Query gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] Match_columns 385 No_of_seqs 166 out of 4269 Neff 7.5 Searched_HMMs 39220 Date Mon May 30 04:50:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781098.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR02614 ftsW cell division p 100.0 0 0 754.3 26.1 347 18-364 1-370 (370) 2 TIGR02210 rodA_shape rod shape 100.0 0 0 733.7 23.1 345 18-365 1-416 (416) 3 TIGR02615 spoVE stage V sporul 100.0 0 0 717.5 22.7 345 18-362 1-356 (356) 4 PRK10774 cell division protein 100.0 0 0 698.2 25.2 356 16-371 34-399 (405) 5 PRK10794 cell wall shape-deter 100.0 0 0 671.5 26.6 350 11-368 8-367 (370) 6 pfam01098 FTSW_RODA_SPOVE Cell 100.0 0 0 666.9 25.6 347 20-366 3-356 (356) 7 COG0772 FtsW Bacterial cell di 100.0 0 0 667.1 25.2 365 6-372 2-380 (381) 8 TIGR03097 PEP_O_lig_1 probable 96.4 0.068 1.7E-06 30.4 16.5 180 116-302 162-357 (402) 9 COG3307 RfaL Lipid A core - O- 95.2 0.22 5.5E-06 27.3 12.4 70 229-300 283-369 (424) 10 pfam04018 DUF368 Domain of unk 87.3 2 5.2E-05 21.5 7.4 60 7-74 42-101 (250) 11 COG1033 Predicted exporters of 74.9 5.8 0.00015 18.8 7.1 43 316-361 599-641 (727) 12 PRK04125 murein hydrolase regu 73.8 4.6 0.00012 19.4 3.6 67 306-374 63-129 (141) 13 pfam01222 ERG4_ERG24 Ergostero 72.6 2.1 5.4E-05 21.4 1.7 97 206-307 313-413 (429) 14 pfam04932 Wzy_C O-Antigen liga 71.0 1.4 3.5E-05 22.5 0.4 48 232-281 92-142 (143) 15 TIGR01722 MMSDH methylmalonate 63.6 2.5 6.4E-05 21.0 0.5 33 312-346 417-450 (478) 16 TIGR02275 DHB_AMP_lig 2,3-dihy 59.0 4.6 0.00012 19.4 1.2 13 256-268 204-216 (534) 17 COG0861 TerC Membrane protein 52.1 16 0.00041 16.1 9.5 103 260-372 141-252 (254) 18 MTH00057 ND6 NADH dehydrogenas 50.7 17 0.00043 16.0 8.8 33 59-91 29-62 (184) 19 pfam01773 Nucleos_tra2_N Na+ d 46.3 12 0.00031 16.8 1.7 29 127-155 3-31 (75) 20 COG4038 Predicted membrane pro 42.0 23 0.00059 15.2 3.2 39 330-368 40-78 (87) 21 PRK11380 hypothetical protein; 40.4 24 0.00062 15.0 3.9 16 108-123 45-60 (294) 22 pfam08781 DP Transcription fac 40.4 12 0.0003 16.9 0.9 13 328-340 48-60 (141) 23 COG4858 Uncharacterized membra 39.8 25 0.00064 15.0 2.8 62 17-80 91-152 (226) 24 PRK09577 multidrug efflux prot 39.8 10 0.00026 17.3 0.5 31 323-359 904-934 (1032) 25 KOG3146 consensus 37.0 28 0.00071 14.7 5.2 27 303-332 160-186 (228) 26 pfam05915 DUF872 Eukaryotic pr 36.6 28 0.00072 14.7 4.6 49 17-69 36-84 (112) 27 PRK10352 nickel transporter pe 35.9 29 0.00074 14.6 10.6 14 74-87 59-72 (314) 28 pfam02118 Srg Srg family chemo 35.1 22 0.00055 15.3 1.6 17 58-74 4-20 (275) 29 pfam01034 Syndecan Syndecan do 32.8 33 0.00083 14.3 3.9 33 263-302 151-183 (207) 30 pfam03699 UPF0182 Uncharacteri 32.2 33 0.00085 14.2 4.1 16 364-379 300-315 (771) 31 PRK11056 hypothetical protein; 29.6 16 0.0004 16.2 0.1 20 166-185 87-106 (120) 32 PRK01658 holin-like protein; V 29.2 37 0.00095 13.9 2.6 24 63-86 35-61 (122) 33 COG4956 Integral membrane prot 28.6 38 0.00098 13.9 7.4 45 30-74 12-56 (356) 34 KOG1435 consensus 27.8 35 0.00088 14.1 1.6 66 241-310 350-415 (428) 35 pfam02517 Abi CAAX amino termi 27.7 40 0.001 13.8 5.8 70 262-364 5-74 (96) 36 pfam00771 FHIPEP FHIPEP family 27.5 25 0.00065 