HHsearch alignment for GI: 254781097 and conserved domain: pfam02684
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=99.86 E-value=3.6e-19 Score=153.52 Aligned_cols=337 Identities=14% Similarity=0.118 Sum_probs=207.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (369)
T Consensus 1 Ifi~aGE~SGD~~-ga~Li~~Lk~~~p~i~~~GvGG~~M~~~G~--~~l~d~~~--lsvmG~~evl~~l~~l~~~~~~~~ 75 (373)
T pfam02684 1 IFLSAGEASGDIL-GGELIQNLKEHYPNLRFIGVGGPKMEAEGF--ESLANMEE--ISVMGFIEVLGRLFKLLKIYQKVV 75 (373)
T ss_pred CEEEECCCCHHHH-HHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCHHH--HHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9899358518999-999999998309894899988089997799--53477278--414019999989999999999999
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHH--C--CCCCEEECC-CC---CCHHHHHHHHHHHHHHHCCCCCCCCCCC--CC
Q ss_conf 5542034442431265321024788862--3--411012215-32---0015677889999987413432222355--66
Q gi|254781097|r 87 RLIKKLKPNVVVGFGGYHSISPLLAGMI--L--RIPSMVHEQ-NV---IMGKANRLLSWGVQIIARGLVSSQKKVL--LR 156 (369)
Q Consensus 87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~~--l--~iP~vihEq-N~---v~G~~nk~l~~~a~~v~~~~~~~~~~~~--~~ 156 (369)
T Consensus 76 ~~i~~~~PD~vIlI-D~pgFNlrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~-k~i~~~~D~ll~IfPFE~~~y~~~gv 153 (373)
T pfam02684 76 KNILKKKPDTLILI-DAPDFNLRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRA-KIIAKYTDLLLAILPFEKGFFQKFGL 153 (373)
T ss_pred HHHHHCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEECHHHH-HHHHHHHHHHCCCCCCCHHHHHHHCC
T ss_conf 98742699889997-17615599999999719998789996884221271589-99999998731289887899986099
Q ss_pred CCEEEECCCCHHHHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCHHHH---HHHHHHHHHHHCCCCCEEEEEECCCCH-
Q ss_conf 7325304443245654333--4433114478148986304322210233---344544323202466067762025516-
Q gi|254781097|r 157 KIIVTGNPIRSSLIKMKDI--PYQSSDLDQPFHLLVFGGSQGAKVFSDI---VPKSIALIPEMQRKRLVIMQQVREDDK- 230 (369)
Q Consensus 157 k~~~~G~PvR~~~~~~~~~--~~~~~~~~~~~~ILv~GGS~Ga~~ln~~---v~~~~~~l~~~~~~~~~v~~~~g~~~~- 230 (369)
T Consensus 154 ~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~E-I~~~lPi~l~aa~~l~~~-~~~~~~~ip~~~~~~~ 231 (373)
T pfam02684 154 DCRYVGHPLLDEIKLYKKRASAKELLIDHDEPILALLPGSRKGE-IRRLLPPIQVAAQQLSSQ-FPNLKLLVPLVNKKYE 231 (373)
T ss_pred CEEECCCCHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCHHH-HHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHH
T ss_conf 71575981165401377658999746898775577678886999-999999999999999976-8991899965887899
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 77653221001111345444451444300448997254202333455296048753355248989998999998898899
Q gi|254781097|r 231 EKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKV 310 (369)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~ 310 (369)
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~sd~al~~SGTaTL-E~al~~~P~vV~-Yk~~~l--ty~i~k~lvkv~~isL 307 (373)
T pfam02684 232 EQIEDTLALENCDVSLLEISGERYEAMFAADAALAKSGTATL-EAALAGTPMVVA-YRVKPL--TFFLAKRLVKIDYISL 307 (373)
T ss_pred HHHHHHHHHCCCCCCEEECCCCHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEE-EECCHH--HHHHHHHHHCCCEEEH
T ss_conf 999999986499987898057249999848650121676999-999819998999-957789--9999999983895443
Q ss_pred ------------EEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCHHHHHHHH
Q ss_conf ------------80001998999999999861899999999999852------78327999999
Q gi|254781097|r 311 ------------ITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK------GKPQAVLMLSD 356 (369)
Q Consensus 311 ------------i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~------~~~~aa~~i~~ 356 (369)
T Consensus 308 ~Nii~~k~ivPEllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l~~g~~~~~~~aa~ 371 (373)
T pfam02684 308 PNIILNREIVPEFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLLRFGQCNSDEQAAL 371 (373)
T ss_pred HHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 4886699867356475178999999999996799999999999999999985689998897775