQMaKts~Al~~~~~~~-~lpyIsvlt~PTtGGV 232 (305)
T CHL00174 155 MGGSMGSVV-GEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNK-KLFYISILTSPTTGGV 232 (305)
T ss_pred CCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCC
T ss_conf 156520788-99999999999973997899907876343462778987799999999998457-8738999737887780
Q ss_pred CHHHHHCCCEEEECCCCHHHHHHHHHCCCEEE----EECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHH
Q ss_conf 14443004489972542023334552960487----53355248989998999998898899800019989999999998
Q gi|254781097|r 253 IERYIVEANLLICRSGALTVSEIAVIGRPAIL----VPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSA 328 (369)
Q Consensus 253 m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~Il----IP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~l 328 (369)
.+.+-...|++|.-+|+. ...+|.-.|= -.+| +|-| -|++|.+.|.--.|- ....|.+.+.++
T Consensus 233 tASfA~lgDiiiAEP~Al----IGFAG~RVIeqTi~~~LP---egFQ--taEfllehG~iD~IV----~R~~lk~~l~~l 299 (305)
T CHL00174 233 TASFGMLGDIIIAEPNAY----IAFAGKRVIEQTLNKTVP---EGSQ--AAEYLFHKGLFDLIV----PRNLLKGVLSEL 299 (305)
T ss_pred EEEECCCCCEEEECCCCE----EEECCCHHHHHHHCCCCC---CCCC--CHHHHHHCCCCCEEE----CHHHHHHHHHHH
T ss_conf 124102566589758866----760561788886189899---8632--269999779971676----589999999999
Q ss_pred HC
Q ss_conf 61
Q gi|254781097|r 329 MK 330 (369)
Q Consensus 329 l~ 330 (369)
|+
T Consensus 300 L~ 301 (305)
T CHL00174 300 FQ 301 (305)
T ss_pred HH
T ss_conf 98
No 298
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.44 E-value=3.6 Score=20.71 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 2 ~~L~gK~alVTGgs~Gi---G~aia~~la~~Ga~V~i~~ 37 (250)
T PRK07774 2 FDFDDKVAIVTGAAGGI---GQAYAEALAREGASVVVAD 37 (250)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 07799889997976889---9999999998699999997
No 299
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.40 E-value=3.8 Score=20.55 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=23.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|++ |++|= +.++++.|.+.|.+|.+..
T Consensus 8 K~alITG-~s~GI---G~aiA~~la~~Ga~V~i~~ 38 (259)
T PRK06125 8 KRVLITG-ASKGI---GAAAAEAFAAEGCHLVLAA 38 (259)
T ss_pred CEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9899968-77689---9999999998799899997
No 300
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.35 E-value=3.9 Score=20.41 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 MrL~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~d 36 (256)
T PRK07067 1 MRLQGKVALLTGAASGI---GEAVAQRYLREGARVVLAD 36 (256)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99899889993767789---9999999998799999997
No 301
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.21 E-value=3.9 Score=20.46 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 5 ~~L~gKvalVTGas~GI---G~aiA~~la~~Ga~V~i~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGL---GQRFAQVLSQAGAKVVLAS 40 (258)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 87899989995857799---9999999998799999996
No 302
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=81.14 E-value=4.1 Score=20.26 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=4.8
Q ss_pred HHHHCCCEEE
Q ss_conf 4430044899
Q gi|254781097|r 255 RYIVEANLLI 264 (369)
Q Consensus 255 ~~~~~aDlvI 264 (369)
.-+..+|++|
T Consensus 104 ~~~~~~dlLI 113 (178)
T pfam01695 104 QRLAKADLLI 113 (178)
T ss_pred HHHHCCCEEE
T ss_conf 9962589788
No 303
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=81.04 E-value=2.8 Score=21.47 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=13.8
Q ss_pred CCCCE-EE-ECCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 34442-43-12653210247888623411012
Q gi|254781097|r 92 LKPNV-VV-GFGGYHSISPLLAGMILRIPSMV 121 (369)
Q Consensus 92 ~kPDv-Vi-~tGGy~s~P~~iaA~~l~iP~vi 121 (369)
.+|.- || .|-|-......++|..++.++++
T Consensus 59 l~pG~tIVE~TSGNTGIaLA~vaa~~Gy~~~i 90 (300)
T COG0031 59 LKPGGTIVEATSGNTGIALAMVAAAKGYRLII 90 (300)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 79999899708972799999999981992899
No 304
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.97 E-value=4 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+|+|+||+ +|= +.++|++|.++|++|.+++
T Consensus 2 K~vlITGas-sGI---G~a~A~~la~~G~~v~l~~ 32 (243)
T PRK07102 2 KKILIIGAT-SDI---ARACARRYAAAGARLYLAA 32 (243)
T ss_pred CEEEEECCC-HHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 979991574-599---9999999998799899998
No 305
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=80.79 E-value=3.6 Score=20.68 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=15.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEECCC
Q ss_conf 14898630432221023334454432320-24660677620255
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVRED 228 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g~~ 228 (369)
..+||-||+ |-..+-.. ++.+.+. ....+.+++.+...
T Consensus 105 ~~vliAgG~-GitP~~sm----l~~~~~~~~~~~v~l~~g~r~~ 143 (232)
T cd06212 105 PIVLIGGGS-GMAPLLSL----LRDMAASGSDRPVRFFYGARTA 143 (232)
T ss_pred CEEEEECCC-CCCHHHHH----HHHHHHCCCCCEEEEEEECCCH
T ss_conf 789995687-70259999----9999974999748999844887
No 306
>PRK07035 short chain dehydrogenase; Provisional
Probab=80.75 E-value=4.1 Score=20.32 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 5 ~L~gKvalITGas~GI---G~aia~~la~~Ga~V~i~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGI---GEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 6789989995887499---9999999998799899997
No 307
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=80.74 E-value=4.3 Score=20.17 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCE--EE-EEECHHHHHHHCCC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 69998788525620799999999965983--99-99572376762444--687516875256565331233211100012
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYA--VY-LITDRRARSFITDF--PADSIYEIVSSQVRFSNPFVFWNSLVILWK 80 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~--v~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (369)
||.+-++|+ |+. +.++.+++++.+++ +. +++++....-+... .+.....+......... .
T Consensus 2 kiavl~SG~-Gsn--l~~Il~a~~~~~l~~~I~~Visn~~~~~~~~~a~~~~ip~~~~~~~~~~~r~------------~ 66 (181)
T pfam00551 2 KIAVLISGT-GSN--LQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVEVFEHKNFTPRS------------Q 66 (181)
T ss_pred EEEEEECCC-CHH--HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHH------------H
T ss_conf 899999079-665--9999999981999988999995895728888999859998980677899834------------6
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 110135554203444243126532
Q gi|254781097|r 81 AFIASLRLIKKLKPNVVVGFGGYH 104 (369)
Q Consensus 81 ~~~~~~~ii~~~kPDvVi~tGGy~ 104 (369)
.-.+....+++++||+|++. ||.
T Consensus 67 ~~~~~~~~l~~~~~Dliv~~-g~~ 89 (181)
T pfam00551 67 FDSELADSLAALAPDLIVLA-GYM 89 (181)
T ss_pred HHHHHHHHHHHHCCCEEEEE-CHH
T ss_conf 18999999997499999980-163
No 308
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550 L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=80.67 E-value=4.3 Score=20.16 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCC---CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 556673253044432456543334433114478---14898630432221023334454432320246606776202551
Q gi|254781097|r 153 VLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQP---FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDD 229 (369)
Q Consensus 153 ~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~---~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~ 229 (369)
+..+++.|--.|+|+.=. +.++.-..+++| +.|-|+=+=||. | =...++.+.+.+...+++- +.|..+
T Consensus 209 ~~n~~i~y~~~P~~kht~---~t~F~~s~L~~p~~LP~V~IiY~y~~~---n--p~~~~~A~~d~Ga~GIV~A-G~GnGs 279 (360)
T TIGR00520 209 IHNGKIDYYYPPVRKHTT---DTPFDVSNLDEPFKLPKVDIIYAYQNA---N--PPLLVKAVVDAGAKGIVLA-GVGNGS 279 (360)
T ss_pred EECCEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCEEEEEECCCCC---C--HHHHHHHHHHCCCCEEEEE-ECCCCC
T ss_conf 762715641366788886---775233007786638803787123477---8--7789999996689848996-137655
Q ss_pred H-HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECC
Q ss_conf 6-7765322100111134544445144430044899725
Q gi|254781097|r 230 K-EKVQKQYDELGCKATLACFFKDIERYIVEANLLICRS 267 (369)
Q Consensus 230 ~-~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsra 267 (369)
. +.. .+-+.+.++..-++|-||
T Consensus 280 l~~~~----------------~~~~~~a~k~~Gv~iVrS 302 (360)
T TIGR00520 280 LSAAA----------------LKVNETAAKEGGVPIVRS 302 (360)
T ss_pred CCHHH----------------HHHHHHHHHCCCEEEEEE
T ss_conf 01688----------------999999997188279974
No 309
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=80.64 E-value=1.6 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999996598399995
Q gi|254781097|r 21 AVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 21 alala~~L~~~g~~v~~~~ 39 (369)
...+|..|++.||+|.+..
T Consensus 5 l~ylaa~L~~~G~~v~~~d 23 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHD 23 (127)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997899579985
No 310
>pfam09651 Cas_APE2256 CRISPR-associated protein (Cas_APE2256). This entry represents a conserved region of about 150 amino acids found in at least five archaeal and three bacterial species. These species all contain CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.
Probab=80.62 E-value=4.3 Score=20.14 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=21.2
Q ss_pred CEEE-ECCCCCCHH--HHHHHHHCCCCC-EEECCC
Q ss_conf 4243-126532102--478886234110-122153
Q gi|254781097|r 95 NVVV-GFGGYHSIS--PLLAGMILRIPS-MVHEQN 125 (369)
Q Consensus 95 DvVi-~tGGy~s~P--~~iaA~~l~iP~-vihEqN 125 (369)
+++| -||||=+.- +.++|...++|+ +|||+.
T Consensus 93 ~v~~N~TGGfK~e~~~~~~~g~~~~~~v~Yi~E~~ 127 (136)
T pfam09651 93 KVYINATGGFKAETAFLVLLGSLGADPVYYIHESF 127 (136)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 49998688820599999999996578579996067
No 311
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=80.59 E-value=4.2 Score=20.23 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=25.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|..|....
T Consensus 1 ~~L~gK~alVTG~s~GI---G~aia~~la~~GA~V~~~d 36 (261)
T PRK12428 1 MRLDGKTIVVTGVASGI---GAEVARLLRFLGARVIGLD 36 (261)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98999889997857799---9999999998699999996
No 312
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=80.58 E-value=4 Score=20.36 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCCCCCCC--CCCCCHHHHH--CCCEEEECCCCHHHHHHHHHCCCEEEEECCC
Q ss_conf 776532210011113454--4445144430--0448997254202333455296048753355
Q gi|254781097|r 231 EKVQKQYDELGCKATLAC--FFKDIERYIV--EANLLICRSGALTVSEIAVIGRPAILVPYPH 289 (369)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~--f~~~m~~~~~--~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~ 289 (369)
+.+++.......+..+.. -..++.+++. .+|++++.+=.--+ +.-.|+|.+-|=||.
T Consensus 340 ~~~~~~~~~~~~~~~v~~~~d~~el~~~i~~~~~dliig~s~~k~i--A~klgiP~l~ig~P~ 400 (429)
T cd03466 340 EKLEEDLKEYVEKCVILDGADFFDIESYAKELKIDVLIGNSYGRRI--AEKLGIPLIRIGFPI 400 (429)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCHHHH--HHHHCCCEEEECCCC
T ss_conf 9999999745898489828999999999976599999978526899--998099979946862
No 313
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=80.57 E-value=4.3 Score=20.14 Aligned_cols=205 Identities=16% Similarity=0.174 Sum_probs=89.4
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEE-CCCCCCHHHHHHHHHCCCCCEEE--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00121101355542034442431-26532102478886234110122--1532001567788999998741343222235
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVG-FGGYHSISPLLAGMILRIPSMVH--EQNVIMGKANRLLSWGVQIIARGLVSSQKKV 153 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~-tGGy~s~P~~iaA~~l~iP~vih--EqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~ 153 (369)
+..-++++..++..+.|-.=|+. --|-|+=-+.+||+..+||-.|= |. +.|.+.+.--+
T Consensus 31 KiRGA~nKi~~LSe~~~~~GVvaASAGNHAQGVA~AA~~~Gi~a~IVMPE~-aP~~Kv~AT~~----------------- 92 (381)
T TIGR01127 31 KIRGALNKIAKLSEDQRKRGVVAASAGNHAQGVALAAKVFGIKAKIVMPEY-APLSKVKATKS----------------- 92 (381)
T ss_pred CCHHHHHHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECCCC-CHHHHHHHHHH-----------------
T ss_conf 101146788762553134755775045437899999876187746878876-73578999762-----------------
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHC------CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5667325304443245654333443311------4478148986304322210233344544323202466067762025
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSD------LDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~------~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
+...+++-|.-..+.+.-..+.. +..+ +|+++ ||-| ||. ...|+++.+++ ....|+=++|.
T Consensus 93 yGAEViL~G~~~DEA~~~A~~~~-~~~g~~fvHpF~D~~---vmAG-QGT-----igLEi~ed~pd---~D~viVPVGGG 159 (381)
T TIGR01127 93 YGAEVILHGADYDEAYALAEELA-EEEGRVFVHPFDDEY---VMAG-QGT-----IGLEIMEDLPD---VDTVIVPVGGG 159 (381)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH-HHCCCEEEEECCCCE---EEEC-CCH-----HHHHHHHCCCC---CCEEEEEECCC
T ss_conf 69618980887078999999999-860987874058877---8616-748-----99999964798---13799841787
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHCCCE--EEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHH-HHHHH
Q ss_conf 5167765322100111134544-4451444300448--997254202333455296048753355248989998-99999
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACF-FKDIERYIVEANL--LICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHN-AYYLQ 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f-~~~m~~~~~~aDl--vIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~N-A~~l~ 303 (369)
..-..+....+...++++|.+= .+.++.+++.=+- ....-+.-|+++-++.+.| |.|.+| ++-+.
T Consensus 160 GLISGv~~a~K~~~P~VkvIGV~aE~ap~m~~Sl~~Gk~~~v~~~~tiADGIaVk~p-----------G~lTF~i~k~~V 228 (381)
T TIGR01127 160 GLISGVASAAKKLNPEVKVIGVEAEGAPSMVESLREGKIKAVESVDTIADGIAVKKP-----------GDLTFNIVKEYV 228 (381)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEECCCEECCC-----------CCCCHHHHHHHC
T ss_conf 128799999987289947998602785589999851990560456414152116378-----------876747899747
Q ss_pred HCCCEEEEEHHCCCHHHHHHHHHHHHC
Q ss_conf 889889980001998999999999861
Q gi|254781097|r 304 EGGGAKVITENFLSPERLAEELCSAMK 330 (369)
Q Consensus 304 ~~G~a~~i~~~~~~~~~l~~~i~~ll~ 330 (369)
|.=.+ ++.|++++++.-||+
T Consensus 229 D~~V~-------V~eeEIA~A~~~LLE 248 (381)
T TIGR01127 229 DEVVA-------VDEEEIAKAILLLLE 248 (381)
T ss_pred CCEEE-------ECHHHHHHHHHHHHC
T ss_conf 97088-------473779999999860
No 314
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=80.55 E-value=4.1 Score=20.29 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=59.8
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH------------HHCCCCCCCC---CCCC-CCH
Q ss_conf 63043222102333445443232024660677620255167765322------------1001111345---4444-514
Q gi|254781097|r 191 FGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQY------------DELGCKATLA---CFFK-DIE 254 (369)
Q Consensus 191 ~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~------------~~~~~~~~v~---~f~~-~m~ 254 (369)
||||.|+.. .+.+..++....+...+-+.+...+|.+-.+.+.... .+.+..+.+. +-+- -.+
T Consensus 136 ~GGSmG~~~-GEki~~a~e~A~~~~~PlI~~~~SGGaRMQEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt~PttGGvtA 214 (288)
T PRK05654 136 MGGSMGSVV-GEKIVRAVERALEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSA 214 (288)
T ss_pred HCCCCCHHH-HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 426645789-9999999999997499789996787633327467899889999999999976996899966898589444
Q ss_pred HHHHCCCEEEECCCCHHHHHHHHHCCCEEE--E--ECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHC
Q ss_conf 443004489972542023334552960487--5--335524898999899999889889980001998999999999861
Q gi|254781097|r 255 RYIVEANLLICRSGALTVSEIAVIGRPAIL--V--PYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMK 330 (369)
Q Consensus 255 ~~~~~aDlvIsraG~~Ti~E~~~~g~P~Il--I--P~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~ 330 (369)
.+-...|++|.-+||. ...+|.-.|- | .+| +|-| .|++|.+.|..-.|-+ .+.|.+.|.++|+
T Consensus 215 Sfa~lgDiiiaEp~A~----IgFAG~RVIeqti~~~LP---~~FQ--tae~ll~~G~iD~iv~----R~~lk~~l~~ll~ 281 (288)
T PRK05654 215 SFAMLGDIIIAEPKAL----IGFAGPRVIEQTVREKLP---EGFQ--RAEFLLEHGAIDMIVH----RRELRDTLASLLA 281 (288)
T ss_pred EECCCCCEEEEECCCE----EEECCCHHHHHHCCCCCC---CCHH--HHHHHHHCCCCCEEEC----HHHHHHHHHHHHH
T ss_conf 3024787799805845----873153899985089899---7401--1899997799636645----8999999999999
No 315
>COG4889 Predicted helicase [General function prediction only]
Probab=80.46 E-value=4.3 Score=20.11 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH------HHHHHHCCCCCCCEEE---EECCCCCCCCHHHHHHHHHH
Q ss_conf 99987885256207999999999659839999572------3767624446875168---75256565331233211100
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR------RARSFITDFPADSIYE---IVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 77 (369)
=||+|+|| |..+-++-|.|+|.+ ..+.|..+. +...+.... ...++. .....+.+.+.-.....+..
T Consensus 184 kLIMAcGT-GKTfTsLkisEala~--~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~ 259 (1518)
T COG4889 184 KLIMACGT-GKTFTSLKISEALAA--ARILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPI 259 (1518)
T ss_pred CEEEECCC-CCCCHHHHHHHHHHH--HHEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCCHHCCCC
T ss_conf 58983378-862137889999864--023654351899999999885346-65512578863652344412321204788
Q ss_pred CC----CCCHHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 01----211013555-420344424312653210247888623411
Q gi|254781097|r 78 LW----KAFIASLRL-IKKLKPNVVVGFGGYHSISPLLAGMILRIP 118 (369)
Q Consensus 78 ~~----~~~~~~~~i-i~~~kPDvVi~tGGy~s~P~~iaA~~l~iP 118 (369)
.. .-+.+.+.. =+...--+|+|| |-|+|.+-.|+..|.|
T Consensus 260 p~sT~~~~il~~~~~~~k~~~~~vvFsT--YQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 260 PVSTDLEDILSEMEHRQKANGLTVVFST--YQSLPRIKEAQEAGLD 303 (1518)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHCCCC
T ss_conf 8757499999999875333783899970--2114878999974999
No 316
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=80.44 E-value=3.8 Score=20.51 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=15.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEC
Q ss_conf 1489863043222102333445443232024-6606776202
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQR-KRLVIMQQVR 226 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~-~~~~v~~~~g 226 (369)
..|+|-||+ |-..+-- .++.+.+... ..+.+++.+.