14.9 0.9 16 324-341 267-283 (658) 37 TIGR00783 ccs citrate carrier 27.0 41 0.001 13.7 4.0 26 264-289 271-299 (429) 38 PRK09579 multidrug efflux prot 26.6 42 0.0011 13.7 3.8 32 322-359 882-913 (1017) 39 pfam06570 DUF1129 Protein of u 26.2 42 0.0011 13.6 5.6 29 11-39 75-103 (206) 40 PRK12792 flhA flagellar biosyn 26.0 31 0.00078 14.4 1.1 20 323-344 294-314 (694) 41 KOG2438 consensus 25.4 28 0.00071 14.7 0.7 31 264-294 322-352 (505) 42 KOG0182 consensus 24.1 28 0.00071 14.7 0.6 34 215-248 9-42 (246) 43 KOG1690 consensus 24.0 46 0.0012 13.4 1.7 22 361-382 159-180 (215) 44 pfam07226 DUF1422 Protein of u 23.1 26 0.00066 14.9 0.2 19 166-184 87-105 (118) 45 TIGR01103 fliP flagellar biosy 22.7 34 0.00086 14.2 0.7 19 321-339 160-180 (202) 46 PRK06569 F0F1 ATP synthase sub 21.4 53 0.0013 13.0 3.2 23 52-74 6-28 (157) 47 PTZ00246 proteasome subunit al 21.4 39 0.001 13.8 0.9 32 213-244 3-34 (253) 48 PRK09174 F0F1 ATP synthase sub 21.2 53 0.0014 13.0 3.4 17 55-71 52-68 (204) 49 COG1021 EntE Peptide arylation 21.1 27 0.0007 14.7 0.0 19 21-39 91-109 (542) 50 PRK10555 aminoglycoside/multid 20.9 9.2 0.00024 17.6 -2.4 31 323-359 908-938 (1037) 51 KOG0860 consensus 20.7 55 0.0014 12.9 3.5 22 13-34 88-109 (116) 52 PRK10999 malF maltose transpor 20.6 55 0.0014 12.9 4.3 28 11-38 10-39 (520) 53 TIGR02896 spore_III_AF stage I 20.4 55 0.0014 12.9 3.3 31 73-103 22-52 (113) 54 cd03752 proteasome_alpha_type_ 20.2 46 0.0012 13.4 1.0 29 214-242 2-30 (213) No 1 >TIGR02614 ftsW cell division protein FtsW; InterPro: IPR013437 FtsW is an integral membrane protein with ten transmembrane segments . In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. The FtsW designation is not used in endospore-forming bacteria (e.g. Bacillus subtilis), where these proteins are designated SpoVE, and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensable for growth. Biological roles for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site.; GO: 0009252 peptidoglycan biosynthetic process, 0051301 cell division, 0016021 integral to membrane. Probab=100.00 E-value=0 Score=754.28 Aligned_cols=347 Identities=37% Similarity=0.677 Sum_probs=330.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 3899999999999999999952889998608----980699999999999999999999976989999843347789877 Q gi|254781098|r 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLG----LENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLI 93 (385) Q Consensus 18 D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~----~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~ 93 (385) |+.++.+++.|+++|++|+||||...+++.+ +|++||++||++|..+|+.+|++++++|++.+||++++++.++++ T Consensus 1 D~~l~~~~l~L~~~GlvMV~SaS~~~a~~~~~~d~~~~~~f~~Rq~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (370) T TIGR02614 1 DRLLLFVVLLLLGIGLVMVYSASAAVAERLGLSDEGDPFYFLKRQLFYALLGLILMFVASRVPLRFWRKLSVPLLLIAIV 80 (370) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 87999999999999999999766999986068887636899999999999999999999976899999999999999999 Q ss_pred HHHHCCCC--CCCCC-CCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCCCC--CC-CCCCCCHHHHHHHHHHHH-H Q ss_conf 65420322--23232-111022010233466998876555567888763036433--24-423210023555567753-1 Q gi|254781098|r 94 AMFLTLFW--GVEIK-GAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPE--IP-GNIFSFILFGIVIALLIA-Q 166 (385) Q Consensus 94 lLilv~~~--G~~~~-Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~~~--~~-~~i~~~~i~~~~~~Li~~-q 166 (385) +|++|+++ |.