BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 369

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVS 60
           MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVS
Sbjct: 1   MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVS 60

Query: 61  SQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120
           SQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM
Sbjct: 61  SQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120

Query: 121 VHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSS 180
           VHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSS
Sbjct: 121 VHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSS 180

Query: 181 DLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL 240
           DLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL
Sbjct: 181 DLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDEL 240

Query: 241 GCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300
           GCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY
Sbjct: 241 GCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAY 300

Query: 301 YLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360
           YLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK
Sbjct: 301 YLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEK 360

Query: 361 LAHVKVDLV 369
           LAHVKVDLV
Sbjct: 361 LAHVKVDLV 369


>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 562

 Score = 28.5 bits (62), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 93  KPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIAR 144
           +P + +G   Y S S LL  +I   PS+VH++  ++G+   +LS   Q +AR
Sbjct: 27  QPPLFIGMNAYSSDS-LLVALIANFPSVVHKELELLGE--YVLSCTAQELAR 75


>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 536

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 121 VHEQNVIMGKANRLLSWGVQIIARG 145
           VH +  ++  A+RLLS G++II+ G
Sbjct: 23  VHNKTGVVEFASRLLSRGIKIISTG 47


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 24.6 bits (52), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 28  LKNRGYAVYLITDRRARSFITDFPADSIY 56
           L N G + +L +  RA+  I D+P  ++Y
Sbjct: 167 LPNAGKSTFLASVTRAKPKIADYPFTTLY 195


>gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 98

 Score = 24.3 bits (51), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 314 NFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLM 353
           ++LS  +L + L    KK  CLV   + ++ +G P  +++
Sbjct: 4   DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLII 43


>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 246 LACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPA 282
           + C F  ++  + + +  IC    L ++E+++I +P 
Sbjct: 91  VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127


>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 24.3 bits (51), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 282 AILVPYPHSVDQDQLHNAYYLQEGGG 307
           A ++PY HS+ + ++H A +   G G
Sbjct: 274 AEMIPYDHSIGEFRVHYAGFFDPGFG 299


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score = 23.5 bits (49), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 262 LLICRSGALTVSEIAVIGRPAILVPYPH 289
           L+ C S  +  +E +++G   +L  YP+
Sbjct: 113 LISCASNIIVAAETSLVGSIGVLFQYPY 140


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
          decarboxylase/phosphopantothenate synthase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 23.1 bits (48), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 1  MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT 48
          +S   + L++ G     V+ ++ L   L+ RG  V  +  + A+ FIT
Sbjct: 3  LSGKKIALIMCGSVA--VYKSLDLIRRLRERGAVVIPVMTKSAQKFIT 48


>gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 23.1 bits (48), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 30  NRGYAVYLITDRRARSFITD 49
           NRGYAV ++T    R  + D
Sbjct: 82  NRGYAVRIVTSENERRKLAD 101


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,924
Number of Sequences: 1233
Number of extensions: 9745
Number of successful extensions: 26
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 13
length of query: 369
length of database: 328,796
effective HSP length: 75
effective length of query: 294
effective length of database: 236,321
effective search space: 69478374
effective search space used: 69478374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)