HHsearch alignment for GI: 254781098 and conserved domain: TIGR02210
>TIGR02210 rodA_shape rod shape-determining protein RodA; InterPro: IPR011923 This protein is a member of the FtsW/RodA/SpoVE family. It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologues from a number of both rod-shaped and coccoid bacteria (including four proteins in Bacillus anthracis) are not found in this family.; GO: 0008360 regulation of cell shape, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=733.69 Aligned_cols=345 Identities=28% Similarity=0.525 Sum_probs=322.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38999999999999999999528899986089806999999999999999999999769899998433477898776542
Q gi|254781098|r 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFL 97 (385)
Q Consensus 18 D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~lLil 97 (385)
T Consensus 1 D~~Ll~~~~~i~~~G~~~lySA~~~~~---~~~~~~~~~kQ~~~~~~G~~~~~~~~~~~~~~~~~~a~~~Y~~~~~LL~~ 77 (416)
T TIGR02210 1 DWLLLILILLIAIVGLLVLYSASGANL---TSGTSSLAIKQLVWFIIGLVLMIIVSFIDYRFLYRLAYIIYVLGLLLLIV 77 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 937899999999999998884124233---11269999999999999999999998449889987689999999999999
Q ss_pred CCCCCCCCCCCCEEEEC-CEEEECHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 03222323211102201-02334669988765555678887630364--3324423210023555567753101121011
Q gi|254781098|r 98 TLFWGVEIKGAKRWLYI-AGTSVQPSEFMKPSFIIVSAWFFAEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSIL 174 (385)
Q Consensus 98 v~~~G~~~~Ga~rWI~l-G~~siQPSE~~Ki~~il~lA~~l~~~~~~--~~~~~~i~~~~i~~~~~~Li~~qPDlGtali 174 (385)
T Consensus 78 V~~fG~~~~GA~RWi~lGG~~~~QPSE~~Ki~l~l~lA~yl~~~~~~~~~~~~~~~~~~~~i~~P~~Li~~QPDLGTa~~ 157 (416)
T TIGR02210 78 VLFFGKVSNGAQRWIDLGGFIRLQPSEFAKIALILMLARYLDNRPIPRIPKFRELLLPLLIILIPVILILKQPDLGTALL 157 (416)
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99962554422001014860000633589999999999985226766521079999999999866866440688744999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----------------------------------CHHHHHCCC--CHHH---------
Q ss_conf 0122212233332222222210----------------------------------000110010--0013---------
Q gi|254781098|r 175 VSLIWDCMFFITGISWLWIVVF----------------------------------AFLGLMSLF--IAYQ--------- 209 (385)
Q Consensus 175 i~~i~~~ml~isg~~~~~l~~~----------------------------------~~~~~~~~~--~~~~--------- 209 (385)
T Consensus 158 ~~~~g~~~lF~AGl~~~~i~~~~~~lll~F~LP~W~~~~~~~~V~~I~~~~~~~~~~~~~~~a~p~~w~f~s~~~~~Yyy 237 (416)
T TIGR02210 158 VLAIGLFVLFLAGLRWRIILAGVLVLLLLFLLPLWEEYKLNYGVAYIASFLFVVFFVLALIVAIPILWFFLSKYKKIYYY 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 99999998887545699999999999999983125888887789999999999999999999999998752387233304
Q ss_pred ----------------HHHHHCCCCCHHCCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCC--C-CCCCCCCCCHH
Q ss_conf ----------------333100121000044----786410122222220574000225455565--5-55321000018
Q gi|254781098|r 210 ----------------TMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFGKGPGEGVIK--R-VIPDSHTDFVF 266 (385)
Q Consensus 210 ----------------~~~y~~~Ri~~~ldp----~~~gyQ~~qs~~Ai~sGG~~G~G~g~~~~~--~-~lPe~~tDfIf 266 (385)
T Consensus 238 v~yA~~~vS~~S~~~ll~dYQk~Rv~~FLnPe~DpLG~GY~iiQSkIAIGSGGl~GKG~~~GTQsqL~~FLPE~~TDFIF 317 (416)
T TIGR02210 238 VFYASILVSIASVVKLLHDYQKKRVLTFLNPESDPLGAGYNIIQSKIAIGSGGLFGKGFLQGTQSQLNEFLPEKHTDFIF 317 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 78999999999999974768998877640877576666348899999986140450212478631025768986563364
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88898634665679999999999999999983578307899999999999999999997506735777558542339589
Q gi|254781098|r 267 SVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSS 346 (385)
Q Consensus 267 a~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~~gl~P~tGi~LPFiSyGGss 346 (385)
T Consensus 318 sV~~EE~GFvG~~~LL~LY~~li~~~l~ia~~~~d~F~~L~~~G~~~~ff~~~fvNiGMv~GllPVvGvPLPl~SYGGSS 397 (416)
T TIGR02210 318 SVLGEEFGFVGSIALLLLYLLLIGRGLYIASQAQDLFGKLVAGGIASTFFFYVFVNIGMVMGLLPVVGVPLPLLSYGGSS 397 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 57999888999999999999999999999973354247999999999999999999999971356345654201410799
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999998650204
Q gi|254781098|r 347 ILGICITMGYLLALTCRRP 365 (385)
Q Consensus 347 ll~~~~~~Gi~l~i~~~~~ 365 (385)
T Consensus 398 ~~t~~~~fGl~~si~~~r~ 416 (416)
T TIGR02210 398 MITLMIGFGLLMSIHVHRY 416 (416)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998753169