T Consensus 124 ~~vliAgG~-GitP~~s----ml~~l~~~~~~~~v~l~yg~r 160 (243)
T cd06216 124 RLLLIAAGS-GITPVMS----MLRTLLARGPTADVVLLYYAR 160 (243)
T ss_pred CEEEEEECC-CCCHHHH----HHHHHHHCCCCCCEEEEEECC
T ss_conf 789999078-7782899----999999739999999997128
No 317
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=80.42 E-value=4.2 Score=20.21 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=28.4
Q ss_pred CEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 76999878852-56207999999999659839999
Q gi|254781097|r 5 NVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 5 ~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
++|+|++-.+| |-.+-+++|.++|+++|+.|.-.
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 93599548888858999999999998668721665
No 318
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=80.41 E-value=4.1 Score=20.27 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.+++++|.+.|..|.+..
T Consensus 2 ~~l~gK~alITG~s~GI---G~aia~~~a~~Ga~V~i~~ 37 (245)
T PRK12936 2 FDLTGRKALVTGASGGI---GEEIARLLHAQGAIVGLHG 37 (245)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 38899989992747689---9999999998699999982
No 319
>PRK08181 transposase; Validated
Probab=80.36 E-value=4.4 Score=20.09 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=6.6
Q ss_pred CCCEEEEEECC
Q ss_conf 78148986304
Q gi|254781097|r 184 QPFHLLVFGGS 194 (369)
Q Consensus 184 ~~~~ILv~GGS 194 (369)
...+|+++|.+
T Consensus 105 ~~~Nvil~Gp~ 115 (269)
T PRK08181 105 KGANLLLFGPP 115 (269)
T ss_pred CCCEEEEECCC
T ss_conf 48708998999
No 320
>PRK07024 short chain dehydrogenase; Provisional
Probab=80.33 E-value=4.4 Score=20.08 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|. ++|+|+|+.+ |= +.++|++|.++|++|.+++
T Consensus 1 M~--~~VlITGass-GI---G~a~A~~la~~G~~v~l~~ 33 (256)
T PRK07024 1 MP--LKVFITGASS-GI---GQALAREYARQGATLGLVA 33 (256)
T ss_pred CC--CEEEEECCCH-HH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99--9899984602-99---9999999998899899998
No 321
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=80.26 E-value=4.4 Score=20.07 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCCHHHHHCCCEEEE---CCCCHHHH-HHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHH
Q ss_conf 451444300448997---25420233-3455296--04875335524898999899999889889980001998999999
Q gi|254781097|r 251 KDIERYIVEANLLIC---RSGALTVS-EIAVIGR--PAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEE 324 (369)
Q Consensus 251 ~~m~~~~~~aDlvIs---raG~~Ti~-E~~~~g~--P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~ 324 (369)
++...+++.||+.+. |-|.+.++ |-.++.- |-+||=--.+ + -|.. .-.|+++.+.| .++++++
T Consensus 370 ~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFa-G-----aa~~---L~~AliVNP~d--~~~va~a 438 (486)
T COG0380 370 NELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFA-G-----AASE---LRDALIVNPWD--TKEVADA 438 (486)
T ss_pred HHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEECCC-C-----CHHH---HCCCEEECCCC--HHHHHHH
T ss_conf 8999999630344532334542077888998614789728985265-6-----5556---43387678887--6999999
Q ss_pred HHHHHCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998618--999999999998527832799999999999985
Q gi|254781097|r 325 LCSAMKK--PSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAHV 364 (369)
Q Consensus 325 i~~ll~d--~~~l~~m~~~~~~~~~~~aa~~i~~~i~~la~~ 364 (369)
|...|.- +++.++|+...+..-..+++.=+.+.+..+|+.
T Consensus 439 i~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~~ 480 (486)
T COG0380 439 IKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQA 480 (486)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999845999999999999999998613999999999998731
No 322
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=80.24 E-value=0.94 Score=24.76 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=7.5
Q ss_pred CCCEEEEECCCCHHH
Q ss_conf 887699987885256
Q gi|254781097|r 3 ENNVILLVAGGTGGH 17 (369)
Q Consensus 3 ~~~~ili~~gGTGGH 17 (369)
++|+|||.|||.||=
T Consensus 75 NPk~VLvIGGGDGG~ 89 (284)
T TIGR00417 75 NPKKVLVIGGGDGGV 89 (284)
T ss_pred CCCEEEEEECCCCCE
T ss_conf 885478996388846
No 323
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.22 E-value=4.4 Score=20.10 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-+-|+.+.+||++|= +.+++++|.+.|.+|....
T Consensus 7 ~L~gK~alITGas~GI---G~aia~~la~~Ga~Vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGL---GQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 9999989993887689---9999999998799999955
No 324
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.19 E-value=4.4 Score=20.07 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998--876999878852562079999999996598399995
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ .|+++|++|++ |= +++++++|.++|..|.+..
T Consensus 1 M~~~~gKvavITGaas-GI---G~a~A~~la~~Ga~Vvi~d 37 (275)
T PRK05876 1 MDGFPGRGAVITGGAS-GI---GLATGTEFARRGARVVLGD 37 (275)
T ss_pred CCCCCCCEEEEECCCC-HH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9598998799928266-99---9999999998799899997
No 325
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=79.87 E-value=3.7 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=15.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECC
Q ss_conf 148986304322210233344544323202-466067762025
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQ-RKRLVIMQQVRE 227 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~-~~~~~v~~~~g~ 227 (369)
..|+|-||| |-..+--.+ +.+.... ...+.+++....
T Consensus 97 ~~vliAgGt-GIaP~~sml----~~l~~~~~~~~v~l~~g~r~ 134 (216)
T cd06198 97 RQIWIAGGI-GITPFLALL----EALAARGDARPVTLFYCVRD 134 (216)
T ss_pred CEEEEECCC-CCCCHHHHH----HHHHHCCCCCCEEEEEECCC
T ss_conf 889997576-777099999----99997599984899994699
No 326
>PRK07577 short chain dehydrogenase; Provisional
Probab=79.79 E-value=3.7 Score=20.58 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+|+++|++|+ +|= +.++++.|.++|++|....
T Consensus 3 ~K~alITGas-~GI---G~aia~~la~~G~~Vv~~~ 34 (234)
T PRK07577 3 SRTVLVTGAT-KGI---GLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 1989993778-889---9999999998799999963
No 327
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.76 E-value=4.6 Score=19.96 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH-HHHHH
Q ss_conf 998876999878852562079999999996598399995723-76762
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR-ARSFI 47 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~-~~~~~ 47 (369)
|. ++||++..=|.=||-.-..-++..|++.|++|...+... -+.+.
T Consensus 1 ~r-r~~vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v 47 (137)
T PRK02261 1 MK-KPTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 99-887999821886117889999999997897498468879999999
No 328
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.75 E-value=3.7 Score=20.58 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99887699987885--256207999999999659839999
Q gi|254781097|r 1 MSENNVILLVAGGT--GGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 1 M~~~~~ili~~gGT--GGHi~palala~~L~~~g~~v~~~ 38 (369)
|+-+.|+.+.+||+ +|= +.++++.|.++|.+|.+.
T Consensus 1 m~L~gKvalVTGasr~~GI---G~aiA~~la~~Ga~V~~~ 37 (257)
T PRK12748 1 LPLMKKIAIVTGASRLNGI---GAAICRVLAQKGIDIFFT 37 (257)
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCCEEEEE
T ss_conf 9999988999288999854---999999999879999997
No 329
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.55 E-value=4.5 Score=20.03 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9988--76999878852562079999999996598399995
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+.+ -|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~grL~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~~ 38 (254)
T PRK06463 1 MSGKFKGKVALITGGSRGI---GRAIAEKFLKEGAKVAILY 38 (254)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 9975698989994847789---9999999998899999964
No 330
>PRK05802 hypothetical protein; Provisional
Probab=79.51 E-value=4.7 Score=19.91 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 73253044432456543334433114478148986304322210233344544323202466067762025516776532
Q gi|254781097|r 157 KIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQ 236 (369)
Q Consensus 157 k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~ 236 (369)
++.+-| |-...++..+.....+ +. +.||.....|-.. .+ -+++.|... ...+.++.-.++-......+.
T Consensus 151 ~i~iRG-PywNGifGlk~I~~~k----n~-k~LvIaRGIgqAP---~v-pVikkL~~n-~NkV~vIid~~~~~~~fI~ey 219 (328)
T PRK05802 151 EILIRG-PYWNGVFGLKNIKSTK----NG-KSLVIARGIGQAP---AV-PVIKKLYSN-GNKVIVILDKGPFENNFIKEY 219 (328)
T ss_pred EEEEEC-CCCCCCCCHHHHHHCC----CC-EEEEEECCCCCCC---CH-HHHHHHHHC-CCEEEEEECCCCCCCHHHHHH
T ss_conf 699967-7424403705675057----97-3999935623255---55-999999868-997999985885531659999
Q ss_pred HHH
Q ss_conf 210
Q gi|254781097|r 237 YDE 239 (369)
Q Consensus 237 ~~~ 239 (369)
+..
T Consensus 220 l~~ 222 (328)
T PRK05802 220 LEE 222 (328)
T ss_pred HHH
T ss_conf 985
No 331
>PRK08945 short chain dehydrogenase; Provisional
Probab=79.45 E-value=4.2 Score=20.19 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8876999878852562079999999996598399995
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+.|+++|+|| ++|= +.+++++|.++|..|.+..
T Consensus 12 ~gK~~lITGa-s~GI---G~aiA~~la~~Ga~Vil~~ 44 (245)
T PRK08945 12 KDRIILVTGA-GDGI---GREAALTYARHGATVILLG 44 (245)
T ss_pred CCCEEEEECC-CHHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9798999488-6189---9999999998799899996
No 332
>PRK08589 short chain dehydrogenase; Validated
Probab=79.40 E-value=4.3 Score=20.12 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ +-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~rL~gKvalVTGas~GI---G~aiA~~la~~Ga~Vv~~d 37 (272)
T PRK08589 1 MKRLENKVAVITGASTGI---GQASAIALAQEGAYVLAVD 37 (272)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 999997989997825699---9999999998699999983
No 333
>PRK06753 hypothetical protein; Provisional
Probab=79.35 E-value=3.2 Score=21.00 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=24.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 699987885256207999999999659839999
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
||+|+|||-+| +++|-.|.++|++|.++
T Consensus 2 kV~IVGaGiaG-----L~~A~~L~~~G~~v~V~ 29 (373)
T PRK06753 2 KIAIIGAGIGG-----LTAAALLQEQGHTVKVF 29 (373)
T ss_pred EEEEECCCHHH-----HHHHHHHHHCCCCEEEE
T ss_conf 89999945899-----99999999779999998
No 334
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=79.26 E-value=4.7 Score=19.86 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 489863043222102333445443232024660677620
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQV 225 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~ 225 (369)
.|||-||+ |-..+-..+..++. ......+.+++..
T Consensus 111 lvliAgG~-GitP~~sml~~~l~---~~~~~~v~l~~g~ 145 (241)
T cd06214 111 YVLFAAGS-GITPVLSILKTALA---REPASRVTLVYGN 145 (241)
T ss_pred EEEEECCC-CCCHHHHHHHHHHH---CCCCCCEEEEEEC
T ss_conf 99995687-51849999999997---4999838999807
No 335
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.25 E-value=4.7 Score=19.85 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH-----------HHCCCCCCCCCCC--CCCHHHHHCCCEEEECC
Q ss_conf 2333445443232024660677620255167765322-----------1001111345444--45144430044899725
Q gi|254781097|r 201 SDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQY-----------DELGCKATLACFF--KDIERYIVEANLLICRS 267 (369)
Q Consensus 201 n~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~-----------~~~~~~~~v~~f~--~~m~~~~~~aDlvIsra 267 (369)
|..++..+..+.+...+-+.++ .+..-...+.+.. ...+.++.+.+|+ ++..+++-.||+-.-|+
T Consensus 188 npa~~s~ieq~r~a~~p~llL~--~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRG 265 (370)
T COG4394 188 NPALPSWIEQLRKADKPILLLI--PEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRG 265 (370)
T ss_pred CCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEC
T ss_conf 8526899999996599779982--45147999999747886232330001543799825776767999998533034535
Q ss_pred CCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCH---------HHHHHH
Q ss_conf 42023334552960487533552489899989999988988998000199899999999986189---------999999
Q gi|254781097|r 268 GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKP---------SCLVQM 338 (369)
Q Consensus 268 G~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~---------~~l~~m 338 (369)
--+-+ -+..+|+|.+--=||..-+.|=-+ -+.|-++-|+.+ +++ +.+.+...-..+-.++ ..+..+
T Consensus 266 EDSFV-RAq~agkPflWHIYpQdentHl~K-LeaFldky~~~l-p~~--~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~ 340 (370)
T COG4394 266 EDSFV-RAQLAGKPFLWHIYPQDENTHLAK-LEAFLDKYCPFL-PPN--TAKALRTFWIAWNAGRLSDDWSYFFKNLKEW 340 (370)
T ss_pred CHHHH-HHHHCCCCCEEEECCCCCCCHHHH-HHHHHHHHCCCC-CHH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 24899-999728970798457765207999-999999858888-877--8999999999824786433079999864798
Q ss_pred HHHHHH-----CCCCHHHHHHHHHHHHH
Q ss_conf 999985-----27832799999999999
Q gi|254781097|r 339 AKQVSM-----KGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 339 ~~~~~~-----~~~~~aa~~i~~~i~~l 361 (369)
++.+++ +..|+.+++++..+++.
T Consensus 341 r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 341 REHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9889999988712841999999999973
No 336
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=79.10 E-value=4.5 Score=20.01 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=7.8
Q ss_pred CCEEEEECCCC
Q ss_conf 87699987885
Q gi|254781097|r 4 NNVILLVAGGT 14 (369)
Q Consensus 4 ~~~ili~~gGT 14 (369)
+.||.+.|||+
T Consensus 3 ~~KI~iIGgGS 13 (442)
T COG1486 3 KFKIVIIGGGS 13 (442)
T ss_pred CCEEEEECCCC
T ss_conf 73699989975
No 337
>pfam00982 Glyco_transf_20 Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex,.
Probab=78.99 E-value=4.8 Score=19.80 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCHHHHHCCCEEEE---CCCCHHHH-HHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEHHCCCHHHHHH
Q ss_conf 451444300448997---25420233-345529--604875335524898999899999889-88998000199899999
Q gi|254781097|r 251 KDIERYIVEANLLIC---RSGALTVS-EIAVIG--RPAILVPYPHSVDQDQLHNAYYLQEGG-GAKVITENFLSPERLAE 323 (369)
Q Consensus 251 ~~m~~~~~~aDlvIs---raG~~Ti~-E~~~~g--~P~IlIP~p~a~~~hQ~~NA~~l~~~G-~a~~i~~~~~~~~~l~~ 323 (369)
+++..+|+.||+++- |-|-+.++ |-.++. .|-+||=-.+ |-.-...+ +|+++...| .+.+++
T Consensus 360 ~el~aly~~adv~lVTplrDGMNLvakEyva~q~~~~GvLILSef---------aGaa~~L~~gAllVNP~d--~~~~a~ 428 (470)
T pfam00982 360 DELIALYAIADVCLVTSLRDGMNLVAYEYVACQQDRKGVLILSEF---------AGAAQSLNDGAILVNPWD--IEEVAE 428 (470)
T ss_pred HHHHHHHHHHHEEEECCCCCCCCCCCHHHEEEECCCCCEEEEECC---------CCHHHHHCCCCEEECCCC--HHHHHH
T ss_conf 999999985123574533343353302213665599954999524---------031767559708989999--899999
Q ss_pred HHHHHHCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99998618--999999999998527832799999999999
Q gi|254781097|r 324 ELCSAMKK--PSCLVQMAKQVSMKGKPQAVLMLSDLVEKL 361 (369)
Q Consensus 324 ~i~~ll~d--~~~l~~m~~~~~~~~~~~aa~~i~~~i~~l 361 (369)
+|...+.- .++..+|.+-.+.+...+...=..+.+..|
T Consensus 429 ai~~AL~M~~~Er~~R~~~l~~~v~~~d~~~W~~~fL~~L 468 (470)
T pfam00982 429 AINEALTMSEEERQKRHRKLFKYISKHDVQYWAESFLSDL 468 (470)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999975999999999999999988579999999999984
No 338
>KOG1250 consensus
Probab=78.97 E-value=4.8 Score=19.79 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=90.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 34442431265321024788862341101221532001567788999998741343222235566732530444324565
Q gi|254781097|r 92 LKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIK 171 (369)
Q Consensus 92 ~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~~~~~~~~~~~k~~~~G~PvR~~~~~ 171 (369)
.++-+|-+-+|-++..+.++|+.|+||.-|- .|..+-.+-...+ + -....+++.|.-..+....
T Consensus 113 ~~~gViasSaGNha~a~Ayaa~~LgipaTIV----mP~~tp~~kiq~~-----------~-nlGA~Vil~G~~~deAk~~ 176 (457)
T KOG1250 113 KKAGVIASSAGNHAQAAAYAARKLGIPATIV----MPVATPLMKIQRC-----------R-NLGATVILSGEDWDEAKAF 176 (457)
T ss_pred HCCCEEEECCCCHHHHHHHHHHHCCCCEEEE----ECCCCHHHHHHHH-----------H-CCCCEEEEECCCHHHHHHH
T ss_conf 1674697057528999998887619966999----2278739999998-----------6-1498799956437899999
Q ss_pred HHHHHHHH-HCCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 43334433-1144781-489863043222102333445443232024660677620255167765322100111134544
Q gi|254781097|r 172 MKDIPYQS-SDLDQPF-HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACF 249 (369)
Q Consensus 172 ~~~~~~~~-~~~~~~~-~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f 249 (369)
........ ...-.|+ +-+|+-| ||+ ...+.+.++.+. ..-.++-++|......+.........++.+.+-
T Consensus 177 a~~lAke~gl~yI~pfDhP~I~aG-qgT-----ig~EIl~ql~~~--~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGV 248 (457)
T KOG1250 177 AKRLAKENGLTYIPPFDHPDIWAG-QGT-----IGLEILEQLKEP--DGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGV 248 (457)
T ss_pred HHHHHHHCCCEECCCCCCCHHHCC-CCH-----HHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999888649654489998003237-555-----999999860578--874999607721689999999973888736887
Q ss_pred CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEEC-CCCCCCHH----HHHHHHHHHCC--CEEEEEHHCCCHHHHH
Q ss_conf 44514443004489972542023334552960487533-55248989----99899999889--8899800019989999
Q gi|254781097|r 250 FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPY-PHSVDQDQ----LHNAYYLQEGG--GAKVITENFLSPERLA 322 (369)
Q Consensus 250 ~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~-p~a~~~hQ----~~NA~~l~~~G--~a~~i~~~~~~~~~l~ 322 (369)
. | .|+-+...++..|.|..+ |- +.-+|+-- -.|+-.+.+.- --++++ .+++.
