HHsearch alignment for GI: 254781098 and conserved domain: COG3307

>COG3307 RfaL Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].

Probab=95.22  E-value=0.22  Score=27.35  Aligned_cols=70  Identities=17%  Similarity=0.149  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCC---------CCC------CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             101222222205740002254555---------655------553--210000188889863466567999999999999
Q gi|254781098|r  229 FQIDSSRDAIIHGGWFGKGPGEGV---------IKR------VIP--DSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVR  291 (385)
Q Consensus       229 yQ~~qs~~Ai~sGG~~G~G~g~~~---------~~~------~lP--e~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r  291 (385)
T Consensus       283 ~iW~~al~~i~~~Pi~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~HN~~L~--~~~e~Gi~Gl~~~~~~~~~~~~~  360 (424)
T COG3307         283 DIWEAALEAIKERPIFGYGYGAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLE--ILLETGILGLLLLLALLLVILLL  360 (424)
T ss_pred             HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHH--HHHHHCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999968923860750256776540230311677773267787479999--99995899999999999999999


Q ss_pred             HHHHHHHCC
Q ss_conf             999998357
Q gi|254781098|r  292 SFLYSLVES  300 (385)
Q Consensus       292 ~~~~a~~~~  300 (385)
T Consensus       361 ~~~~~~~~~  369 (424)
T COG3307         361 FLKRTRKNA  369 (424)
T ss_pred             HHHHHHHCC
T ss_conf             999875135