++| ||||||++|++++||||++|+++++++|++++||+++.+ ++ +.+++..+....+.++++ | T Consensus 81 LL~lVlipGiG~~vn~Ga~RWI~lG~~~~QPSE~~K~a~~~~lA~~l~~~~~~~~~~~~~G~~~~~~~~~~~~~lLl~~q 160 (370) T TIGR02614 81 LLVLVLIPGIGKSVNKGARRWIGLGGFSIQPSEFAKLALIIYLAWYLARKQKEVKSFKKKGFLPPLAVLGLLVGLLLLLQ 160 (370) T ss_pred HHHHHCCCCCCCEECCCCCCHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 99996338887102576522020165023187999999999999999875555302000003888999999999999733 Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHCCC----C----CCCCHHHHHHHHH Q ss_conf 0112101101222122333322222222100001100100013333100121000044----7----8641012222222 Q gi|254781098|r 167 PDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----V----GDSFQIDSSRDAI 238 (385) Q Consensus 167 PDlGtalii~~i~~~ml~isg~~~~~l~~~~~~~~~~~~~~~~~~~y~~~Ri~~~ldp----~----~~gyQ~~qs~~Ai 238 (385) ||+||+++++.++++|+|++|.|.+|+......++......+...|||.+|+++|+|| . |+|||+.||++|+ T Consensus 161 PDfG~~~~~~~~~~~~lf~AG~~~~~~~~~~~~~~~~~~~l~~~~pYR~~Ri~~Fl~P~~Dp~~~~~g~gyQl~qsl~A~ 240 (370) T TIGR02614 161 PDFGTTVVIFLILLGMLFLAGAPLRYFALLLLLGLLGLVILIVSSPYRMRRILSFLDPWADPFLADQGSGYQLTQSLIAL 240 (370) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 88038999999999999980501999999999999999999985427999999873777664010478960499999998 Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHH Q ss_conf 0574000225455565-5553210000188889863466567999999999999999998357---83078999999999 Q gi|254781098|r 239 IHGGWFGKGPGEGVIK-RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES---NDFIRMAIFGLALQ 314 (385) Q Consensus 239 ~sGG~~G~G~g~~~~~-~~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~---~~~~~~l~~G~~~~ 314 (385) ++|||+|+|+|||.|| .||||||||||||+++||+|++|+.+++.||+.+++|++++++|++ |.|++++++|++++ T Consensus 241 g~GG~~G~GLG~s~qKl~yLPeAhtDFIfav~gEElG~iG~~~v~~Lf~~l~~r~~~Ia~~a~~~~~~F~~~~A~Gi~~~ 320 (370) T TIGR02614 241 GRGGLFGVGLGNSVQKLFYLPEAHTDFIFAVIGEELGLIGVLIVILLFALLVWRGLRIALRAEELEDLFGRYLAYGITIW 320 (370) T ss_pred HCCCCEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 67985674168754113579974215999999999999999999999999999999999866552036899999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999997506735777558542339589999999999999865020 Q gi|254781098|r 315 IALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRR 364 (385) Q Consensus 315 ~~~q~~~ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~ 364 (385) +..|+++|+|+|+|++|+||+||||+||||||++++++++|+++|++|++ T Consensus 321 i~~Qa~iN~gVv~GllP~kGltLPfiSYGGSSl~~~~~a~GlLL~~~r~~ 370 (370) T TIGR02614 321 IGLQAFINIGVVLGLLPTKGLTLPFISYGGSSLVATLIAIGLLLRISREE 370 (370) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999961446466656420203489999999999998754159 No 2 >TIGR02210 rodA_shape rod shape-determining protein RodA; InterPro: IPR011923 This protein is a member of the FtsW/RodA/SpoVE family. It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologues from a number of both rod-shaped and coccoid bacteria (including four proteins in Bacillus anthracis) are not found in this family.; GO: 0008360 regulation of cell shape, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=100.00 E-value=0 Score=733.69 Aligned_cols=345 Identities=28% Similarity=0.525 Sum_probs=322.