T Consensus 249 E--------------t-~~a~~f~~sl~~g~~V~l-p~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~-----~~ei~ 307 (457)
T KOG1250 249 E--------------T-EGAHSFNASLKAGKPVTL-PKITSLADGLAVKTVGENTFELAQKLVDRVVVVE-----DDEIA 307 (457)
T ss_pred E--------------E-CCCHHHHHHHHCCCEEEC-CCCCCHHCCCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHH
T ss_conf 4--------------0-672788998746985544-6403210123333132899999874486389966-----18899
Q ss_pred HHHHHHHCCHHH
Q ss_conf 999998618999
Q gi|254781097|r 323 EELCSAMKKPSC 334 (369)
Q Consensus 323 ~~i~~ll~d~~~ 334 (369)
.+|++++.|+..
T Consensus 308 aaI~~l~edek~ 319 (457)
T KOG1250 308 AAILRLFEDEKM 319 (457)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999875200
No 339
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.95 E-value=4.8 Score=19.79 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998-8769998788525620799999999965983999957
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++ +-|+.+.+||+.|= +.++++.|.+.|.+|.+...
T Consensus 1 M~~L~gKvalVTGas~GI---G~aiA~~la~~Ga~Vvi~~~ 38 (248)
T PRK07806 1 MDDLPGKIALVTGSSRGI---GAEVAKYLAGAGAHVVVNYR 38 (248)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 989899889993788599---99999999987998999838
No 340
>PRK08628 short chain dehydrogenase; Provisional
Probab=78.93 E-value=4.8 Score=19.79 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8769998788525620799999999965983999957
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+.|+++.+||++|= +.++++.|.+.|..|.+...
T Consensus 6 ~gKvalVTG~s~GI---G~a~a~~la~~Ga~v~i~~~ 39 (258)
T PRK08628 6 KDKVVIVTGGASGI---GAAISLRLAEEGAIPVVFGR 39 (258)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 99989992777789---99999999987998999808
No 341
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=78.77 E-value=4.9 Score=19.76 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=14.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEE
Q ss_conf 1489863043222102333445443232024-660677620
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQR-KRLVIMQQV 225 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~-~~~~v~~~~ 225 (369)
..+||-||+ |-..+-- .++.+..... ..+.+++..
T Consensus 110 ~~~liAgG~-GItP~~s----~l~~l~~~~~~~~~~l~~g~ 145 (236)
T cd06210 110 PRWFVAGGT-GLAPLLS----MLRRMAEWGEPQEARLFFGV 145 (236)
T ss_pred CEEEEECCC-CCCHHHH----HHHHHHHCCCCCEEEEEEEC
T ss_conf 689994686-5207999----99999972999728999742
No 342
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.73 E-value=4.9 Score=19.76 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 88769998788525620799999999965983999957
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+.|.++|+ ||++|= +.+++++|.+.|.+|.+...
T Consensus 3 ~gKvalVT-Gas~GI---G~aia~~la~~Ga~Vvi~~~ 36 (250)
T PRK08063 3 SGKVALVT-GSSRGI---GKAIALRLAKEGYDIAINYA 36 (250)
T ss_pred CCCEEEEE-CCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 94989995-876699---99999999988998999759
No 343
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=78.62 E-value=4.9 Score=19.72 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=47.3
Q ss_pred EEEEECCCCHHHHHHHH-HH---HHHHHHCCCEEEEEECHHH---HHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 69998788525620799-99---9999965983999957237---6762444-687516875256565331233211100
Q gi|254781097|r 6 VILLVAGGTGGHVFPAV-AL---SHELKNRGYAVYLITDRRA---RSFITDF-PADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 6 ~ili~~gGTGGHi~pal-al---a~~L~~~g~~v~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
+|||+=-- |--.|++ +| +.++...+|+|+++.+.+- ....... ......++ ..+....-.-.
T Consensus 2 rILiTNDD--Gi~a~Gi~aL~~~~~~~~~~~~~V~VvAP~~~~Sg~s~ait~~~pl~~~~~---~~~~y~v~GTP----- 71 (261)
T PRK13931 2 RILITNDD--GINAPGLEVLEQIATELAGPGGEVWTVAPAFEQSGVGHCISYTHPMMIAEL---GPRRFAAEGSP----- 71 (261)
T ss_pred EEEEEECC--CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCCEEEEC---CCCEEECCCCH-----
T ss_conf 69998179--999817999999999873289859998059997445427578998567761---78736547882-----
Q ss_pred CCCCCHHH-HHHHHHCCCCEEEE-------CCCCC--C--HHHHHHHHHCCCCCEEE
Q ss_conf 01211013-55542034442431-------26532--1--02478886234110122
Q gi|254781097|r 78 LWKAFIAS-LRLIKKLKPNVVVG-------FGGYH--S--ISPLLAGMILRIPSMVH 122 (369)
Q Consensus 78 ~~~~~~~~-~~ii~~~kPDvVi~-------tGGy~--s--~P~~iaA~~l~iP~vih 122 (369)
.-.+.-. ..++++.+||+||| .|-.+ | +.+.+-|.+++||.+-.
T Consensus 72 -aDCV~lal~~l~~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~Eg~~~gipsIAv 127 (261)
T PRK13931 72 -ADCVLAALHDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIAL 127 (261)
T ss_pred -HHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEE
T ss_conf -89999998643348998889967658876545143318889999999839995788
No 344
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=78.58 E-value=3.3 Score=20.92 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=21.2
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998788525620799999999965983999957
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
++.+|+| |++ +.++.++|.++||+|..++-
T Consensus 1 IlV~Gat-G~i--G~~vv~~L~~~g~~Vr~l~R 30 (232)
T pfam05368 1 ILVFGAT-GYQ--GGSVVRASLKAGHPVRALVR 30 (232)
T ss_pred EEEECCC-HHH--HHHHHHHHHHCCCCEEEEEC
T ss_conf 0998968-289--99999999858993899971
No 345
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.48 E-value=4.7 Score=19.90 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|=+.|+++|++| ++|= +.+++++|.++|.+|.+..
T Consensus 1 ~L~gK~alITGa-s~GI---G~aia~~la~~Ga~V~~~~ 35 (258)
T PRK12429 1 MLKGKTALVTGA-ASGI---GLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCCEEEEECC-CCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989598999488-7589---9999999998799999997
No 346
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=78.27 E-value=4.4 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=6.5
Q ss_pred EEEEEECCCCCCCH
Q ss_conf 48986304322210
Q gi|254781097|r 187 HLLVFGGSQGAKVF 200 (369)
Q Consensus 187 ~ILv~GGS~Ga~~l 200 (369)
.|+|-||+ |=..+
T Consensus 101 ~vlIAgG~-GItP~ 113 (224)
T cd06189 101 LILIAGGT-GFAPI 113 (224)
T ss_pred EEEEECCC-CCCHH
T ss_conf 89993687-75539
No 347
>PRK09242 tropinone reductase; Provisional
Probab=78.11 E-value=5.1 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=23.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|++ |++|= +.++++.|.+.|.+|.+..
T Consensus 11 K~alITG-gs~GI---G~a~a~~la~~Ga~V~~~~ 41 (258)
T PRK09242 11 QTALITG-ASKGI---GLAIARELLGLGADVLIVA 41 (258)
T ss_pred CEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9999948-48689---9999999998799899996
No 348
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.11 E-value=5.1 Score=19.62 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 13 ~gK~alITGgs~GI---G~~ia~~la~~Ga~V~i~~ 45 (259)
T PRK06124 13 AGQVALVTGSARGL---GLEIARALAEAGAHVLVNG 45 (259)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989992867489---9999999998799999996
No 349
>PRK08051 fre FMN reductase; Validated
Probab=78.04 E-value=5.1 Score=19.61 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=16.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 489863043222102333445443232024660677620255
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRED 228 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~ 228 (369)
.+||-||+ |-..+--++...+. ......+.++++....
T Consensus 105 ~vlIAgGt-GiaPi~Sml~~~~~---~~~~~~i~L~~g~r~~ 142 (232)
T PRK08051 105 LLLIAGGT-GFSYARSILLTALA---RGPKRPITLYWGGREE 142 (232)
T ss_pred EEEEECCC-CCCHHHHHHHHHHH---HCCCCCEEEEEECCCH
T ss_conf 89997173-66578999999998---5999748999955998
No 350
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=78.04 E-value=4.9 Score=19.75 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=6.3
Q ss_pred EEEEEECCCCCCCH
Q ss_conf 48986304322210
Q gi|254781097|r 187 HLLVFGGSQGAKVF 200 (369)
Q Consensus 187 ~ILv~GGS~Ga~~l 200 (369)
.++|-||+ |-..+
T Consensus 100 ~vliAgG~-GItP~ 112 (232)
T cd06190 100 IVCIAGGS-GLAPM 112 (232)
T ss_pred EEEEECCC-CCCHH
T ss_conf 89998476-73359
No 351
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=78.00 E-value=4.2 Score=20.19 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 6999878--85256207999999999659839999572
Q gi|254781097|r 6 VILLVAG--GTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 6 ~ili~~g--GTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
||++.+| |. |-.+-|.|+|-.|.++|+.|.+++..
T Consensus 1 r~i~~~GKGGV-GKTT~AaalA~~lA~~G~kVLlvstD 37 (254)
T cd00550 1 RYIFFGGKGGV-GKTTISAATAVRLAEQGKKVLLVSTD 37 (254)
T ss_pred CEEEEECCCCC-CHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98999689855-48999999999999689949999589
No 352
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.98 E-value=5.2 Score=19.60 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 10 ~GKvalVTGgs~GI---G~aiA~~la~~Ga~V~i~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGI---GRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99979994737689---9999999998799899997
No 353
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=77.95 E-value=5.2 Score=19.59 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 988769998788525620799999999965983999957
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
.++++++|+|. |+|= +.++|+.|.++|+++..+.-
T Consensus 4 ~~~~~~lITGA-SsGI---G~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 4 MKGKTALITGA-SSGI---GAELAKQLARRGYNLILVAR 38 (265)
T ss_pred CCCCEEEEECC-CCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 77867999778-8648---99999999977997999967
No 354
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=77.90 E-value=5 Score=19.67 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=14.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 4898630432221023334454432320-246606776202
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVR 226 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g 226 (369)
.++|-||+ |-..+-.. ++.+... ....+.+++.+.
T Consensus 101 ~vliAgG~-GItP~~s~----l~~~~~~~~~~~v~l~~g~r 136 (224)
T cd06187 101 VLCIAGGT-GLAPLRAI----VEDALRRGEPRPVHLFFGAR 136 (224)
T ss_pred EEEEECCC-CCCHHHHH----HHHHHHCCCCCEEEEEEECC
T ss_conf 89996575-62359999----99999759998289997158
No 355
>PRK08116 hypothetical protein; Validated
Probab=77.89 E-value=5.2 Score=19.58 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=30.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEE
Q ss_conf 898630432221023334454432320246606776202551677653221001111345444451444300448997
Q gi|254781097|r 188 LLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLIC 265 (369)
Q Consensus 188 ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIs 265 (369)
+|..| +-|.+. ......++..+.+ ....|+...-....+.++..+....... .+++-+.+..+||+|=
T Consensus 111 Lll~G-~~GtGK-ThLa~aIa~~l~~---~g~~V~~~~~~~ll~~lk~~~~~~~~~~-----~~e~l~~l~~~dLLIi 178 (262)
T PRK08116 111 LLLWG-SPGNGK-TYLAAAIANELIE---KGVPVVFVNVPELLNRIKSTYNSEGKED-----ENEIIRALDNADLLIL 178 (262)
T ss_pred EEEEC-CCCCCH-HHHHHHHHHHHHH---CCCEEEEEEHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHCCCEEEE
T ss_conf 89989-899989-9999999999998---7993999889999999999986356101-----9999998612998998
No 356
>PRK05693 short chain dehydrogenase; Provisional
Probab=77.78 E-value=4.9 Score=19.78 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=24.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 7699987885256207999999999659839999572376
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
|.++|+|+++ |= +.+++++|.++|+.|... .+..+
T Consensus 2 KvvlITGass-GI---G~alA~~la~~G~~V~~~-~R~~~ 36 (274)
T PRK05693 2 PVVLITGCSS-GI---GRALADAFKAAGYEVWAT-ARKAE 36 (274)
T ss_pred CEEEECCCCC-HH---HHHHHHHHHHCCCEEEEE-ECCHH
T ss_conf 9899948885-89---999999999879999999-79999
No 357
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.66 E-value=5.3 Score=19.54 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 998--87699987885256207999999999659839999572
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
||+ .|+|+|.|-|-. +++.++.|.++|.+|....++
T Consensus 1 ~~d~~~k~v~V~GlG~s-----G~s~~~~L~~~G~~v~~~D~~ 38 (438)
T PRK03806 1 MADYQGKNVVIIGLGLT-----GLSCVDFFLARGVTPRVMDTR 38 (438)
T ss_pred CCCCCCCEEEEEEECHH-----HHHHHHHHHHCCCEEEEEECC
T ss_conf 97778998999945788-----899999999789969999899
No 358
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=77.64 E-value=4.7 Score=19.90 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECC
Q ss_conf 48986304322210233344544323202-466067762025
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQ-RKRLVIMQQVRE 227 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~-~~~~~v~~~~g~ 227 (369)
.+||-||| |-..+-. .++.+.... ...+.+++.+..
T Consensus 104 ivlIAgGt-GItP~~s----ml~~l~~~~~~~~v~l~~g~r~ 140 (241)
T cd06195 104 LWLLATGT-GIAPFLS----MLRDLEIWERFDKIVLVHGVRY 140 (241)
T ss_pred EEEEEECC-CCCHHHH----HHHHHHHCCCCCCEEEEEECCC
T ss_conf 89999151-2455999----9999997099984799997589
No 359
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.61 E-value=5.3 Score=19.53 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 4 ~L~gKvalVTGas~GI---G~aiA~~la~~Ga~V~i~~ 38 (253)
T PRK06172 4 TFSGQVALVTGGAAGI---GRATAIAFAREGAKVVVAD 38 (253)
T ss_pred CCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 8699989993757689---9999999998799899997
No 360
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.61 E-value=5.3 Score=19.53 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 2 m~L~gKvalVTGas~GI---G~aiA~~la~~Ga~Vvi~~ 37 (254)
T PRK07478 2 MLLNGKVAIITGASSGI---GRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 88899879995887689---9999999998799999997
No 361
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.61 E-value=5.3 Score=19.53 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 14 ~gKvalVTGas~GI---G~aiA~~la~~Ga~Vvi~~ 46 (258)
T PRK06935 14 KGKVAIVTGGNTGL---GQGYAVALAKAGADIIITT 46 (258)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 99989994857589---9999999998799999972
No 362
>KOG1198 consensus
Probab=77.58 E-value=5.3 Score=19.52 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH----
Q ss_conf 4781489863043222102333445443232024660677620255167765322100111134544445144430----
Q gi|254781097|r 183 DQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIV---- 258 (369)
Q Consensus 183 ~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~---- 258 (369)
.....|||+|||-| +... +-++..... -..|+..|+....+..++.=.+.-.+++- +|..+.+.
T Consensus 156 ~~g~~vLv~ggsgg---VG~~----aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~vvdy~~----~~~~e~~kk~~~ 223 (347)
T KOG1198 156 SKGKSVLVLGGSGG---VGTA----AIQLAKHAG-AIKVVTACSKEKLELVKKLGADEVVDYKD----ENVVELIKKYTG 223 (347)
T ss_pred CCCCEEEEEECCCH---HHHH----HHHHHHHCC-CCEEEEEECCCCHHHHHHCCCCCCCCCCC----HHHHHHHHHHCC
T ss_conf 89986999938748---9999----999998749-74799981554168999729965124885----779999876227
Q ss_pred -CCCEEEECCCCHHHHHHH
Q ss_conf -044899725420233345
Q gi|254781097|r 259 -EANLLICRSGALTVSEIA 276 (369)
Q Consensus 259 -~aDlvIsraG~~Ti~E~~ 276 (369)
.-|+|+--.|+.+.....
T Consensus 224 ~~~DvVlD~vg~~~~~~~~ 242 (347)
T KOG1198 224 KGVDVVLDCVGGSTLTKSL 242 (347)
T ss_pred CCCEEEEECCCCCCCHHHH
T ss_conf 8850999888897324323
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.41 E-value=5.3 Score=19.49 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 7 ~gK~alITG~s~GI---G~a~a~~la~~Ga~Vvi~~ 39 (265)
T PRK07062 7 EGRVAVVTGGSSGI---GLATVELLLEAGASVAICG 39 (265)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989995757799---9999999998799999997
No 364
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.37 E-value=5.4 Score=19.48 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=23.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+.|+.+.+||++|= +.++++.|.+.|.+|.+..
T Consensus 9 ~gKvalITGgs~GI---G~aia~~la~~Ga~V~i~~ 41 (263)
T PRK07814 9 DGQVAVVTGAGRGL---GAAIALAFAEAGADVLIAA 41 (263)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989995896689---9999999998799899996
No 365
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=77.27 E-value=4.9 Score=19.72 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 998876999878852-56207999999999659839999
Q gi|254781097|r 1 MSENNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 1 M~~~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
|. ++++|+|-+|+ |-.+-+.+|.++|+++|..|...
T Consensus 1 Mm--k~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~ 37 (231)
T PRK12374 1 ML--KRFFITGTDTSVGKTVVSRALLQALASQGKSVAGY 37 (231)
T ss_pred CC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99--64799878999539999999999999789948888
No 366
>KOG1429 consensus
Probab=77.21 E-value=5.3 Score=19.49 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98876999878852562079999999996598399995
Q gi|254781097|r 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 2 ~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+.+++|+|++|| |-+ +--|++.|..+||+|..+.
T Consensus 25 ~~~lrI~itGga--GFI--gSHLvdkLm~egh~Via~D 58 (350)
T KOG1429 25 SQNLRILITGGA--GFI--GSHLVDKLMTEGHEVIALD 58 (350)
T ss_pred CCCEEEEEECCC--CHH--HHHHHHHHHHCCCEEEEEE
T ss_conf 887079996574--058--8999999974687799983
No 367
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=77.14 E-value=4.4 Score=20.07 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 66732530444324565433344331144781489863043222102333445443232024660677620
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQV 225 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~ 225 (369)
.+.+.+.| |.-..|.... ......|||-||+ |-..+-..+..++. ......+.+++..
