HHsearch alignment for GI: 254781097 and conserved domain: pfam04007
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=99.61 E-value=1.4e-13 Score=114.54 Aligned_cols=295 Identities=18% Similarity=0.159 Sum_probs=161.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 69998788525620799999999965983999957237-67624446875168752565653312332111000121101
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRA-RSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIA 84 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (369)
T Consensus 2 kIwiDI~-~p~hvhfFk~iI~eL~k~GheV~iTaR~~~~~~~LL~~y~i~~~~i--G~-~g~s~~~Kl~~~---~~R~~~ 74 (335)
T pfam04007 2 KVWIDIT-NAPHVHFFKPIISELEKEGYEVLLTCRKFGELPELLRSLGFQVKSI--GK-HGATLIKKLLSS---AERVYL 74 (335)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEE--CC-CCCCHHHHHHHH---HHHHHH
T ss_conf 3999789-9508888999999998689889999961351999999769976997--58-888889999999---999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCC-CCC-CCCCC-E
Q ss_conf 35554203444243126532102478886234110122153200156778899999874134--3222-235-56673-2
Q gi|254781097|r 85 SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIARGL--VSSQ-KKV-LLRKI-I 159 (369)
Q Consensus 85 ~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vihEqN~v~G~~nk~l~~~a~~v~~~~--~~~~-~~~-~~~k~-~ 159 (369)
T Consensus 75 L~~~~~~~~PDv~is~~S---~~a~~va~~LgipsI~f~Dteha~~~~~Lt~Pf~~~i~~P~~~~~~~~~~~G~~~~i~~ 151 (335)
T pfam04007 75 LTKLIPEKKPDVAIMKNS---MELPRVAFGLRIPSIIVLDNEHALAANKLTFPLADYILVPEIIDDEFLRFFGADNRIRT 151 (335)
T ss_pred HHHHHHHHCCCEEEECCC---HHHHHHHHHCCCCEEEEECCHHHCCCCEEEEECCCEEECCCCCCHHHHHHHCCCCCEEE
T ss_conf 999988629978994488---01999998829987999477554123302312386888124467789986087785676
Q ss_pred EEECC----CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 53044----4324565433344331144781489863043222102---3334454432320246606776202551677
Q gi|254781097|r 160 VTGNP----IRSSLIKMKDIPYQSSDLDQPFHLLVFGGSQGAKVFS---DIVPKSIALIPEMQRKRLVIMQQVREDDKEK 232 (369)
Q Consensus 160 ~~G~P----vR~~~~~~~~~~~~~~~~~~~~~ILv~GGS~Ga~~ln---~~v~~~~~~l~~~~~~~~~v~~~~g~~~~~~ 232 (369)
T Consensus 152 y~g~~E~a~l~-~F-~Pd~~vl~~lgl~~~~yIvvR~~~~~A~y~~g~~~i~~~ii~~l~~~~~-~iv~~--pr~~~q~~ 226 (335)
T pfam04007 152 YPGIKEIANIS-DY-VPDPEILKKLGLEFEEYIVMRPEPLASSYVNGHESILPEIIEMLTKEGV-NIIYF--PRNKEQRE 226 (335)
T ss_pred ECCCCEEEECC-CC-CCCHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHHHHHCCC-CEEEE--CCCCHHHH
T ss_conf 66844143216-66-8986578764998798899961645560011442159999999987598-19997--58703667
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 65322100111134544445144430044899725420233345529604875335524898999899999889889980
Q gi|254781097|r 233 VQKQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVIT 312 (369)
Q Consensus 233 ~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~ 312 (369)
T Consensus 227 ---~~~~--~~v~i~~~~vd~~~Lly~adl~Ig-~GgTMa~EAAlLGtPaIs~-~p~~~-~~---vd~~l~~~gl~~~~~ 295 (335)
T pfam04007 227 ---IFRG--FDVIIPKKPVDTLSLLYYSDLVIG-AGGTMNREAALLGTPAVSC-YPGKL-LA---VDKYLIEKGEMYHST 295 (335)
T ss_pred ---HHCC--CCEECCCCCCCHHHHHHHCCEEEC-CCHHHHHHHHHHCCCEEEE-CCCCC-CH---HHHHHHHCCCEEEEC
T ss_conf ---7504--770367888777888865468972-7568999999828987984-38852-13---679998679879618
Q ss_pred HHCCCHHHHHHHHHHHHC
Q ss_conf 001998999999999861
Q gi|254781097|r 313 ENFLSPERLAEELCSAMK 330 (369)
Q Consensus 313 ~~~~~~~~l~~~i~~ll~ 330 (369)
T Consensus 296 ----d~~~i~~~v~~~~~ 309 (335)
T pfam04007 296 ----DPREIVNYVISNLK 309 (335)
T ss_pred ----CHHHHHHHHHHHHH
T ss_conf ----98999999999860