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 38999999999999999999528899986089806999999999999999999999769899998433477898776542 Q gi|254781098|r 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFL 97 (385) Q Consensus 18 D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~lLil 97 (385) ||.++..+++++++|++++||||.... ..+......||.+|..+|+++|++++++|||+++|+++++|+.++++|+. T Consensus 1 D~~Ll~~~~~i~~~G~~~lySA~~~~~---~~~~~~~~~kQ~~~~~~G~~~~~~~~~~~~~~~~~~a~~~Y~~~~~LL~~ 77 (416) T TIGR02210 1 DWLLLILILLIAIVGLLVLYSASGANL---TSGTSSLAIKQLVWFIIGLVLMIIVSFIDYRFLYRLAYIIYVLGLLLLIV 77 (416) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 937899999999999998884124233---11269999999999999999999998449889987689999999999999 Q ss_pred CCCCCCCCCCCCEEEEC-CEEEECHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH Q ss_conf 03222323211102201-02334669988765555678887630364--3324423210023555567753101121011 Q gi|254781098|r 98 TLFWGVEIKGAKRWLYI-AGTSVQPSEFMKPSFIIVSAWFFAEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSIL 174 (385) Q Consensus 98 v~~~G~~~~Ga~rWI~l-G~~siQPSE~~Ki~~il~lA~~l~~~~~~--~~~~~~i~~~~i~~~~~~Li~~qPDlGtali 174 (385) |.++|++.|||||||++ |++++||||++|+++++.+|++++++..+ +++++...++.+.++|+.|++.|||||||++ T Consensus 78 V~~fG~~~~GA~RWi~lGG~~~~QPSE~~Ki~l~l~lA~yl~~~~~~~~~~~~~~~~~~~~i~~P~~Li~~QPDLGTa~~ 157 (416) T TIGR02210 78 VLFFGKVSNGAQRWIDLGGFIRLQPSEFAKIALILMLARYLDNRPIPRIPKFRELLLPLLIILIPVILILKQPDLGTALL 157 (416) T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 99962554422001014860000633589999999999985226766521079999999999866866440688744999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----------------------------------CHHHHHCCC--CHHH--------- Q ss_conf 0122212233332222222210----------------------------------000110010--0013--------- Q gi|254781098|r 175 VSLIWDCMFFITGISWLWIVVF----------------------------------AFLGLMSLF--IAYQ--------- 209 (385) Q Consensus 175 i~~i~~~ml~isg~~~~~l~~~----------------------------------~~~~~~~~~--~~~~--------- 209 (385) +.++.+.+++.+|+|+|++... ....+.+.+ -.+. T Consensus 158 ~~~~g~~~lF~AGl~~~~i~~~~~~lll~F~LP~W~~~~~~~~V~~I~~~~~~~~~~~~~~~a~p~~w~f~s~~~~~Yyy 237 (416) T TIGR02210 158 VLAIGLFVLFLAGLRWRIILAGVLVLLLLFLLPLWEEYKLNYGVAYIASFLFVVFFVLALIVAIPILWFFLSKYKKIYYY 237 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH T ss_conf 99999998887545699999999999999983125888887789999999999999999999999998752387233304 Q ss_pred ----------------HHHHHCCCCCHHCCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCC--C-CCCCCCCCCHH Q ss_conf ----------------333100121000044----786410122222220574000225455565--5-55321000018 Q gi|254781098|r 210 ----------------TMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFGKGPGEGVIK--R-VIPDSHTDFVF 266 (385) Q Consensus 210 ----------------~~~y~~~Ri~~~ldp----~~~gyQ~~qs~~Ai~sGG~~G~G~g~~~~~--~-~lPe~~tDfIf 266 (385) .