T Consensus 77 Gd~v~v~g-P~G~~f~~~~--------~~~~~ivlIAgG~-GitP~~s~l~~~~~---~~~~~~i~l~~g~ 134 (222)
T cd06194 77 GHALRLQG-PFGQAFYRPE--------YGEGPLLLVGAGT-GLAPLWGIARAALR---QGHQGEIRLVHGA 134 (222)
T ss_pred CCEEEEEC-CCCCCEECCC--------CCCCCEEEEECCC-CCCCHHHHHHHHHH---HCCCCEEEEEEEE
T ss_conf 99999981-7898314577--------7887389997476-75509999999998---3999759999983
No 368
>PRK08226 short chain dehydrogenase; Provisional
Probab=76.99 E-value=5.5 Score=19.41 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=24.3
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998-876999878852562079999999996598399995
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.+ +-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 M~~L~gKvalVTGas~GI---G~aiA~~la~~Ga~Vvi~d 37 (263)
T PRK08226 1 MGKLTGKTALITGALQGI---GEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 999899889994737799---9999999998799899996
No 369
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=76.90 E-value=5.1 Score=19.60 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.9
Q ss_pred CCCCCEEEECCC
Q ss_conf 566732530444
Q gi|254781097|r 154 LLRKIIVTGNPI 165 (369)
Q Consensus 154 ~~~k~~~~G~Pv 165 (369)
+.+++.+.| |.
T Consensus 77 ~G~~v~v~g-P~ 87 (223)
T cd00322 77 PGDEVEVSG-PG 87 (223)
T ss_pred CCCEEEEEE-CC
T ss_conf 999999993-77
No 370
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=76.79 E-value=5.5 Score=19.38 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=37.0
Q ss_pred CEEEEECCCC-HH-HHHHHHHHHHHHHHC---CCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf 7699987885-25-620799999999965---983999957237676244468751687525656533123321110001
Q gi|254781097|r 5 NVILLVAGGT-GG-HVFPAVALSHELKNR---GYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILW 79 (369)
Q Consensus 5 ~~ili~~gGT-GG-Hi~palala~~L~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (369)
+|||++|=+- || .++|+..++++|..+ |.+|.- ..+ ++.+ .
T Consensus 2 ~kILiTGFePFgg~~~NPS~~~~~~L~~~~i~g~~v~~------------------~~L---Pv~f-------------~ 47 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVIS------------------RIV---PNTF-------------F 47 (222)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE------------------EEE---CCCH-------------H
T ss_conf 87999605789979878469999865466668967999------------------993---8447-------------7
Q ss_pred CCCHHHHHHHHHCCCCEEEECC
Q ss_conf 2110135554203444243126
Q gi|254781097|r 80 KAFIASLRLIKKLKPNVVVGFG 101 (369)
Q Consensus 80 ~~~~~~~~ii~~~kPDvVi~tG 101 (369)
++.-.....+.+++||+||++|
T Consensus 48 ~s~~~l~~~i~~~~Pd~Vi~~G 69 (222)
T PRK13195 48 ESIAAAQQAIAEIEPALVIMLG 69 (222)
T ss_pred HHHHHHHHHHHHHCCCEEEECC
T ss_conf 6899999999987999999923
No 371
>PRK05713 hypothetical protein; Provisional
Probab=76.79 E-value=5.5 Score=19.37 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=17.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 81489863043222102333445443232024660677620255
Q gi|254781097|r 185 PFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRED 228 (369)
Q Consensus 185 ~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~ 228 (369)
...|+|-||| |-..+--++..++. ......+.++++....
T Consensus 193 rplvliAgGT-GiAPi~Sml~~~l~---~~~~~~v~l~~g~R~~ 232 (312)
T PRK05713 193 RPLWLLAAGT-GLAPLWGILREALR---QGHQGPIRLLHLARDS 232 (312)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHH---CCCCCCEEEEEEECCH
T ss_conf 8779997376-53678999999997---0999988999996887
No 372
>PRK09186 flagellin modification protein A; Provisional
Probab=76.63 E-value=5.5 Score=19.43 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|=+.|+++|++| ++|= +.++++.|.+.|.+|.+..
T Consensus 1 lL~gK~~lVTGg-s~GI---G~aia~~la~~Ga~V~~~~ 35 (255)
T PRK09186 1 MLEGKTILITGA-GGLI---GSALVKAILEAGGIVIAAD 35 (255)
T ss_pred CCCCCEEEEECC-CCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989598999795-8689---9999999998799999996
No 373
>KOG4180 consensus
Probab=76.56 E-value=1.4 Score=23.64 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=8.2
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 4243126532102478886
Q gi|254781097|r 95 NVVVGFGGYHSISPLLAGM 113 (369)
Q Consensus 95 DvVi~tGGy~s~P~~iaA~ 113 (369)
|+||+.||=-+| ++||.
T Consensus 107 D~VisvGGDGTf--L~Aas 123 (395)
T KOG4180 107 DMVISVGGDGTF--LLAAS 123 (395)
T ss_pred HEEEEECCCCCE--EEHHH
T ss_conf 179971686313--21001
No 374
>PRK06841 short chain dehydrogenase; Provisional
Probab=76.48 E-value=5.6 Score=19.32 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=22.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|+ ||++|= +.++++.|.+.|..|.+..
T Consensus 16 KvalVT-Gas~GI---G~aiA~~la~~Ga~V~i~d 46 (255)
T PRK06841 16 KVAVVT-GGASGI---GHAIAELFAAKGARVALLD 46 (255)
T ss_pred CEEEEE-CCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 999997-967789---9999999998799999996
No 375
>PRK09730 hypothetical protein; Provisional
Probab=76.47 E-value=5.6 Score=19.33 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=24.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
||.+.+||++|= +.++++.|.+.|..|.+...
T Consensus 2 KValITGas~GI---G~aia~~la~~Ga~V~i~~~ 33 (247)
T PRK09730 2 AIALVTGGSRGI---GRATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHCCCEEEEECC
T ss_conf 799990622699---99999999987999999669
No 376
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=76.35 E-value=5.6 Score=19.36 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=16.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 998876999878852562079999999996598399
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVY 36 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~ 36 (369)
|+. +|-|.-.|.-=.+.+.-.|-+++.+.|..+-
T Consensus 1 m~~--~v~i~p~g~~~~~~~~etlL~aa~~~gi~~p 34 (337)
T PRK07609 1 MSF--QVTLQPSGRQFTVEPDETILDAALRQGIHLP 34 (337)
T ss_pred CCE--EEEEECCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 935--9999549839997999969999998699874
No 377
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=76.31 E-value=4.8 Score=19.82 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=14.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEE
Q ss_conf 148986304322210233344544323202-4660677620
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQ-RKRLVIMQQV 225 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~-~~~~~v~~~~ 225 (369)
..|+|-||+ |-..+-.. ++.+.... ...+.+++..
T Consensus 102 ~ivliAgG~-GItP~~s~----l~~~~~~~~~~~v~l~~g~ 137 (227)
T cd06213 102 PILCIAGGS-GLAPILAI----LEQARAAGTKRDVTLLFGA 137 (227)
T ss_pred CEEEEECCC-CCCHHHHH----HHHHHHCCCCCCCEEEECC
T ss_conf 589997684-64409999----9999973998774787515
No 378
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=76.27 E-value=5.7 Score=19.28 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 2 ~~L~gKvalVTG~s~GI---G~aiA~~la~~Ga~V~i~~ 37 (247)
T PRK12935 2 VQLNGKVAIVTGGAKGI---GKAITVALAQEGAKVVINY 37 (247)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEC
T ss_conf 98896989991727689---9999999998799899976
No 379
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.25 E-value=5.7 Score=19.28 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 9 ~gKvalVTGas~GI---G~aia~~la~~Ga~V~i~~ 41 (278)
T PRK08277 9 KGKVAVITGGGGVL---GGAMAKELARAGAKVAILD 41 (278)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989995867489---9999999998799899997
No 380
>PRK06227 consensus
Probab=76.19 E-value=5.7 Score=19.26 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 998876999878852562079999999996598399995
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.-+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 1 m~L~gKvalVTGas~GI---G~aiA~~la~~Ga~V~i~~ 36 (256)
T PRK06227 1 MNLSGKVAIVTGGGQGI---GAAIAQTFAENGAKVVIAD 36 (256)
T ss_pred CCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 98999889995866889---9999999998799999996
No 381
>PRK06701 short chain dehydrogenase; Provisional
Probab=76.13 E-value=3.8 Score=20.53 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.|+++|++|+ .|= +.++++.|.+.|.+|.+..
T Consensus 45 GKvalVTGgs-~GI---G~aiA~~la~~GA~V~i~~ 76 (289)
T PRK06701 45 GKVALITGGD-SGI---GRAVAVAFAKEGADIAIVY 76 (289)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9989996825-799---9999999998799899982
No 382
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=76.02 E-value=5.7 Score=19.28 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999965983999957237676244468751687525656533123321110001211013555420344424312
Q gi|254781097|r 21 AVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGF 100 (369)
Q Consensus 21 alala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~kPDvVi~t 100 (369)
+.-|+++|.+.|+++...+. .+ .++- .+.+..+...+. +|+||+|
T Consensus 23 a~~la~~L~~~G~~v~~~~~--------------------Vg---D~~~-----------~I~~~l~~a~~r-~D~vI~t 67 (255)
T COG1058 23 AAFLADELTELGVDLARITT--------------------VG---DNPD-----------RIVEALREASER-ADVVITT 67 (255)
T ss_pred HHHHHHHHHHCCCEEEEEEE--------------------CC---CCHH-----------HHHHHHHHHHHC-CCEEEEC
T ss_conf 99999999964961899996--------------------39---9999-----------999999999718-9989987
Q ss_pred CCCC-C---HHHHHHHHHCCCCCEEECC
Q ss_conf 6532-1---0247888623411012215
Q gi|254781097|r 101 GGYH-S---ISPLLAGMILRIPSMVHEQ 124 (369)
Q Consensus 101 GGy~-s---~P~~iaA~~l~iP~vihEq 124 (369)
||-= + .-.--+|+.++.|+++||.
T Consensus 68 GGLGPT~DDiT~e~vAka~g~~lv~~~~ 95 (255)
T COG1058 68 GGLGPTHDDLTAEAVAKALGRPLVLDEE 95 (255)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 9858996276899999982998566999
No 383
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=75.87 E-value=5.5 Score=19.37 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 6999878--852562079999999996598399995723
Q gi|254781097|r 6 VILLVAG--GTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 6 ~ili~~g--GTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
|+++.+| |+ |-.+-|-|+|-.+.++|+.|.+++...
T Consensus 2 r~i~~~GKGGV-GKTT~AaA~A~~~A~~G~rvLlvStDP 39 (304)
T pfam02374 2 RWIFFGGKGGV-GKTTVSCATAVRLSEQGKKVLLVSTDP 39 (304)
T ss_pred CEEEEECCCCC-CHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 19999579857-489999999999995899299994697
No 384
>PRK08263 short chain dehydrogenase; Provisional
Probab=75.76 E-value=5.9 Score=19.19 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=23.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|.++|+|++ .|= +.++++.|.++|+.|... ++..
T Consensus 4 Kv~lITGas-sGI---G~a~A~~la~~G~~Vv~~-~R~~ 37 (275)
T PRK08263 4 KVWFITGAS-RGF---GREWTEAALERGDRVVAT-ARDT 37 (275)
T ss_pred CEEEEECCC-HHH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 989994674-399---999999999879989999-7989
No 385
>PRK07776 consensus
Probab=75.70 E-value=5.9 Score=19.18 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8769998788525620799999999965983999957
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+.|+++.+|||+|= +.++++.|.+.|..|.+...
T Consensus 7 ~gKv~lITG~~~GI---G~aiA~~la~~Ga~V~i~~~ 40 (252)
T PRK07776 7 TGRTAIVTGASRGI---GLAIAQALAAAGANVVITAR 40 (252)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 99989994778799---99999999987998999979
No 386
>PRK12747 short chain dehydrogenase; Provisional
Probab=75.62 E-value=5.9 Score=19.16 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 887699987885256207999999999659839999572
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
+.|+++|++| ++|= +.++++.|.+.|.+|.+...+
T Consensus 3 ~gKvalITGa-s~GI---G~aiA~~la~~Ga~V~i~~~~ 37 (252)
T PRK12747 3 KGKVALVTGA-SRGI---GRAIAKRLANDGALVAIHYGN 37 (252)
T ss_pred CCCEEEEECC-CCHH---HHHHHHHHHHCCCEEEEECCC
T ss_conf 9599999484-7789---999999999879999996599
No 387
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.60 E-value=5.9 Score=19.16 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+|+++|++|+ +|= +.++++.|.+.|..|.+..
T Consensus 9 gK~alVTG~~-~GI---G~aiA~~la~~Ga~Vvi~~ 40 (254)
T PRK08085 9 GKNILITGSA-QGI---GFLLATGLAEYGAEIIIND 40 (254)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9989996856-789---9999999998699999996
No 388
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=75.58 E-value=5.5 Score=19.41 Aligned_cols=35 Identities=31% Similarity=0.662 Sum_probs=25.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECH
Q ss_conf 9988769998788525620799999999965983--9999572
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDR 41 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~ 41 (369)
|+++ +|+|.+||.+ +.+.|+.|++.|++ +.+++.+
T Consensus 1 M~~~-~iVIIG~G~A-----G~~aA~~lR~~g~~g~Itli~~E 37 (400)
T PRK09754 1 MKEK-TIIIVGGGQA-----AAMAAASLRQQGFTGELHLFSDE 37 (400)
T ss_pred CCCC-EEEEECCHHH-----HHHHHHHHHHCCCCCCEEEEECC
T ss_conf 9967-2999977599-----99999999806949979999899
No 389
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=75.57 E-value=6 Score=19.16 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHCCCCCC-CCCCCCCCHH-HHHCCCEEEE--C--CCCHHHHHH
Q ss_conf 33445443232024660677620255167-76532210011113-4544445144-4300448997--2--542023334
Q gi|254781097|r 203 IVPKSIALIPEMQRKRLVIMQQVREDDKE-KVQKQYDELGCKAT-LACFFKDIER-YIVEANLLIC--R--SGALTVSEI 275 (369)
Q Consensus 203 ~v~~~~~~l~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~~~~-v~~f~~~m~~-~~~~aDlvIs--r--aG~~Ti~E~ 275 (369)
.+.+++..+.+.. .+++ +.++|....+ .+.......+.++. +..|.+.+.. +++.||+++- | +=+.|=+++
T Consensus 311 l~~~~i~~~l~~~-~~~v-ilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~a 388 (487)
T COG0297 311 LLLEAIDELLEQG-WQLV-LLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYA 388 (487)
T ss_pred HHHHHHHHHHHHC-CEEE-EEECCCHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCCEEEECCCCCCCCHHHHHH
T ss_conf 8999999999708-3699-9826827899999999986676099996336899999984498999577676875899999
Q ss_pred HHHCCCEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHH---CCHHH-HHHHHHHHH--HCC
Q ss_conf 55296048753355248---9899989999988988998000199899999999986---18999-999999998--527
Q gi|254781097|r 276 AVIGRPAILVPYPHSVD---QDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAM---KKPSC-LVQMAKQVS--MKG 346 (369)
Q Consensus 276 ~~~g~P~IlIP~p~a~~---~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll---~d~~~-l~~m~~~~~--~~~ 346 (369)
++.|++-|.-|.-.-+| +..+.+ ....|-|++..|. +++.+..++.+.+ .+++. .+.+..++. ..+
T Consensus 389 mryGtvpIv~~tGGLadTV~~~~~~~---~~~~gtGf~f~~~--~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~s 463 (487)
T COG0297 389 MRYGTLPIVRETGGLADTVVDRNEWL---IQGVGTGFLFLQT--NPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFS 463 (487)
T ss_pred HHCCCCCEECCCCCCCCEECCCCCHH---CCCCEEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 87188446754688654103766110---0375037998269--989999999999999608789999999864246668
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 8327999999999999855
Q gi|254781097|r 347 KPQAVLMLSDLVEKLAHVK 365 (369)
Q Consensus 347 ~~~aa~~i~~~i~~la~~k 365 (369)
-..+|++-.++=+.+++.-
T Consensus 464 w~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 464 WDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred CHHHHHHHHHHHHHHHCCC
T ss_conf 0357888999999986466
No 390
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=75.44 E-value=6 Score=19.13 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.+++++|.++|..|.+..
T Consensus 9 ~gK~alVTG~s~GI---G~aiA~~la~~Ga~Vii~~ 41 (265)
T PRK07097 9 KGKIALITGASYGI---GFAIAKAYAEAGATIVFND 41 (265)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989995857689---9999999998699999995
No 391
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.40 E-value=5.8 Score=19.21 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 769998788525620799999999965983999957
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
-|+++.+|||.|= +++.+++|.++|..|++.+-
T Consensus 14 GK~~vITGa~sGI---G~~~a~~La~~Ga~Vil~~R 46 (314)
T PRK05854 14 GKLAVVTGASSGL---GFGLARRLAAAGADVILPVR 46 (314)
T ss_pred CCEEEECCCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 9989990688299---99999999978498999979
No 392
>KOG1201 consensus
Probab=75.27 E-value=5.6 Score=19.35 Aligned_cols=29 Identities=31% Similarity=0.730 Sum_probs=20.9
Q ss_pred CCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 876999878852-5620799999999965983999
Q gi|254781097|r 4 NNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYL 37 (369)
Q Consensus 4 ~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~ 37 (369)
...++|+|||.| || ++|.|+.++|-.+.+
T Consensus 38 g~~vLITGgg~GlGr-----~ialefa~rg~~~vl 67 (300)
T KOG1201 38 GEIVLITGGGSGLGR-----LIALEFAKRGAKLVL 67 (300)
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHHCCEEEE
T ss_conf 988999689860789-----999999970784899
No 393
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=75.19 E-value=2.8 Score=21.50 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.1
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 987885256207999999999659839999
Q gi|254781097|r 9 LVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 9 i~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
|.||+|.|= +.|+|+.|-++|..|.+.
T Consensus 2 lVTGasRGI---G~AIA~~LA~~Ga~V~i~ 28 (238)
T TIGR01830 2 LVTGASRGI---GRAIALKLAKEGAKVIIT 28 (238)
T ss_pred EECCCCCHH---HHHHHHHHHHCCCEEEEE
T ss_conf 671678616---799999998679959996
No 394
>PRK06197 short chain dehydrogenase; Provisional
Probab=75.03 E-value=6.1 Score=19.08 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++.+|||.|= +++.+++|.++|..|++.+
T Consensus 17 K~~lITGa~sGI---G~~~A~~La~~ga~Vil~~ 47 (306)
T PRK06197 17 RVAVVTGANTGL---GYETAAALAAKGAHVVLAV 47 (306)
T ss_pred CEEEECCCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 999991689599---9999999997849899997
No 395
>CHL00194 ycf39 Ycf39; Provisional
Probab=74.93 E-value=4.9 Score=19.75 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+|+++| ||| .+ +..+.++|.++||+|...+-
T Consensus 2 ~ILV~G-ATG-~l--Gr~vVr~Ll~~G~~Vr~lvR 32 (319)
T CHL00194 2 SLLVIG-ATG-TL--GRQIVRRALDEGYQVKCLVR 32 (319)
T ss_pred EEEEEC-CCC-HH--HHHHHHHHHHCCCCEEEEEC
T ss_conf 799989-985-89--99999999968890899957
No 396
>PRK06526 transposase; Provisional
Probab=74.91 E-value=6.2 Score=19.04 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=4.6
Q ss_pred CCEEEEEECC
Q ss_conf 8148986304
Q gi|254781097|r 185 PFHLLVFGGS 194 (369)
Q Consensus 185 ~~~ILv~GGS 194 (369)
..+|+++|.+
T Consensus 98 ~~Nvil~G~~ 107 (254)
T PRK06526 98 KENVVFLGPP 107 (254)
T ss_pred CCCEEEECCC
T ss_conf 8878998999
No 397
>PRK00536 speE spermidine synthase; Provisional
Probab=74.64 E-value=5.1 Score=19.62 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.8
Q ss_pred CCEEEEECCCCHH
Q ss_conf 8769998788525
Q gi|254781097|r 4 NNVILLVAGGTGG 16 (369)
Q Consensus 4 ~~~ili~~gGTGG 16 (369)
+|++||.|||.||
T Consensus 73 Pk~VLIIGGGDGG 85 (262)
T PRK00536 73 LKEVLIVDGFDLE 85 (262)
T ss_pred CCEEEEECCCCHH
T ss_conf 7879998687559
No 398
>PRK12744 short chain dehydrogenase; Provisional
Probab=74.63 E-value=6.3 Score=19.00 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=23.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
-|+.+.+||++|= +.++++.|.++|.+|.++.
