HHsearch alignment for GI: 254781097 and conserved domain: pfam02684

>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=99.86  E-value=3.6e-19  Score=153.52  Aligned_cols=337  Identities=14%  Similarity=0.118  Sum_probs=207.4

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf             99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r    7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL   86 (369)
Q Consensus         7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   86 (369)
T Consensus         1 Ifi~aGE~SGD~~-ga~Li~~Lk~~~p~i~~~GvGG~~M~~~G~--~~l~d~~~--lsvmG~~evl~~l~~l~~~~~~~~   75 (373)
T pfam02684         1 IFLSAGEASGDIL-GGELIQNLKEHYPNLRFIGVGGPKMEAEGF--ESLANMEE--ISVMGFIEVLGRLFKLLKIYQKVV   75 (373)
T ss_pred             CEEEECCCCHHHH-HHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCHHH--HHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9899358518999-999999998309894899988089997799--53477278--414019999989999999999999


Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHH--C--CCCCEEECC-CC---CCHHHHHHHHHHHHHHHCCCCCCCCCCC--CC
Q ss_conf             5542034442431265321024788862--3--411012215-32---0015677889999987413432222355--66
Q gi|254781097|r   87 RLIKKLKPNVVVGFGGYHSISPLLAGMI--L--RIPSMVHEQ-NV---IMGKANRLLSWGVQIIARGLVSSQKKVL--LR  156 (369)
Q Consensus        87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~~--l--~iP~vihEq-N~---v~G~~nk~l~~~a~~v~~~~~~~~~~~~--~~  156 (369)
T Consensus        76 ~~i~~~~PD~vIlI-D~pgFNlrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~-k~i~~~~D~ll~IfPFE~~~y~~~gv  153 (373)
T pfam02684        76 KNILKKKPDTLILI-DAPDFNLRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRA-KIIAKYTDLLLAILPFEKGFFQKFGL  153 (373)
T ss_pred             HHHHHCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEECHHHH-HHHHHHHHHHCCCCCCCHHHHHHHCC
T ss_conf             98742699889997-17615599999999719998789996884221271589-99999998731289887899986099


Q ss_pred             CCEEEECCCCHHHHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCHHHH---HHHHHHHHHHHCCCCCEEEEEECCCCH-
Q ss_conf             7325304443245654333--4433114478148986304322210233---344544323202466067762025516-
Q gi|254781097|r  157 KIIVTGNPIRSSLIKMKDI--PYQSSDLDQPFHLLVFGGSQGAKVFSDI---VPKSIALIPEMQRKRLVIMQQVREDDK-  230 (369)
Q Consensus       157 k~~~~G~PvR~~~~~~~~~--~~~~~~~~~~~~ILv~GGS~Ga~~ln~~---v~~~~~~l~~~~~~~~~v~~~~g~~~~-  230 (369)
T Consensus       154 ~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~E-I~~~lPi~l~aa~~l~~~-~~~~~~~ip~~~~~~~  231 (373)
T pfam02684       154 DCRYVGHPLLDEIKLYKKRASAKELLIDHDEPILALLPGSRKGE-IRRLLPPIQVAAQQLSSQ-FPNLKLLVPLVNKKYE  231 (373)
T ss_pred             CEEECCCCHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCHHH-HHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHH
T ss_conf             71575981165401377658999746898775577678886999-999999999999999976-8991899965887899


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             77653221001111345444451444300448997254202333455296048753355248989998999998898899
Q gi|254781097|r  231 EKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKV  310 (369)
Q Consensus       231 ~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~  310 (369)
T Consensus       232 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~sd~al~~SGTaTL-E~al~~~P~vV~-Yk~~~l--ty~i~k~lvkv~~isL  307 (373)
T pfam02684       232 EQIEDTLALENCDVSLLEISGERYEAMFAADAALAKSGTATL-EAALAGTPMVVA-YRVKPL--TFFLAKRLVKIDYISL  307 (373)
T ss_pred             HHHHHHHHHCCCCCCEEECCCCHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEE-EECCHH--HHHHHHHHHCCCEEEH
T ss_conf             999999986499987898057249999848650121676999-999819998999-957789--9999999983895443


Q ss_pred             ------------EEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCHHHHHHHH
Q ss_conf             ------------80001998999999999861899999999999852------78327999999
Q gi|254781097|r  311 ------------ITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK------GKPQAVLMLSD  356 (369)
Q Consensus       311 ------------i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~------~~~~aa~~i~~  356 (369)
T Consensus       308 ~Nii~~k~ivPEllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l~~g~~~~~~~aa~  371 (373)
T pfam02684       308 PNIILNREIVPEFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLLRFGQCNSDEQAAL  371 (373)
T ss_pred             HHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             4886699867356475178999999999996799999999999999999985689998897775