+||||+|+.+|+|| .|+|||+.|||+||||||++|||+.+|+|. + ||||.|||||| T Consensus 238 v~yA~~~vS~~S~~~ll~dYQk~Rv~~FLnPe~DpLG~GY~iiQSkIAIGSGGl~GKG~~~GTQsqL~~FLPE~~TDFIF 317 (416) T TIGR02210 238 VFYASILVSIASVVKLLHDYQKKRVLTFLNPESDPLGAGYNIIQSKIAIGSGGLFGKGFLQGTQSQLNEFLPEKHTDFIF 317 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 78999999999999974768998877640877576666348899999986140450212478631025768986563364 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH Q ss_conf 88898634665679999999999999999983578307899999999999999999997506735777558542339589 Q gi|254781098|r 267 SVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSS 346 (385) Q Consensus 267 a~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~~gl~P~tGi~LPFiSyGGss 346 (385) |+++|||||+|+..++.||+.++.|++.+|.++||.|+|+++.|++..+++|+++|+||+.|++|+||+||||+|||||| T Consensus 318 sV~~EE~GFvG~~~LL~LY~~li~~~l~ia~~~~d~F~~L~~~G~~~~ff~~~fvNiGMv~GllPVvGvPLPl~SYGGSS 397 (416) T TIGR02210 318 SVLGEEFGFVGSIALLLLYLLLIGRGLYIASQAQDLFGKLVAGGIASTFFFYVFVNIGMVMGLLPVVGVPLPLLSYGGSS 397 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 57999888999999999999999999999973354247999999999999999999999971356345654201410799 Q ss_pred HHHHHHHHHHHHHHHCCCH Q ss_conf 9999999999998650204 Q gi|254781098|r 347 ILGICITMGYLLALTCRRP 365 (385) Q Consensus 347 ll~~~~~~Gi~l~i~~~~~ 365 (385) +++.|+++|+++||+.||+ T Consensus 398 ~~t~~~~fGl~~si~~~r~ 416 (416) T TIGR02210 398 MITLMIGFGLLMSIHVHRY 416 (416) T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 9999999999998753169 No 3 >TIGR02615 spoVE stage V sporulation protein E; InterPro: IPR013438 Like FtsW, SpoVE proteins are encoded in a peptidoglycan operon context, but found only in endospore-forming bacteria such as Bacillus, Geobacillus and Oceanobacillus. In these genera they are part of a larger set of paralogs (not just the pair FtsW and RodA) and are required specifically for sporulation, not for viability.. Probab=100.00 E-value=0 Score=717.54 Aligned_cols=345 Identities=30% Similarity=0.503 Sum_probs=331.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 38999999999999999999528899986089806999999999999999999999769899998433477898776542 Q gi|254781098|r 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFL 97 (385) Q Consensus 18 D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~lLil 97 (385) |+.+++.+.+|+.+|++||||||+..|++.++|++||.|||.+|..+|+.+|+++.++||.++|||++.+.+++.++|++ T Consensus 1 Dy~ll~v~~lL~~iGvvMVySaS~~~a~Yk~~D~~YFlKRQ~l~A~~G~~aM~f~mnvdY~~~k~~~k~ll~I~~vLL~l 80 (356) T TIGR02615 1 DYLLLIVVMLLVAIGVVMVYSASAVWAEYKFNDSFYFLKRQLLFAILGVFAMFFTMNVDYYTWKRWAKMLLVICFVLLLL 80 (356) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 94688779999988898887678776420337518999999999999999999998516367899977999999999999 Q ss_pred CCCC--CCCCCCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCCCH Q ss_conf 0322--23232111022010233466998876555567888763036433--2442321002355556775310112101 Q gi|254781098|r 98 TLFW--GVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPE--IPGNIFSFILFGIVIALLIAQPDFGQSI 173 (385) Q Consensus 98 v~~~--G~~~~Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~~~--~~~~i~~~~i~~~~~~Li~~qPDlGtal 173 (385) |+.