T Consensus 8 gKvalVTGgs~GI---G~aiA~~la~~Ga~vv~~~ 39 (257)
T PRK12744 8 GKVVLIAGGAKNL---GGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9989992887589---9999999998799899993
No 399
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.58 E-value=6 Score=19.14 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.++|++| ++|= +.+++++|.++|..|.+..
T Consensus 2 Kv~lITGa-ssGI---G~a~A~~la~~Ga~vvl~~ 32 (263)
T PRK06181 2 KVVIITGA-SEGI---GRALAVRLARAGARLVLAA 32 (263)
T ss_pred CEEEEECC-CCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99999581-0199---9999999998799899998
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.46 E-value=4.9 Score=19.77 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=67.0
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 56673253044432456543334433114478148986304322210233344544323202466067762025516776
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKV 233 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~~ 233 (369)
+.+.+.++|.| +.+.+..... .........|++.||+. +...+.+ .|. ....++++ ..+.++-
T Consensus 205 ~gD~l~vig~~--~~i~~~~~~~--g~~~~~~~~v~I~Ggg~----ig~~la~---~L~--~~~~v~iI----e~d~~~~ 267 (455)
T PRK09496 205 AGDEVFFVAAS--EHIRRVMSEL--GRLEKPVKRIMIAGGGN----IGLYLAK---LLE--KGYSVKLI----ERDPERA 267 (455)
T ss_pred CCCEEEEEECH--HHHHHHHHHH--CCCCCCCCEEEEECCCH----HHHHHHH---HHH--CCCEEEEE----CCCHHHH
T ss_conf 38899999257--7699999985--86546665189987869----9999999---874--08838997----0898999
Q ss_pred HHHHHHCCCCCCC-CCCCCCCH----HHHHCCCEEEECCCC-----HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 5322100111134-54444514----443004489972542-----0233345529604875335524898999899999
Q gi|254781097|r 234 QKQYDELGCKATL-ACFFKDIE----RYIVEANLLICRSGA-----LTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQ 303 (369)
Q Consensus 234 ~~~~~~~~~~~~v-~~f~~~m~----~~~~~aDlvIsraG~-----~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~ 303 (369)
+.....++ ++.| .+--.|.. +=+..+|++|+--|. .++.-+-.+|.|-++. -.. ...+...++
T Consensus 268 ~~la~~l~-~~~Vi~GD~td~~~L~e~gi~~aD~~ia~T~~De~Ni~~~llAk~~g~~~~ia----~v~--~~~y~~l~~ 340 (455)
T PRK09496 268 EELAEELP-NTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA----LIN--RSAYVDLVQ 340 (455)
T ss_pred HHHHHHCC-CCEEEECCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEE----EEC--CHHHHHHHH
T ss_conf 99997478-53999788768899976364556489990388188999999998739973688----844--667887653
Q ss_pred HCCCEEEEEHHCCCHHHHHHHHHHHHCCH
Q ss_conf 88988998000199899999999986189
Q gi|254781097|r 304 EGGGAKVITENFLSPERLAEELCSAMKKP 332 (369)
Q Consensus 304 ~~G~a~~i~~~~~~~~~l~~~i~~ll~d~ 332 (369)
+.|.-..+.++.+ .+..|.+.+..+
T Consensus 341 ~lgid~~isp~~~----~a~~I~~~i~~~ 365 (455)
T PRK09496 341 GLGIDIAISPRQA----TISAILRHVRRG 365 (455)
T ss_pred HCCCCEEECHHHH----HHHHHHHHHCCC
T ss_conf 2488657888999----999999984056
No 401
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=74.36 E-value=6.4 Score=18.95 Aligned_cols=32 Identities=34% Similarity=0.754 Sum_probs=22.7
Q ss_pred CCEEEEECC-CC-HHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 876999878-85-256207999999999659839999
Q gi|254781097|r 4 NNVILLVAG-GT-GGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 4 ~~~ili~~g-GT-GGHi~palala~~L~~~g~~v~~~ 38 (369)
.++|++.+| |- ||- ++++|+.|.++|++|.++
T Consensus 28 ~~~v~il~G~GNNGGD---Glv~Ar~L~~~g~~V~v~ 61 (170)
T pfam03853 28 GKRVLVLCGPGNNGGD---GLAAARHLAQRGYKVTVL 61 (170)
T ss_pred CCEEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEE
T ss_conf 8869999879987288---999999999879907999
No 402
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.35 E-value=6.4 Score=18.95 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=25.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+||+|+|+++| = +.+++++|.++|+.|.+..
T Consensus 1 ~rVlITGassG-I---G~alA~~la~~G~~V~l~~ 31 (270)
T PRK05650 1 NRVMITGAASG-L---GRAIALRWAREGWRLALAD 31 (270)
T ss_pred CEEEEECCCCH-H---HHHHHHHHHHCCCEEEEEE
T ss_conf 97999887649-9---9999999998899899997
No 403
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=74.25 E-value=5.2 Score=19.55 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=15.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999986189999999999985
Q gi|254781097|r 323 EELCSAMKKPSCLVQMAKQVSM 344 (369)
Q Consensus 323 ~~i~~ll~d~~~l~~m~~~~~~ 344 (369)
.+|.+++++|.+..++.+.++.
T Consensus 292 pav~~lIre~gk~~qi~~~i~~ 313 (350)
T TIGR01420 292 PAVRNLIREEGKTHQIKSVIQT 313 (350)
T ss_pred HHHHHHHCCCCCHHHHHHHHHH
T ss_conf 7899960287887689999871
No 404
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.17 E-value=6.4 Score=18.92 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.|.++|+||+ .|= +.+++++|.++|..|.+..
T Consensus 6 gKvalITGas-~GI---G~aiA~~la~~Ga~V~l~~ 37 (238)
T PRK07666 6 GKNALITGAG-RGI---GRAVAIALAKEGVNVGLLA 37 (238)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9989991637-789---9999999998799899998
No 405
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=74.15 E-value=6.4 Score=18.92 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 99999999965983999
Q gi|254781097|r 21 AVALSHELKNRGYAVYL 37 (369)
Q Consensus 21 alala~~L~~~g~~v~~ 37 (369)
+-.+.+.++++|.++.+
T Consensus 20 a~kv~~~~~e~gi~v~i 36 (94)
T PRK10310 20 AEEIKELCQSHNIPVEL 36 (94)
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999985980689
No 406
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=74.11 E-value=6 Score=19.13 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99887--6999878852562079999999996598399995
Q gi|254781097|r 1 MSENN--VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~~--~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
||++. -|+|+|||-. ++++|-.|.++|++|.++-
T Consensus 1 m~~~~~~DV~IvGaGp~-----Gl~lA~~L~~~G~~v~liE 36 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVV-----GAACALALADAGLSVALVE 36 (392)
T ss_pred CCCCCCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 99999998899990699-----9999999986699789991
No 407
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.07 E-value=6.5 Score=18.90 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=22.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.++|++ |++|= +.++++.|.+.|..|.+..
T Consensus 8 KvalVTG-a~~GI---G~aiA~~~a~~Ga~V~i~~ 38 (259)
T PRK07063 8 KVALVTG-AAQGI---GAAIARAFVREGAAVALAD 38 (259)
T ss_pred CEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 8899958-78789---9999999998799899997
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.61 E-value=6.6 Score=18.83 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 87699987885256207999999999659839999572
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
.|+|+|.|.|-. ++++++.|.++|++|.+..++
T Consensus 14 gk~v~V~GlG~s-----G~s~a~~L~~~G~~v~~~D~~ 46 (481)
T PRK01438 14 GLRVVVAGLGVS-----GFPAADALHELGASVTVVADG 46 (481)
T ss_pred CCEEEEEEECHH-----HHHHHHHHHHCCCEEEEEECC
T ss_conf 998999957588-----999999999679989999799
No 409
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=73.43 E-value=6.7 Score=18.80 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=15.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEECC
Q ss_conf 14898630432221023334454432320-2466067762025
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVRE 227 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g~ 227 (369)
..++|-||+ |-..+-.. ++.+.+. ....+.+++.+..
T Consensus 105 ~ivlIAgG~-GitP~~s~----l~~~~~~~~~~~v~l~~g~r~ 142 (231)
T cd06215 105 KLLLLSAGS-GITPMMSM----ARWLLDTRPDADIVFIHSARS 142 (231)
T ss_pred CEEEEECCC-CCCCHHHH----HHHHHHHCCCCCCEEEEECCC
T ss_conf 789998167-77847999----999997099997189970699
No 410
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=73.26 E-value=6.8 Score=18.77 Aligned_cols=41 Identities=17% Similarity=0.411 Sum_probs=29.5
Q ss_pred EEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECH-HHHHHH
Q ss_conf 699987-885256207999999999659839999572-376762
Q gi|254781097|r 6 VILLVA-GGTGGHVFPAVALSHELKNRGYAVYLITDR-RARSFI 47 (369)
Q Consensus 6 ~ili~~-gGTGGHi~palala~~L~~~g~~v~~~~~~-~~~~~~ 47 (369)
||++++ +|. +|-.-..-++..|+..|++|++.+.. ..+.++
T Consensus 1 kvvi~~v~gD-~H~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v 43 (119)
T cd02067 1 KVVIATVGGD-GHDIGKNIVARALRDAGFEVIDLGVDVPPEEIV 43 (119)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 9899963985-677899999999997899899899999999999
No 411
>PRK06382 threonine dehydratase; Provisional
Probab=73.22 E-value=6.8 Score=18.77 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHCCCCEEE-ECCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 5554203444243-126532102478886234110122
Q gi|254781097|r 86 LRLIKKLKPNVVV-GFGGYHSISPLLAGMILRIPSMVH 122 (369)
Q Consensus 86 ~~ii~~~kPDvVi-~tGGy~s~P~~iaA~~l~iP~vih 122 (369)
.++-++.+..-|+ ...|-++-.+.++|+.+++|..|.
T Consensus 59 ~~L~~e~~~~GVVaaSaGNHaqgvA~aa~~lgi~a~Iv 96 (400)
T PRK06382 59 SKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKIV 96 (400)
T ss_pred HHCCHHHHCCCEEEECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 85787776287799589946999999999839988999
No 412
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=73.22 E-value=4.2 Score=20.23 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=37.4
Q ss_pred CEEEEECCCC-H-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 7699987885-2-5620799999999965983999957237676244468751687525656533123321110001211
Q gi|254781097|r 5 NVILLVAGGT-G-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 5 ~~ili~~gGT-G-GHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
++||++|=+- | -.++|+..++++|..+... ....+... ..++.+ .++.
T Consensus 2 ~~ILvTGFePFgg~~~NPS~~~v~~L~~~~~~----------------~~~~i~~~-~LPv~f-------------~~~~ 51 (212)
T PRK13196 2 PTLLLTGFEPFHTHPDNPSAQAAEALHGLALP----------------GGAGVHSA-LLPVEP-------------HAAA 51 (212)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC----------------CCCEEEEE-EECCCH-------------HHHH
T ss_conf 97999344799989878489999974125688----------------98779999-948728-------------8899
Q ss_pred HHHHHHHHHCCCCEEEECC
Q ss_conf 0135554203444243126
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFG 101 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tG 101 (369)
-.....+++++||+||++|
T Consensus 52 ~~l~~~i~~~~Pd~vl~~G 70 (212)
T PRK13196 52 AALRALLEEHDPDAVLLTG 70 (212)
T ss_pred HHHHHHHHHHCCCEEEEEC
T ss_conf 9999999971999899925
No 413
>PRK06523 short chain dehydrogenase; Provisional
Probab=73.21 E-value=6.8 Score=18.76 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|++||++ |+.|= +.+++++|.+.|.+|.+..
T Consensus 10 K~alITG-~s~GI---G~aia~~la~~Ga~V~~~~ 40 (260)
T PRK06523 10 KRALVTG-GTKGI---GAATVARFREAGARVVTTA 40 (260)
T ss_pred CEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9899947-57699---9999999998799999994
No 414
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=73.16 E-value=5.7 Score=19.31 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=26.0
Q ss_pred EEEECC-CCH-HHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999878-852-5620799999999965983999957
Q gi|254781097|r 7 ILLVAG-GTG-GHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 7 ili~~g-GTG-GHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++.+| | | |-.+-|.++|-+|.++|+.|.++..
T Consensus 1 i~~~sGKG-GVGKTTvAaalA~~lA~~G~rvLlvs~ 35 (217)
T cd02035 1 VIFFTGKG-GVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 98997899-661999999999999968994999958
No 415
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607 This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of Escherichia coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis thaliana. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. ; GO: 0004644 phosphoribosylglycinamide formyltransferase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=73.02 E-value=6.8 Score=18.73 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=47.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHH--CCCEE---EEEECHHHHHHHCCCC--CCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 76999878852562079999999996--59839---9995723767624446--87516875256565331233211100
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKN--RGYAV---YLITDRRARSFITDFP--ADSIYEIVSSQVRFSNPFVFWNSLVI 77 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~--~g~~v---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (369)
.-||+||.|| = -.||.++++. .+.+. .+++++....=+++-. +.+...+....+.. +.-+--+..--
T Consensus 3 i~VLiSG~GS--N---LqAiiDA~~~~~~~~~A~v~lVisn~p~A~g~~RA~~~~iP~~v~~~~~f~s-GiakeDkaara 76 (215)
T TIGR00639 3 IVVLISGSGS--N---LQAIIDAIKEGQGKIDASVVLVISNKPKAYGLERAAQAGIPTKVLSLKDFDS-GIAKEDKAARA 76 (215)
T ss_pred EEEEEECCCC--H---HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCC-CCCCCHHHHHH
T ss_conf 6899842871--7---9999999852127867368999865866266777887589467742167887-75310167888
Q ss_pred CCCCCH--HHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHCCCCCE
Q ss_conf 012110--13555420344424312653210-24788862341101
Q gi|254781097|r 78 LWKAFI--ASLRLIKKLKPNVVVGFGGYHSI-SPLLAGMILRIPSM 120 (369)
Q Consensus 78 ~~~~~~--~~~~ii~~~kPDvVi~tGGy~s~-P~~iaA~~l~iP~v 120 (369)
-.+.-+ .....++..+||+|++= ||+=. ..-+...+-+.|++
T Consensus 77 kar~~~d~~i~~~l~~~~vdlvvlA-GfMRIL~~~Fl~~f~grP~l 121 (215)
T TIGR00639 77 KAREAFDQAIAEELKAAEVDLVVLA-GFMRILGPTFLSAFAGRPIL 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEC-CHHHHCCHHHHHHHCCCCEE
T ss_conf 8789999999999996099699984-61444166889862799847
No 416
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=73.01 E-value=5.6 Score=19.36 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 699987885256207999999999659839999
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
-|+|+|||.+ ++++|-.|.++|++|.++
T Consensus 3 DV~IvGaG~a-----Gl~lA~~L~~~Gi~v~V~ 30 (349)
T pfam01494 3 DVLIVGGGPA-----GLMLALLLARAGVRVVLV 30 (349)
T ss_pred CEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 7899992889-----999999998779989999
No 417
>PRK06953 short chain dehydrogenase; Provisional
Probab=72.91 E-value=6.9 Score=18.72 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=23.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|++||+|| +.|= ++++++.|.++|+.|+... +..
T Consensus 2 K~~LVTGa-s~GI---G~a~a~~la~~G~~V~~~~-R~~ 35 (222)
T PRK06953 2 KTVLIVGA-SRGI---GLEFVRQYRADGWRVIATA-RDA 35 (222)
T ss_pred CEEEECCC-CHHH---HHHHHHHHHHCCCEEEEEE-CCH
T ss_conf 99999475-7299---9999999998889999996-888
No 418
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=72.80 E-value=6.3 Score=18.96 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=5.9
Q ss_pred CCCCCEEECCC
Q ss_conf 34110122153
Q gi|254781097|r 115 LRIPSMVHEQN 125 (369)
Q Consensus 115 l~iP~vihEqN 125 (369)
.|+.+.|.|++
T Consensus 278 rG~~VtVlDr~ 288 (660)
T PRK01747 278 RGWQVTLYEAD 288 (660)
T ss_pred CCCEEEEEECC
T ss_conf 89968999479
No 419
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=72.48 E-value=7 Score=18.65 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 11 ~gKvalVTG~s~GI---G~aia~~la~~Ga~V~i~~ 43 (259)
T PRK08213 11 TGKTALVTGGSRGL---GLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989994877689---9999999998699999997
No 420
>pfam06626 DUF1152 Protein of unknown function (DUF1152). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=72.31 E-value=5.1 Score=19.63 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=25.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99878852562079999999996598399995
Q gi|254781097|r 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 8 li~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
++.+|| ||-++-++.++..|++.|.++++.+
T Consensus 2 v~g~GG-GgDv~sa~~l~~~L~~~G~~~~lg~ 32 (297)
T pfam06626 2 VLGIGG-GGDVVSAAVLAGALRRLGVRAVLGS 32 (297)
T ss_pred EEEECC-CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 676347-7257737999999985698538976
No 421
>PRK07538 hypothetical protein; Provisional
Probab=72.26 E-value=6.4 Score=18.94 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=23.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 699987885256207999999999659839999
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
+|+|++||-+ ++++|-.|.++|++|.++
T Consensus 2 ~V~IvGaG~a-----GL~lA~~L~~~Gi~v~V~ 29 (413)
T PRK07538 2 KVLIAGGGIG-----GLTLALTLHQRGIEVEVF 29 (413)
T ss_pred EEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 8999990589-----999999999789998999
No 422
>TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049 This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage.
Probab=72.08 E-value=1.9 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=15.6
Q ss_pred CHHHHHHHHHCCCCEEEECCC
Q ss_conf 101355542034442431265
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGG 102 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGG 102 (369)
-+.+--+|++.|||+||.||+
T Consensus 55 A~~~TLLL~~~KPD~~INTGS 75 (229)
T TIGR01704 55 ALSATLLLDRYKPDVVINTGS 75 (229)
T ss_pred HHHHHHHHHCCCCCEEEECCC
T ss_conf 988888875079976985887
No 423
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.06 E-value=7.2 Score=18.59 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+-|+.+.+||++|= +.++++.|.+.|..|.+..
T Consensus 15 ~gKvalVTGa~~GI---G~aiA~~la~~Ga~V~i~~ 47 (262)
T PRK06114 15 DGQVAFVTGAGSGI---GQRIAIGLAQAGADVALFD 47 (262)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 99989996847899---9999999998799899995
No 424
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=72.02 E-value=7.2 Score=18.58 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHC----C-CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 9999999996598399995723767624----4-4687516875256565331233211100012110135554203444
Q gi|254781097|r 21 AVALSHELKNRGYAVYLITDRRARSFIT----D-FPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPN 95 (369)
Q Consensus 21 alala~~L~~~g~~v~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~kPD 95 (369)
...+.+++++.|-.+.++++....+... + .....+ .+.-..+.+ ++. ...+.+.....+++++|
T Consensus 18 ~~~lg~~~~~~G~r~liVtd~~~~~~~~~~v~~~L~~~gi-~~~~~~~~~-~pt---------~~~v~~~~~~~~~~~~D 86 (366)
T PRK09423 18 LAQLGEYLKPLGKRALLIADEFVLGIVGDTVEASLKDAGL-DVVFEVFNG-ECS---------DNEIDRLVAIAEENGCD 86 (366)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCC-EEEEEECCC-CCC---------HHHHHHHHHHHHHCCCC
T ss_conf 9999999998499589998952899899999999986798-699973389-999---------99999999999864999
Q ss_pred EEEECCCCCCHHH-HHHHHHCCCCCEE
Q ss_conf 2431265321024-7888623411012
Q gi|254781097|r 96 VVVGFGGYHSISP-LLAGMILRIPSMV 121 (369)
Q Consensus 96 vVi~tGGy~s~P~-~iaA~~l~iP~vi 121 (369)
+||+.||=.+.=. -..|...++|++.
T Consensus 87 ~IiavGGGS~iD~AKaia~~~~~P~i~ 113 (366)
T PRK09423 87 VIIGIGGGKTLDTAKAVADYLGVPVVI 113 (366)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 899937838877799999982899799
No 425
>PRK07832 short chain dehydrogenase; Provisional
Probab=71.90 E-value=7.2 Score=18.56 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+++|+||++ |= +.+++++|.++|..|.+. ++..
T Consensus 1 K~alITGass-GI---G~a~A~~la~~Ga~v~l~-~r~~ 34 (272)
T PRK07832 1 KRCFVTGAAS-GI---GRATALRLAAQGAELFLT-DRDA 34 (272)
T ss_pred CEEEEECCCH-HH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 9799947201-99---999999999889989999-8988
No 426
>PRK07775 short chain dehydrogenase; Provisional
Probab=71.81 E-value=7.3 Score=18.55 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8876999878852562079999999996598399995
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.+|+.+|+++ ++|= +.++++.|.++|..|.+..
T Consensus 9 ~~KtAlVTGA-ssGI---G~aiA~~la~~G~~V~l~~ 41 (275)
T PRK07775 9 ARRPAIVAGA-SSGI---GAATAIELAAHGFPVALGA 41 (275)
T ss_pred CCCEEEEECC-CHHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9997999462-3599---9999999998799899998
No 427
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=71.60 E-value=7.4 Score=18.52 Aligned_cols=39 Identities=26% Similarity=0.546 Sum_probs=28.0
Q ss_pred CCCCCEEEEECC---CCH----HHHHH---HHHHHHHHHHCCCEEEEEEC
Q ss_conf 998876999878---852----56207---99999999965983999957
Q gi|254781097|r 1 MSENNVILLVAG---GTG----GHVFP---AVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~~~~ili~~g---GTG----GHi~p---alala~~L~~~g~~v~~~~~ 40 (369)
|.+ ++++|++. -+| ||.+. |=.+++..+-+|++|.|+++
T Consensus 1 mm~-k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~G 49 (644)
T PRK12267 1 MMK-KTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTG 49 (644)
T ss_pred CCC-CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999-9989968998889985545348789999999999846997598487
No 428
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.59 E-value=7.4 Score=18.51 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 876999878852562079999999996598399995723
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
.|.++|++|+ .|= +.+++++|.+.|..|.+...+.
T Consensus 3 gKvalITGgs-~GI---G~aiA~~la~~Ga~V~i~~~~~ 37 (249)
T PRK06077 3 DKVVVVTGSG-RGI---GRAIAVRLAKEGAKVVVNAKKR 37 (249)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEECCC
T ss_conf 1989992636-789---9999999998799899984887
No 429
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=71.51 E-value=7.4 Score=18.50 Aligned_cols=45 Identities=33% Similarity=0.543 Sum_probs=35.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
Q ss_conf 7699987885256207999999999659839999572376762444
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF 50 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~ 50 (369)
|||++.-+| |=-.|-+.-|++.|+++|++|.++-...+.+|+.+.
T Consensus 72 KkIlLgVtG-sIAAYKa~~LvR~L~k~Ga~V~vvmT~~A~~FVtpl 116 (476)
T PRK13982 72 KRITLIIGG-GIAAYKALDLIRRLKERGAEVRCVLTKAAQQFVTPL 116 (476)
T ss_pred CEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHH
T ss_conf 979999674-899999999999999789989999787786341899
No 430
>PRK08223 hypothetical protein; Validated
Probab=71.50 E-value=2.2 Score=22.16 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=18.2
Q ss_pred CCEEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 87699987-88525620799999999965983999957
Q gi|254781097|r 4 NNVILLVA-GGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~-gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
+.+|+|++ ||.|++ .+..|...|.--..+.|
T Consensus 27 ~s~VlVvG~GGlGs~------~a~~LAraGVG~i~lvD 58 (287)
T PRK08223 27 NSRVAIAGLGGVGGV------HLLTLARLGIGKFNIAD 58 (287)
T ss_pred CCCEEEECCCHHHHH------HHHHHHHCCCCEEEEEE
T ss_conf 596899936755799------99999982897599974
No 431
>TIGR02619 TIGR02619 putative CRISPR-associated protein, APE2256 family; InterPro: IPR013442 This entry represents a conserved region of about 150 amino acids found in at least five archaeal and three bacterial species. These species all contain CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus..
Probab=71.41 E-value=2.8 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEECCCCC--CHHHHHHHHHCC-CCC-EEECC
Q ss_conf 243126532--102478886234-110-12215
Q gi|254781097|r 96 VVVGFGGYH--SISPLLAGMILR-IPS-MVHEQ 124 (369)
Q Consensus 96 vVi~tGGy~--s~P~~iaA~~l~-iP~-vihEq 124 (369)
++..||||= |.-..++|.+.| .|+ ||||+
T Consensus 109 ~~~~TGGFKpea~~l~~~asl~GA~~vfYiHE~ 141 (151)
T TIGR02619 109 LLAATGGFKPEAAVLVLVASLAGALPVFYIHEA 141 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 888599985889999999998534653432201
No 432
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=71.27 E-value=7.5 Score=18.47 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99887699987885256207999999999659
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRG 32 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g 32 (369)
|=++|+||++||+ | -+ +..+.+.|.+++
T Consensus 1 ~~~~K~ILVTGGa-G-fI--GS~lv~~Ll~~~ 28 (324)
T TIGR03589 1 MFNNKSILITGGT-G-SF--GKAFISRLLENY 28 (324)
T ss_pred CCCCCEEEEECCC-C-HH--HHHHHHHHHHCC
T ss_conf 9993999990797-7-99--999999999729
No 433
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=71.23 E-value=7.5 Score=18.46 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=23.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+++|+ ||++|= +.++++.|.+.|.+|.+. ++..
T Consensus 10 K~alVT-G~s~GI---G~aiA~~la~~Ga~Vvi~-~r~~ 43 (251)
T PRK07523 10 RRALIT-GSSQGI---GYALAKGLAQAGAEVILN-GRDA 43 (251)
T ss_pred CEEEEE-CCCCHH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 989995-836699---999999999879999999-6998
No 434
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=71.15 E-value=5.2 Score=19.55 Aligned_cols=35 Identities=11% Similarity=0.300 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 4898630432221023334454432320-246606776202
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVR 226 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g 226 (369)
.|+|-||| |-..+--. +..+... ....+.+++...
T Consensus 116 ~vlIAgG~-GItP~~sm----l~~l~~~~~~~~i~l~yg~r 151 (247)
T cd06184 116 LVLISAGV-GITPMLSM----LEALAAEGPGRPVTFIHAAR 151 (247)
T ss_pred EEEEECCC-CCCHHHHH----HHHHHHCCCCCCEEEEEECC
T ss_conf 89996687-63549999----99998649998489999569
No 435
>PRK08198 threonine dehydratase; Provisional
Probab=70.78 E-value=7.7 Score=18.39 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHCCCCEEE-ECCCCCCHHHHHHHHHCCCCCEEEC
Q ss_conf 554203444243-1265321024788862341101221
Q gi|254781097|r 87 RLIKKLKPNVVV-GFGGYHSISPLLAGMILRIPSMVHE 123 (369)
Q Consensus 87 ~ii~~~kPDvVi-~tGGy~s~P~~iaA~~l~iP~vihE 123 (369)
++-++.+..-|+ ...|-++-.+.+||+.+++|..|.=
T Consensus 65 ~L~~e~~~~GVVaaSaGNHaqgvA~aa~~~gi~a~Ivm 102 (406)
T PRK08198 65 SLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVM 102 (406)
T ss_pred HCCHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 37976606857997787699999999998199889993
No 436
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=70.78 E-value=7.7 Score=18.39 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+|+++|++ |++|= +.++++.|.+.|.+|.+..
T Consensus 3 gKvalITG-~s~GI---G~aia~~la~~Ga~V~i~~ 34 (250)
T TIGR03206 3 DKTAIVTG-GGGGI---GGATCRRFAEEGAKVAVFD 34 (250)
T ss_pred CCEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 19999968-57689---9999999998799999997
No 437
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=70.78 E-value=7.7 Score=18.39 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=44.2
Q ss_pred EEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEE--CHH-HHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99987-8852562079999999996598399995--723-7676244468751687525656533123321110001211
Q gi|254781097|r 7 ILLVA-GGTGGHVFPAVALSHELKNRGYAVYLIT--DRR-ARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 7 ili~~-gGTGGHi~palala~~L~~~g~~v~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
|=+.| ||+| +-+||+-|.++|+.|.=.- ... ....+. ..+.++| ..+..-
T Consensus 2 iHFvGIGG~G-----MSglA~~L~~~G~~VsGSD~~~~~y~t~~L~-~~Gi~I~---~g~h~~----------------- 55 (491)
T TIGR01082 2 IHFVGIGGIG-----MSGLAEILLNRGYKVSGSDIAENAYTTKRLE-ALGIKIY---IGEHSA----------------- 55 (491)
T ss_pred EEEEECCHHC-----HHHHHHHHHHCCCCEEEEECCCCCCHHHHHH-HCCCEEC---CCCCCH-----------------
T ss_conf 5789606203-----4489999985789087720335631589998-6787662---799677-----------------
Q ss_pred HHHHHHHHHCCCCEEEECCCCC--CHHHHHHHHHCCCCCEE
Q ss_conf 0135554203444243126532--10247888623411012
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYH--SISPLLAGMILRIPSMV 121 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~--s~P~~iaA~~l~iP~vi 121 (369)
+.+.-+....+|+||..-.|+ .-|-+..|+.++||++-
T Consensus 56 -~n~~~~p~g~~~vVv~S~~Ai~~~NpEi~~A~~~~IPv~~ 95 (491)
T TIGR01082 56 -ENLDDLPTGAADVVVVSAAAIKEDNPEIVEAKERGIPVIR 95 (491)
T ss_pred -HHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEC
T ss_conf -9820367897437998640337888889999964888133
No 438
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=70.75 E-value=7.7 Score=18.39 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=23.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9998788525620799999999965983999957237
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|++.+|+|+|= +.++++.|.++|+.|.... ++.
T Consensus 2 VvlVTGassGI---G~a~A~~la~~Ga~Vv~~~-r~~ 34 (248)
T PRK10538 2 IVLVTGATAGF---GECITRRFIQNGHKVIATG-RRQ 34 (248)
T ss_pred EEEEECCCCHH---HHHHHHHHHHCCCEEEEEE-CCH
T ss_conf 99998886699---9999999998799999998-999
No 439
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=70.72 E-value=7.2 Score=18.60 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=22.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCC-EEEEE
Q ss_conf 6999878852562079999999996598-39999
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGY-AVYLI 38 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~-~v~~~ 38 (369)
||+|+|||-+| +++|-.|.++|+ +|.+.
T Consensus 2 kV~IVGaGiaG-----L~lA~~L~r~g~i~V~V~ 30 (414)
T TIGR03219 2 RVAIIGGGIAG-----VALALNLCKHSHLNVQLF 30 (414)
T ss_pred EEEEECCCHHH-----HHHHHHHHHCCCCCEEEE
T ss_conf 89999944899-----999999985399988999
No 440
>PRK06139 short chain dehydrogenase; Provisional
Probab=70.65 E-value=7.7 Score=18.37 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.|.++|++++ +|= +.+++++|.++|..|.+..
T Consensus 6 gKvvlITGAS-sGI---G~aiA~~~A~~Ga~Vvl~~ 37 (324)
T PRK06139 6 GAVVVITGAS-SGI---GRATAEAFARRGARLVLAA 37 (324)
T ss_pred CCEEEEECHH-HHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9779993825-499---9999999998799899998
No 441
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.33 E-value=7.8 Score=18.33 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9988-76999878852562079999999996598399995
Q gi|254781097|r 1 MSEN-NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~-~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++ --|+|+|||-. ++++|-.|.++|++|.++-
T Consensus 1 M~~~~~DV~IvGaGp~-----Gl~lAl~La~~G~~v~lie 35 (386)
T PRK07494 1 MEKEHTDIAVSGGGPA-----GLAAAIALASAGASVALVA 35 (386)
T ss_pred CCCCCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 9978886899990689-----9999999987899889995
No 442
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=70.31 E-value=7.8 Score=18.32 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 76999878852-56207999999999659839999
Q gi|254781097|r 5 NVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 5 ~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
+++.|+|-.|| |-.+.+.+++++|+.+|+++...
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 36999827999649999999999999689705987
No 443
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.25 E-value=7.9 Score=18.32 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.|+++|++|+ +|= +.++++.|.+.|..|....
T Consensus 5 gK~alVTGas-~GI---G~aia~~~a~~Ga~V~~~d 36 (237)
T PRK06550 5 TKTVLVTGAA-SGI---GLAQARAFLEQGAHVYGVD 36 (237)
T ss_pred CCEEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9899993747-799---9999999998799999970
No 444
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.22 E-value=7.3 Score=18.56 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9998788525620799999999965983999957
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|+|+| ||| .+ +.+|++.|.++||+|..++.
T Consensus 3 iLVtG-~tG-fi--G~~l~~~L~~~g~~V~~~~r 32 (314)
T COG0451 3 ILVTG-GAG-FI--GSHLVERLLAAGHDVRGLDR 32 (314)
T ss_pred EEEEC-CCC-HH--HHHHHHHHHHCCCEEEEEEC
T ss_conf 99992-887-77--99999999858997999917
No 445
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.18 E-value=7.9 Score=18.31 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=25.4
Q ss_pred CCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9988--76999878852562079999999996598399995
Q gi|254781097|r 1 MSEN--NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 1 M~~~--~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|.++ -|+.+++|++.|= +.++|++|-+.|..|.+..
T Consensus 2 Mm~~L~GKvAlVTGasrGI---GraiA~~LA~~GA~V~i~~ 39 (305)
T PRK08303 2 MMKPLRGKVALVAGATRGA---GRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CCCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9998799989990887589---9999999998799899982
No 446
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=70.03 E-value=7.9 Score=18.29 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=17.8
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH
Q ss_conf 566732530444324565433344331144781489863043222102
Q gi|254781097|r 154 LLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS 201 (369)
Q Consensus 154 ~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln 201 (369)
+.+.+.+.| |.-..|.- ....+ ..+++.||..|...+-
T Consensus 80 ~Gd~l~v~G-PlGngF~~--------~~~~g-~~~llVgGGiGiaPl~ 117 (263)
T PRK08221 80 EGDKVFLRG-PYGNGFPV--------DTYKG-KELIVVAGGTGVAPVK 117 (263)
T ss_pred CCCEEEEEE-CCCCCCCC--------CCCCC-CEEEEECCCCCCCCHH
T ss_conf 989999970-14897056--------41489-3399982663222369
No 447
>TIGR00861 MIP MIP family channel proteins; InterPro: IPR012269 Aquaporins are water channels, present in both higher and lower organisms, that belong to the major intrinsic protein family. Most aquaporins are highly selective for water, though some also facilitate the movement of small uncharged molecules such as glycerol . In higher eukaryotes these proteins play diverse roles in the maintenance of water homeostasis, indicating that membrane water permeability can be regulated independently of solute permeability. In microorganisms however, many of which do not contain aquaporins, they are not appeart to play such a broad role. Instead, they assist specific microbial lifestyles within the environment, eg htey confer protection against freeze-thaw stress and may help maintain water permeability at low temperatures . The regulation of aquaporins is complex, including transcriptional, post-translational, protein-trafficking and channel-gating mechanisms that are frequently distinct for each family member. Structural studies show that aquaporins are present in the membrane as tetramers, though each monomer contains its own channel , , . The monomer has an overall "hourglass" structure made up of three structural elements: an external vestibule, an internal vestibule, and an extended pore which connects the two vestibules. Substrate selectivity is conferred by two mechanisms. Firstly, the diameter of the pore physically limits the size of molecules that can pass through the channel. Secondly, specific amino acids within the molecule regulate the preference for hydrophobic or hydrophilic substrates.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=69.91 E-value=2.6 Score=21.63 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=18.3
Q ss_pred CCC--CHHHHHHHHHHHHHHHHCCC
Q ss_conf 788--52562079999999996598
Q gi|254781097|r 11 AGG--TGGHVFPAVALSHELKNRGY 33 (369)
Q Consensus 11 ~gG--TGGHi~palala~~L~~~g~ 33 (369)
.|| +|||++||.+|+=.+-+|=+
T Consensus 68 ~gg~iSGaH~NPAVT~al~~~~~~p 92 (258)
T TIGR00861 68 VGGKISGAHLNPAVTIALLLGRRFP 92 (258)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 4305674121278999999862477
No 448
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=69.87 E-value=8 Score=18.26 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=14.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEEECC
Q ss_conf 4898630432221023334454432320--2466067762025
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEM--QRKRLVIMQQVRE 227 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~--~~~~~~v~~~~g~ 227 (369)
.++|-||| |-..+-. .++.+.+. ....+.+++....
T Consensus 107 lvliagG~-GItP~~s----~l~~~~~~~~~~~~v~l~~~~r~ 144 (234)
T cd06183 107 IGMIAGGT-GITPMLQ----LIRAILKDPEDKTKISLLYANRT 144 (234)
T ss_pred EEEEECCC-CHHHHHH----HHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99997460-5628999----99999867887873899993387
No 449
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=69.83 E-value=8 Score=18.26 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=68.9
Q ss_pred EEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEEECHHH---HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHH-HHCCCC
Q ss_conf 999878852-5620799999999965983999957237---67624446875168752565653312332111-000121
Q gi|254781097|r 7 ILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRRA---RSFITDFPADSIYEIVSSQVRFSNPFVFWNSL-VILWKA 81 (369)
Q Consensus 7 ili~~gGTG-GHi~palala~~L~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 81 (369)
.+++.||.. |=..+=.|+++.-...|.||+-+..+.. ...+.+......-.+...+ -..+..-+.. |+....
T Consensus 3 giLTSGGDAPGMNaAIRavvr~A~~~g~EVyG~~~GY~GLi~g~i~~l~~~~V~~Ii~~G---GT~L~tAR~~EFK~~ev 79 (302)
T TIGR02482 3 GILTSGGDAPGMNAAIRAVVRTAIYQGIEVYGIRRGYKGLINGKIVPLKSKAVSGIISKG---GTILGTARCPEFKTEEV 79 (302)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCCCCCHHCCCCCC---CCEEECCCCCCCCCHHH
T ss_conf 675178887025689999999999819706898735421304413424664400100158---83331147854568789
Q ss_pred CHHHHHHHHHCCCCEEEE---CCCCCCHHHHHHHHHCCCCCEEECCCCCCHHH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 101355542034442431---26532102478886234110122153200156-77889999987413432222
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVG---FGGYHSISPLLAGMILRIPSMVHEQNVIMGKA-NRLLSWGVQIIARGLVSSQK 151 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~---tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~-nk~l~~~a~~v~~~~~~~~~ 151 (369)
-.++...|+++-.|..|= -|+|.-. ....+.-++|+| .+||-- |.+. ++| ++.+|+...+
T Consensus 80 R~kA~~nLK~~GI~~LVViGGDGSy~GA--~~L~~~gg~~~i-----GlPGTIDNDI~--~TD-yTIGfDTALN 143 (302)
T TIGR02482 80 REKAVENLKKLGIEALVVIGGDGSYTGA--QKLYEEGGIPVI-----GLPGTIDNDIQ--GTD-YTIGFDTALN 143 (302)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHH--HHHHHHCCCCEE-----EECCCCCCCCC--CCC-HHHHHHHHHH
T ss_conf 9999999887488668998684406889--999971798478-----74585025666--432-2556666743
No 450
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.78 E-value=8 Score=18.25 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 876999878-8525620799999999965983999957
Q gi|254781097|r 4 NNVILLVAG-GTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~g-GTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
.|+|+|.|- +| +++.++.|.++|.+|....+
T Consensus 9 gk~v~v~GlG~s------G~s~a~~L~~~G~~V~~~D~ 40 (457)
T PRK01390 9 GKTVALFGLGGS------GLATARALKAGGAEVIAWDD 40 (457)
T ss_pred CCEEEEEEECHH------HHHHHHHHHHCCCEEEEEEC
T ss_conf 998999943699------99999999978997999939
No 451
>PRK06101 short chain dehydrogenase; Provisional
Probab=69.71 E-value=8.1 Score=18.24 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=24.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+|+|+||+ +|= +.+++++|.++|..|...+
T Consensus 2 ktvlITGas-sGI---G~a~A~~la~~G~~Vi~~~ 32 (241)
T PRK06101 2 TSVLITGAT-SGI---GKQLALDYAKAGWKVIACG 32 (241)
T ss_pred CEEEEECCC-HHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 989992240-499---9999999998799899998
No 452
>PRK06196 oxidoreductase; Provisional
Probab=69.61 E-value=8.1 Score=18.23 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=24.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 769998788525620799999999965983999957
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
-|++|.+|||.|= +++.+++|.++|..|++.+-
T Consensus 26 GK~~vITGa~sGI---G~~tA~~La~~Ga~Vil~~R 58 (316)
T PRK06196 26 GKTAIVTGGYSGL---GLETTRALAQAGAHVVVPAR 58 (316)
T ss_pred CCEEEECCCCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 9989991799679---99999999978998999949
No 453
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=69.47 E-value=5.1 Score=19.61 Aligned_cols=43 Identities=23% Similarity=0.126 Sum_probs=19.2
Q ss_pred CCCEEEECCCCCCHHHH-HHHHHC--CCCCEEECCCCCCHH-HHHHHHHH
Q ss_conf 44424312653210247-888623--411012215320015-67788999
Q gi|254781097|r 93 KPNVVVGFGGYHSISPL-LAGMIL--RIPSMVHEQNVIMGK-ANRLLSWG 138 (369)
Q Consensus 93 kPDvVi~tGGy~s~P~~-iaA~~l--~iP~vihEqN~v~G~-~nk~l~~~ 138 (369)
|-+|.|=|||=-..=-+ -+|+.+ +.+-... + .+|. ++|+-+..
T Consensus 36 k~~v~vVvGGG~~AR~YI~~aR~lnPG~~E~~l--D-~iGI~~TRLNA~L 82 (232)
T TIGR02076 36 KHKVGVVVGGGKTAREYIGVARELNPGASETFL--D-EIGIDATRLNAML 82 (232)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHHHHHH
T ss_conf 468998878876588999999860888880245--6-7779999999999
No 454
>PRK05867 short chain dehydrogenase; Provisional
Probab=69.46 E-value=8.1 Score=18.20 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=22.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
|+++|++ |++|= +.++++.|.+.|.+|.+..
T Consensus 10 KvalVTG-as~GI---G~aiA~~la~~Ga~V~i~~ 40 (253)
T PRK05867 10 KRALITG-ASTGI---GKRVALAYVEAGAQVAIAA 40 (253)
T ss_pred CEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 9899979-56599---9999999998699999997
No 455
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=69.33 E-value=8.2 Score=18.19 Aligned_cols=26 Identities=4% Similarity=0.235 Sum_probs=14.8
Q ss_pred HCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 0044899725420233345529604875
Q gi|254781097|r 258 VEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 258 ~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
...|++|..+=.-.+ +.-.|+|.+-+
T Consensus 357 ~~pDlliG~~~~~~i--a~klgiP~~~~ 382 (415)
T cd01977 357 LKPDIILTGPRVGEL--VKKLHVPYVNI 382 (415)
T ss_pred CCCCEEEECCCCCEE--EEECCCCEEEE
T ss_conf 699999965874411--02248987980
No 456
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=68.87 E-value=7.1 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 852562079999999996598399995723
Q gi|254781097|r 13 GTGGHVFPAVALSHELKNRGYAVYLITDRR 42 (369)
Q Consensus 13 GTGGHi~palala~~L~~~g~~v~~~~~~~ 42 (369)
+...|-.-...++..|+..|+++...+...
T Consensus 8 ~~d~h~~g~~~v~~~l~~~g~~v~~lg~~~ 37 (125)
T cd02065 8 GGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 886467889999999997899899899988
No 457
>PRK06988 putative formyltransferase; Provisional
Probab=68.78 E-value=8.4 Score=18.11 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHC-C
Q ss_conf 998876999878852562079999999996598399995723767624446875168752565653312332111000-1
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVIL-W 79 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 79 (369)
|. .||++.| |... |...-+.|.+.||+|..+..... .+... +...++.. +-.-..+..+ .
T Consensus 1 m~--~rivf~G--tp~f---av~~L~~L~~~~~~v~~VvTqpD------~p~~~---~~~~~Vk~---~A~~~~ipv~~p 61 (313)
T PRK06988 1 MK--PRAVVFA--YHNV---GVRCLQVLLARGVDVALVVTHED------NPTEN---IWFGSVAQ---VAAEHGIPVITP 61 (313)
T ss_pred CC--CEEEEEC--CCHH---HHHHHHHHHHCCCCEEEEECCCC------CCCCC---CCCCHHHH---HHHHCCCCEECC
T ss_conf 98--6199979--9889---99999999978996799989989------97668---89982999---999869958778
Q ss_pred CCC--HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 211--013555420344424312653210247888623411
Q gi|254781097|r 80 KAF--IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIP 118 (369)
Q Consensus 80 ~~~--~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP 118 (369)
.++ -+....|+..+||++|..+ | --.+-..++.+|
T Consensus 62 ~~~~~~e~~~~l~~~~~Dl~vv~a-y---g~ilp~~iL~~p 98 (313)
T PRK06988 62 ADPNDPELRAAVAAAAPDFIFSFY-Y---RHMIPVDLLALA 98 (313)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEH-H---HHHCCHHHHHCC
T ss_conf 989999999999853999999951-4---103599998256
No 458
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=68.76 E-value=7.8 Score=18.34 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHH-HCCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCCCCCCCCCH-HHHHCCCEEEECCCCHHH
Q ss_conf 3445443232-0246606776202551677653-2210011113454444514-443004489972542023
Q gi|254781097|r 204 VPKSIALIPE-MQRKRLVIMQQVREDDKEKVQK-QYDELGCKATLACFFKDIE-RYIVEANLLICRSGALTV 272 (369)
Q Consensus 204 v~~~~~~l~~-~~~~~~~v~~~~g~~~~~~~~~-~~~~~~~~~~v~~f~~~m~-~~~~~aDlvIsraG~~Ti 272 (369)
..++++++.+ ...+-..=++..|--+.+-..+ +....+ + |.++-- .||++|||||| =|..-|
T Consensus 217 ~~~Av~rll~k~~LPvVeTfQgAG~vsrele~~TFfGRvG----L--FrNQ~GD~LLk~aDLvIt-IGYdPI 281 (553)
T TIGR02418 217 TTEAVRRLLKKTQLPVVETFQGAGVVSRELEDETFFGRVG----L--FRNQPGDKLLKQADLVIT-IGYDPI 281 (553)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCEEECHHCCCCCCEECCC----C--CCCCCCHHHHHHCCEEEE-ECCCCE
T ss_conf 9999999864606882140200513110024565210011----4--458700257756697898-338850
No 459
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.71 E-value=8.4 Score=18.10 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 87699987885256207999999999659839999572
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
+-|+.+.+||++|= +.+++++|.+.|.+|......
T Consensus 7 ~gKvalVTGas~GI---G~aia~~la~~Ga~Vv~~~~~ 41 (251)
T PRK12481 7 NGKVAIITGCNTGL---GQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECCC
T ss_conf 99989994867689---999999999869999997898
No 460
>PRK06475 salicylate hydroxylase; Provisional
Probab=68.58 E-value=8.5 Score=18.08 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=24.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 7699987885256207999999999659839999
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~ 38 (369)
-.|+|+|||-+ ++++|-.|.++|++|.++
T Consensus 3 ~~VlIVGaGia-----GL~~A~~L~~~G~~v~V~ 31 (400)
T PRK06475 3 GSILIAGAGVA-----GLSAALELAARGWAVTII 31 (400)
T ss_pred CCEEEECCCHH-----HHHHHHHHHHCCCCEEEE
T ss_conf 97999895889-----999999999789999999
No 461
>KOG0029 consensus
Probab=68.44 E-value=8.5 Score=18.06 Aligned_cols=32 Identities=13% Similarity=0.502 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8876999878852562079999999996598399995
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
++++|+|.|+|-. +++-|+.|.+.|++|.+.-
T Consensus 14 ~~~~VIVIGAGia-----GLsAArqL~~~G~~V~VLE 45 (501)
T KOG0029 14 KKKKVIVIGAGLA-----GLSAARQLQDFGFDVLVLE 45 (501)
T ss_pred CCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEEE
T ss_conf 8883899898578-----9999999997598259997
No 462
>PRK08267 short chain dehydrogenase; Provisional
Probab=68.39 E-value=8.6 Score=18.06 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=24.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 769998788525620799999999965983999957237
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|+++|+||++ |= +.++++.|.++|+.|... ++..
T Consensus 2 K~vlITGass-GI---G~a~A~~~a~~G~~V~~~-~r~~ 35 (258)
T PRK08267 2 KSIFITGAAS-GI---GRATARLFAARGWRVGAY-DINE 35 (258)
T ss_pred CEEEEECCCC-HH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 9899907226-89---999999999879999999-8889
No 463
>PRK11761 cysM cysteine synthase B; Provisional
Probab=68.19 E-value=8.6 Score=18.03 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 3444--243126532102478886234110122
Q gi|254781097|r 92 LKPN--VVVGFGGYHSISPLLAGMILRIPSMVH 122 (369)
Q Consensus 92 ~kPD--vVi~tGGy~s~P~~iaA~~l~iP~vih 122 (369)
.+|. +|-++.|-+......+|..+++|+++.
T Consensus 60 l~~g~~vveaSSGN~g~alA~~a~~~G~~~~iv 92 (296)
T PRK11761 60 IKPGDTLIEATSGNTGIALAMAAAIKGYRMKLI 92 (296)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 899987999378867999999999819747996
No 464
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=68.13 E-value=8.7 Score=18.02 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCCCCEEEEECC--CC----HHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 998876999878--85----25620799999999965983999957237
Q gi|254781097|r 1 MSENNVILLVAG--GT----GGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~~~~~ili~~g--GT----GGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|-++++.||++- || .+.+.|+....++|+++|+.+.+.|+|..
T Consensus 1 ~~~M~~~LI~tDlDGTLL~~~~~~~~~~~ai~~l~~~Gi~vviaTGR~~ 49 (275)
T PRK00192 1 MIDMSKLLVFTDLDGTLLDHTYDWEPAKPTLKALKEKGIPVIPCTSKTA 49 (275)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 9888846999948577848999836899999999978999999689889
No 465
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=67.98 E-value=8.7 Score=18.00 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 4898630432221023334454432320-246606776202
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPEM-QRKRLVIMQQVR 226 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~~-~~~~~~v~~~~g 226 (369)
.|+|-||+ |-..+-. .++.+... ....+.+++.+.
T Consensus 105 ~vlIagG~-GItP~~s----~l~~l~~~~~~~~v~l~yg~r 140 (228)
T cd06209 105 LLMLAGGT-GLAPFLS----MLDVLAEDGSAHPVHLVYGVT 140 (228)
T ss_pred EEEEECCC-CCCHHHH----HHHHHHHCCCCCCEEEEEECC
T ss_conf 89996687-7342999----999999759998389998249
No 466
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.95 E-value=8.4 Score=18.12 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=17.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 876999878852562079999999996598399995
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+++|+++.-|--||-..+.-+++.|+.-|+||...+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g 47 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG 47 (143)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf 866999536765443131999999985793798158
No 467
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=67.92 E-value=8.7 Score=17.99 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=25.9
Q ss_pred CCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 998--8769998788525620799999999965983999957
Q gi|254781097|r 1 MSE--NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 1 M~~--~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++ |.+|+|+| ||.|= +++.+++|.++|..|++.+-
T Consensus 1 ~~~~~~~TvvITG-ansGI---G~eta~~La~~ga~Vil~~R 38 (322)
T PRK07453 1 MSQDAKGTVLITG-ASSGV---GLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCCCCCCEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEEEC
T ss_conf 9988998399968-88689---99999999978998999979
No 468
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=67.92 E-value=8.7 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=14.9
Q ss_pred CCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 044899725420233345529604875
Q gi|254781097|r 259 EANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 259 ~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
..|++|..+-...++ ...|+|.+-+
T Consensus 355 ~pDllig~s~~~~~a--~~lgiP~~d~ 379 (406)
T cd01967 355 KPDLILSGIKEKYVA--QKLGIPFLDL 379 (406)
T ss_pred CCCEEEECCCCHHHH--HHCCCCEEEE
T ss_conf 999999787434889--9829988996
No 469
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=67.84 E-value=8.8 Score=17.98 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 69998788525620799999999965983999957
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|||++| ||| .+ +..++++|.++||+|..+..
T Consensus 2 riLVTG-gtG-fi--G~~l~~~L~~~G~~V~~l~r 32 (328)
T TIGR03466 2 KVLVTG-ATG-FV--GSAVVRLLLERGEEVRVLVR 32 (328)
T ss_pred EEEEEC-CCC-HH--HHHHHHHHHHCCCEEEEEEC
T ss_conf 499986-777-99--99999999978498999989
No 470
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=67.82 E-value=8.8 Score=17.98 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 998-87699987885256207999999999659839999572376
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~ 44 (369)
|+. +.|+++.+|-|+|= +.|++++|.+.|+.|... .++.+
T Consensus 1 m~~~~~kv~lITGASSGi---G~A~A~~l~~~G~~vvl~-aRR~d 41 (246)
T COG4221 1 MTTLKGKVALITGASSGI---GEATARALAEAGAKVVLA-ARREE 41 (246)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEE-ECCHH
T ss_conf 987778689994686568---899999999789969998-63688
No 471
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.80 E-value=8.8 Score=17.97 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=23.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
.|+++.+|+++|= +.++++++.++|..|.+..
T Consensus 8 ~KvVvITGASsGI---Gra~A~~fA~~Ga~Vvl~a 39 (338)
T PRK07109 8 RQVVVITGASAGV---GRATARAFARRGAKVVLLA 39 (338)
T ss_pred CCEEEEECCCCHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 8989994843499---9999999998799899998
No 472
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=67.67 E-value=6.7 Score=18.80 Aligned_cols=30 Identities=40% Similarity=0.688 Sum_probs=22.0
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 987885256207999999999659839999572
Q gi|254781097|r 9 LVAGGTGGHVFPAVALSHELKNRGYAVYLITDR 41 (369)
Q Consensus 9 i~~gGTGGHi~palala~~L~~~g~~v~~~~~~ 41 (369)
+.+|||| -+ +.+|...|.+.||+|++++-.
T Consensus 2 liTGgTG-lI--G~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 2 LITGGTG-LI--GRALTARLRKGGHQVTILTRR 31 (297)
T ss_pred EEECCCC-CH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 5735665-01--689999998489869999747
No 473
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=67.60 E-value=8.7 Score=18.00 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 14898630432221023334454432320246606776202551
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDD 229 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~~~ 229 (369)
+.+|+.||| |-..+ ...+..+.+.....+.++|.+....
T Consensus 112 ~~llla~G~-GITP~----lSml~~~~~~~~~~v~l~h~~R~~~ 150 (266)
T COG1018 112 KLLLLAGGI-GITPF----LSMLRTLLDRGPADVVLVHAARTPA 150 (266)
T ss_pred CEEEEECCC-CHHHH----HHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 489996353-68899----9999999973888789998048757
No 474
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=67.33 E-value=9 Score=17.91 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHCCCCCEE
Q ss_conf 135554203444243126532102-47888623411012
Q gi|254781097|r 84 ASLRLIKKLKPNVVVGFGGYHSIS-PLLAGMILRIPSMV 121 (369)
Q Consensus 84 ~~~~ii~~~kPDvVi~tGGy~s~P-~~iaA~~l~iP~vi 121 (369)
+.....++.+.|+||+.||-...- +-.+|+.+++|++.
T Consensus 79 ~l~~~~~~~~~d~vi~~GgG~~~D~~k~~a~~~~~p~i~ 117 (351)
T PRK00843 79 KVEEKARDSGAGFLIGVGGGSSIDVAKLASTRLGIPFIS 117 (351)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999845999899956516848999999982999899
No 475
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=67.25 E-value=9 Score=17.90 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=16.9
Q ss_pred HCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 0044899725420233345529604875
Q gi|254781097|r 258 VEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 258 ~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
...|++|+.+-+--+ +.-.|+|.+=+
T Consensus 355 ~~~Dliig~s~~~~~--a~rlGiP~~~~ 380 (410)
T cd01968 355 KKADLLVAGGKERYL--ALKLGIPFCDI 380 (410)
T ss_pred CCCCEEEECCCHHHH--HHHHCCCEEEE
T ss_conf 699999957732488--99808988980
No 476
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=67.06 E-value=7.6 Score=18.40 Aligned_cols=10 Identities=10% Similarity=-0.037 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q ss_conf 1113454444
Q gi|254781097|r 242 CKATLACFFK 251 (369)
Q Consensus 242 ~~~~v~~f~~ 251 (369)
++.+++.|++
T Consensus 136 P~AwliNytN 145 (183)
T pfam02056 136 PDAWVLNYTN 145 (183)
T ss_pred CCCEEEECCC
T ss_conf 9838998278
No 477
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=66.95 E-value=9.1 Score=17.86 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=27.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 9998788525620799999999965983999957237
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|-++|+ ||-.+-...||+++.++|..|.+.|..++
T Consensus 2 Is~VGa--GGKTS~m~~LA~e~~~~G~~VlvTTTT~m 36 (232)
T TIGR03172 2 IAFVGA--GGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred EEEECC--CCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899889--87999999999999876990999889665
No 478
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=66.82 E-value=9.2 Score=17.85 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=6.0
Q ss_pred ECCCC-HHHHHHHHHHC
Q ss_conf 02551-67765322100
Q gi|254781097|r 225 VREDD-KEKVQKQYDEL 240 (369)
Q Consensus 225 ~g~~~-~~~~~~~~~~~ 240 (369)
||... .+.+++.+.+.
T Consensus 210 CGP~~~m~a~~~~l~~~ 226 (335)
T PRK10684 210 CGPAPYMDWVEQEVKAL 226 (335)
T ss_pred ECCHHHHHHHHHHHHHC
T ss_conf 79899999999999984
No 479
>KOG1430 consensus
Probab=66.46 E-value=9.3 Score=17.80 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEE
Q ss_conf 99887699987885256207999999999659--839999
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRG--YAVYLI 38 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g--~~v~~~ 38 (369)
|+++.+++|+||+ |++ +..+.+.|.+++ .++.++
T Consensus 1 ~~~~~~vlVtGG~--Gfl--G~hlv~~L~~~~~~~~irv~ 36 (361)
T KOG1430 1 MEKKLSVLVTGGS--GFL--GQHLVQALLENELKLEIRVV 36 (361)
T ss_pred CCCCCEEEEECCC--CHH--HHHHHHHHHHCCCCCEEEEE
T ss_conf 9967779998983--378--99999999845666179995
No 480
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=66.33 E-value=7.6 Score=18.42 Aligned_cols=42 Identities=33% Similarity=0.643 Sum_probs=30.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEE--EEE--CHHHHHHHCCC
Q ss_conf 6999878852562079999999996598399--995--72376762444
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVY--LIT--DRRARSFITDF 50 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~--~~~--~~~~~~~~~~~ 50 (369)
||-++|||+||= +-||-+.|.+.||.|. +.+ ..+.+.+....
T Consensus 1 rvALVTGg~GGI---GtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~ 46 (244)
T TIGR01829 1 RVALVTGGTGGI---GTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQ 46 (244)
T ss_pred CEEEEECCCCCH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 947885787744---6899999987598898817898258999999862
No 481
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=66.26 E-value=9.4 Score=17.77 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHH
Q ss_conf 998876999878852-5620799999999965983999957237-6762
Q gi|254781097|r 1 MSENNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRRA-RSFI 47 (369)
Q Consensus 1 M~~~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~~~~~~-~~~~ 47 (369)
||+||--++++||-. |=...-.++.+++.+.++++.+.+-+.+ +.++
T Consensus 1 ms~kriaIlTsGGd~PGlNavIr~vV~~~~~~~~~~eV~G~~~Gy~GLl 49 (403)
T PRK06555 1 MAKKKVAMLTAGGLAPCLSSAVGGLIERYTDVAPEIEIIAYKSGYQGLL 49 (403)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHC
T ss_conf 9988899989877628899999999999986179849999872148756
No 482
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=66.22 E-value=9.4 Score=17.77 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=15.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 14898630432221023334454432320246606776202
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVR 226 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g 226 (369)
..|||-||+ |-..+-..+...+..- .....+.+++++.
T Consensus 152 ~lvlIAgGt-GIaPl~Sml~~~l~~~--~~~r~v~l~ygaR 189 (283)
T cd06188 152 EMVFIGGGA-GMAPLRSHIFHLLKTL--KSKRKISFWYGAR 189 (283)
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHC--CCCCCEEEEEEEC
T ss_conf 528998356-7446999999999826--9997289999708
No 483
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445 This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=65.94 E-value=9.5 Score=17.73 Aligned_cols=114 Identities=20% Similarity=0.291 Sum_probs=49.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 88769998788525620799999999965983999957237676244468751687525656533123321110001211
Q gi|254781097|r 3 ENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 3 ~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
++|||+|+ |.|| |=+-=|.--|.+.|-+|.=.. +.+...-..+++....-...+.. .+...+-=++-.
T Consensus 3 ~gKkVl~T-GHTG---FKGSWL~lWL~~lGA~V~GYS-------L~P~t~PnlFe~l~l~~~~~~~W-yf~~~~gDIrD~ 70 (361)
T TIGR02622 3 QGKKVLIT-GHTG---FKGSWLSLWLLELGAEVAGYS-------LDPPTSPNLFELLNLAKKIKDSW-YFSSIFGDIRDA 70 (361)
T ss_pred CCCEEEEE-CCCC---CCHHHHHHHHHHCCCEEEEEE-------CCCCCCCCHHHHHHHHHHHHCCE-EEEEEEECCCCH
T ss_conf 68678984-5786---425589999984796798971-------68878840555752542432350-554233032327
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHH
Q ss_conf 0135554203444243126532102478886234110122153200156778
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRL 134 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~ 134 (369)
.+..+.+++.|||+|+-+ ++=|.+ -+...=|+=-.|-| |+|.+|=+
T Consensus 71 ~~L~~~~~~~~PeIvFHl---AAQPLV--r~SY~~P~~Tf~TN-VmGT~~lL 116 (361)
T TIGR02622 71 AKLEKAIAEFKPEIVFHL---AAQPLV--RKSYADPLETFETN-VMGTVNLL 116 (361)
T ss_pred HHHHHHHHHCCCCEEEHH---HHHHHH--HHHHHCHHHHEEEH-HHHHHHHH
T ss_conf 899999997289898333---542788--98673202022200-32225778
No 484
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=65.86 E-value=9.6 Score=17.72 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6999878852562079999999996598399995
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~ 39 (369)
+|||++|+ +|= +.+++++|.++|.+|.+..
T Consensus 2 nVlITGas-~GI---G~aiA~~la~~Ga~V~i~~ 31 (259)
T PRK08340 2 NVLVTASS-RGI---GFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEECCC-CHH---HHHHHHHHHHCCCEEEEEE
T ss_conf 89997587-789---9999999998799999997
No 485
>PRK07074 short chain dehydrogenase; Provisional
Probab=65.62 E-value=9.7 Score=17.69 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 8769998788525620799999999965983999957237
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
+|.++|++ |++|= +.+++++|.+.|..|.+. ++..
T Consensus 2 nKvalITG-gs~GI---G~aia~~la~~Ga~V~~~-~r~~ 36 (256)
T PRK07074 2 SRTALVTG-AAGGI---GQALARRFLAAGDRVLAL-DIDR 36 (256)
T ss_pred CCEEEEEC-CCCHH---HHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 98899988-46899---999999999869999999-7988
No 486
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=65.55 E-value=6.7 Score=18.80 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCCEEEEEECCCC
Q ss_conf 489863043222102333445443232-0246606776202551
Q gi|254781097|r 187 HLLVFGGSQGAKVFSDIVPKSIALIPE-MQRKRLVIMQQVREDD 229 (369)
Q Consensus 187 ~ILv~GGS~Ga~~ln~~v~~~~~~l~~-~~~~~~~v~~~~g~~~ 229 (369)
.|||-||| |-..+--.+...+....+ .....+.+++.+...+
T Consensus 109 vlliaGG~-GItp~ls~l~~l~~~~~~~~~~~~i~lvw~~R~~~ 151 (210)
T cd06186 109 VLLVAGGS-GITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE 151 (210)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHH
T ss_conf 89991375-70368999999986002468884199999979999
No 487
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=65.49 E-value=9.7 Score=17.67 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHCCCCCCCCCCCCCCHHHHHCCCEE
Q ss_conf 10011113454444514443004489
Q gi|254781097|r 238 DELGCKATLACFFKDIERYIVEANLL 263 (369)
Q Consensus 238 ~~~~~~~~v~~f~~~m~~~~~~aDlv 263 (369)
.+...|.++..|...+++ |..-.++
T Consensus 209 ~qlnEnak~~A~~~~~pE-~nHneI~ 233 (328)
T PRK08674 209 NQINENAKYPAFYNILPE-LNHNEIE 233 (328)
T ss_pred HHHHHHHCCCCCCCCCCC-CCCCCEE
T ss_conf 999887457623256631-2565000
No 488
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=65.41 E-value=9.7 Score=17.66 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=46.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 769998788525620799999999965983999957237--676244468751687525656533123321110001211
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA--RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
++++|.|+|.= +..+++.|.+.||+|..+-.... +.++.+. ...+.+..... + ...|
T Consensus 1 m~iiIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--~~~~~v~gd~t---~----~~~L------- 59 (225)
T COG0569 1 MKIIIIGAGRV-----GRSVARELSEEGHNVVLIDRDEERVEEFLADE--LDTHVVIGDAT---D----EDVL------- 59 (225)
T ss_pred CEEEEECCCHH-----HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC--CCEEEEEECCC---C----HHHH-------
T ss_conf 98999898578-----89999999878990899976889999863200--04499992688---9----8999-------
Q ss_pred HHHHHHHHHCCCCEEE-ECCCCC--CHHHHHHHHHCCCCCEE
Q ss_conf 0135554203444243-126532--10247888623411012
Q gi|254781097|r 83 IASLRLIKKLKPNVVV-GFGGYH--SISPLLAGMILRIPSMV 121 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi-~tGGy~--s~P~~iaA~~l~iP~vi 121 (369)
+-.--.+-|+++ .||... ++...+|.+.+++|.++
T Consensus 60 ----~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 60 ----EEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred ----HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf ----86798638999998088679999999999873998499
No 489
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=65.41 E-value=8.6 Score=18.05 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.3
Q ss_pred CEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 76999878852-56207999999999659839999
Q gi|254781097|r 5 NVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 5 ~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
|.|+|++-.+| |-.+-+++|..+|++||..|.-.
T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~F 36 (432)
T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALADAGYDVQPA 36 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 62899778999989999999999999784963766
No 490
>PRK08233 hypothetical protein; Provisional
Probab=65.39 E-value=6.4 Score=18.95 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCH-HHHHHHHHHHHHH
Q ss_conf 8876999878852-5620799999999
Q gi|254781097|r 3 ENNVILLVAGGTG-GHVFPAVALSHEL 28 (369)
Q Consensus 3 ~~~~ili~~gGTG-GHi~palala~~L 28 (369)
+|..|+-.||||| |-.+-|.+|.++|
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998899996888678999999999974
No 491
>PRK04965 nitric oxide reductase; Provisional
Probab=65.33 E-value=8.5 Score=18.08 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEECHH
Q ss_conf 9988769998788525620799999999965983--99995723
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYA--VYLITDRR 42 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~--v~~~~~~~ 42 (369)
||+ +|+|.++|-+| .+.+++|++.+++ +++++...
T Consensus 1 M~~--~IVIIG~G~AG-----~~aa~~lR~~d~~~~Itvi~~e~ 37 (378)
T PRK04965 1 MSN--GIVIIGSGFAA-----RQLVKNIRKQDAHIPITLITADS 37 (378)
T ss_pred CCC--CEEEECCCHHH-----HHHHHHHHCCCCCCCEEEEECCC
T ss_conf 989--99999882999-----99999997119498699998999
No 492
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=65.31 E-value=9.8 Score=17.65 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=26.5
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEE-----EEHHCCCHHHHHHHHHHHH
Q ss_conf 345529604875335524898999899999-8898899-----8000199899999999986
Q gi|254781097|r 274 EIAVIGRPAILVPYPHSVDQDQLHNAYYLQ-EGGGAKV-----ITENFLSPERLAEELCSAM 329 (369)
Q Consensus 274 E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~-~~G~a~~-----i~~~~~~~~~l~~~i~~ll 329 (369)
+-...|++++. | +-..|=-.-+++|. +.|.-++ +.+ .++++.+.+....
T Consensus 304 ~~aL~GKra~V--F--GD~tHavg~T~~L~~ElG~~vv~AGTY~k~---~a~wvr~~~~gY~ 358 (562)
T TIGR01278 304 QSALTGKRAFV--F--GDATHAVGVTKLLRDELGIHVVGAGTYCKE---QADWVREQVAGYV 358 (562)
T ss_pred HHHCCCCCEEE--E--CCCHHHHHHHHHHHHHCCCEEEEECCCCHH---HHHHHHHHHHHCC
T ss_conf 30115884698--6--784489999999886379179872479866---8999999983038
No 493
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=65.22 E-value=9.8 Score=17.64 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9988769998788525620799999999965983999
Q gi|254781097|r 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYL 37 (369)
Q Consensus 1 M~~~~~ili~~gGTGGHi~palala~~L~~~g~~v~~ 37 (369)
|++...+.++|-..-|=+ -++...|-++|-++.-
T Consensus 2 ~~~~~IL~isCPD~~GIV---A~VT~~L~~~g~NI~e 35 (285)
T PRK06027 2 MMQRYILLLSCPDRPGIV---AAVSNFLYEHGGNIID 35 (285)
T ss_pred CCCEEEEEEECCCCCCHH---HHHHHHHHHCCCCEEE
T ss_conf 744599999899999609---9999999968999937
No 494
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=65.20 E-value=8.1 Score=18.22 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=15.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 148986304322210233344544323202466067762025
Q gi|254781097|r 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 186 ~~ILv~GGS~Ga~~ln~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
..++|-||+ |-..+-..+...+ .......+.+++.+..
T Consensus 104 ~~lliAgG~-GItP~~s~l~~~~---~~~~~~~v~l~yg~r~ 141 (231)
T cd06191 104 RYLLVAAGS-GITPLMAMIRATL---QTAPESDFTLIHSART 141 (231)
T ss_pred CEEEEECCC-CCCHHHHHHHHHH---HHCCCCCEEEEEECCC
T ss_conf 799995275-3273899999999---8578985899982699
No 495
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=65.12 E-value=9.9 Score=17.62 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=25.5
Q ss_pred CC-CCCEEEEECCCC-HHHHHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 99-887699987885-25620799999999965983999957237
Q gi|254781097|r 1 MS-ENNVILLVAGGT-GGHVFPAVALSHELKNRGYAVYLITDRRA 43 (369)
Q Consensus 1 M~-~~~~ili~~gGT-GGHi~palala~~L~~~g~~v~~~~~~~~ 43 (369)
|. +|+||.|.|.|. |+. ++-.|.+.|++|.+++....
T Consensus 1 M~~~~~kI~IiGaGAiG~~------~a~~L~~aG~~V~li~r~~~ 39 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGF------YGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CCCCCCEEEEECCCHHHHH------HHHHHHHCCCCEEEEECCHH
T ss_conf 9999888999991499999------99999966995699967559
No 496
>PRK05480 uridine kinase; Provisional
Probab=65.08 E-value=8.7 Score=18.01 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 998876999878852-56207999999999659839999
Q gi|254781097|r 1 MSENNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 1 M~~~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
|.+++-|+-.+||+| |-.+=|..|+++|... .+.++
T Consensus 2 ~~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~--~v~vi 38 (209)
T PRK05480 2 MMKQPIIIGIAGGSGSGKTTVASTIYEELGDE--SIAVI 38 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEE
T ss_conf 98898899998999778999999999980868--75999
No 497
>PRK06851 hypothetical protein; Provisional
Probab=65.02 E-value=9.9 Score=17.61 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=25.1
Q ss_pred CEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 76999878852-562079999999996598399995
Q gi|254781097|r 5 NVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLIT 39 (369)
Q Consensus 5 ~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~~ 39 (369)
.+|.+.-||.| |--+=...|++++.++|++|.+.-
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~~~~~GydVE~~h 66 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLH 66 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 279999689997789999999999996898379997
No 498
>PTZ00318 NADH dehydrogenase; Provisional
Probab=65.02 E-value=8.5 Score=18.07 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8769998788525620799999999965983999957
Q gi|254781097|r 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITD 40 (369)
Q Consensus 4 ~~~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~ 40 (369)
|++|+|.|||-|| +.+++.|.++..+|.++..
T Consensus 10 KprVVIlGgGfaG-----l~~ak~L~~~~~~VtLVdp 41 (514)
T PTZ00318 10 KPNVVVVGTGWAG-----CYFARHLNPKLANLHVLST 41 (514)
T ss_pred CCEEEEECCCHHH-----HHHHHHHCCCCCCEEEECC
T ss_conf 8858999976999-----9999973868982899999
No 499
>PRK07791 short chain dehydrogenase; Provisional
Probab=65.00 E-value=9.9 Score=17.61 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 998-8769998788525620799999999965983999
Q gi|254781097|r 1 MSE-NNVILLVAGGTGGHVFPAVALSHELKNRGYAVYL 37 (369)
Q Consensus 1 M~~-~~~ili~~gGTGGHi~palala~~L~~~g~~v~~ 37 (369)
|.. +-|+.+.+||++|= +.++++.|.+.|..|.+
T Consensus 1 Mg~L~GKvalVTGas~GI---G~aiA~~lA~~GA~Vvi 35 (285)
T PRK07791 1 MGLLDGRVVIVTGAGGGI---GRAHALAFAAEGARVVV 35 (285)
T ss_pred CCCCCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEE
T ss_conf 998899879992867689---99999999986999999
No 500
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.84 E-value=10 Score=17.59 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCH-HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8876999878852-56207999999999659839999
Q gi|254781097|r 3 ENNVILLVAGGTG-GHVFPAVALSHELKNRGYAVYLI 38 (369)
Q Consensus 3 ~~~~ili~~gGTG-GHi~palala~~L~~~g~~v~~~ 38 (369)
+.|+++|++|++| |= +.+++++|.+.|.+|.+.
T Consensus 5 ~GK~alVTGaa~~~Gi---G~aiA~~la~~GA~V~i~ 38 (262)
T PRK07984 5 SGKRILVTGVASKLSI---AYGIAQAMHREGAELAFT 38 (262)
T ss_pred CCCEEEEECCCCCCHH---HHHHHHHHHHCCCEEEEE
T ss_conf 9987999899997259---999999999879999998
Done!