+ |.++|||||||.+|.+|+||||++|..+++++|+++++|+|+.+ .++.++.+.+.+...++++.|||+||+. T Consensus 81 VlipGvG~~r~ga~~WIg~G~fs~QPSE~~K~~liiyLAk~l~~~~~~i~sl~~G~iP~L~~~g~~fglim~qp~lsta~ 160 (356) T TIGR02615 81 VLIPGVGMERNGARRWIGVGAFSIQPSEIAKYALIIYLAKYLSEKQEYITSLRKGVIPVLLLAGVAFGLIMLQPNLSTAT 160 (356) T ss_pred HHHCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 97357536767831102215743274689999999999988641463000211350234899999998987066766137 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCC--CC----CHHCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 1012221223333222222221000011001000133331001--21----00004478641012222222057400022 Q gi|254781098|r 174 LVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAI--RI----NHFMTGVGDSFQIDSSRDAIIHGGWFGKG 247 (385) Q Consensus 174 ii~~i~~~ml~isg~~~~~l~~~~~~~~~~~~~~~~~~~y~~~--Ri----~~~ldp~~~gyQ~~qs~~Ai~sGG~~G~G 247 (385) ++..++.+|+|+||.|..|+..+...++..+.......||+.+ |+ |||.||.++|||+.||+.|+|+||+||.| T Consensus 161 v~~~~~~vmlFVAGA~lsh~~~l~~~~~~~gva~~~~~pfr~~reR~~~FlNPW~Dp~g~GyQiiQSlyAlGsGGl~G~G 240 (356) T TIGR02615 161 VIVLVCVVMLFVAGARLSHLIILVGIGISGGVALILSAPFRIKRERILSFLNPWEDPLGSGYQIIQSLYALGSGGLFGVG 240 (356) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEECC T ss_conf 78889999999875899999999999999988888632300012002100386726367742665556777276102223 Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 54555655-55321000018888986346656799999999999999999835783078999999999999999999975 Q gi|254781098|r 248 PGEGVIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVN 326 (385) Q Consensus 248 ~g~~~~~~-~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~ 326 (385) +|||.||. |+||.|||||||+++||+|++|+..++++|..+++|+.++|.+++|.|+++++.|++.++.+|+++||+++ T Consensus 241 LG~SrQK~~YlPeP~~DFIFaiigEELGliG~~~IlllF~~l~wRGi~~A~~ApD~Fg~L~A~GI~S~ig~Qa~INiaVV 320 (356) T TIGR02615 241 LGNSRQKLFYLPEPHNDFIFAIIGEELGLIGGTLILLLFLILLWRGIRIALKAPDLFGTLLAVGITSLIGIQALINIAVV 320 (356) T ss_pred CCCHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 34300000008468975042204353227999999999999998468765038860346888999999999999877776 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 067357775585423395899999999999998650 Q gi|254781098|r 327 LHLLPTKGMTMPAISYGGSSILGICITMGYLLALTC 362 (385) Q Consensus 327 ~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~ 362 (385) +|.+|+||+||||+||||||++.++.++|++|||+| T Consensus 321 tg~iPvTGv~LPF~SYGGsSl~l~l~~vGiLLNiSR 356 (356) T TIGR02615 321 TGSIPVTGVTLPFLSYGGSSLTLMLMAVGILLNISR 356 (356) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 027888887677511373899999986135631679 No 4 >PRK10774 cell division protein FtsW; Provisional Probab=100.00 E-value=0 Score=698.19 Aligned_cols=356 Identities=26% Similarity=0.448 Sum_probs=333.4 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 31389999999999999999995288999860898069999999999999999999997698999984334778987765 Q gi|254781098|r 16 TVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAM 95 (385) Q Consensus 16 ~~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~lL 95 (385) ..||.++.+++.|+++|++|+||||+..+.+.+.|++||++||++|+++|++++++++++||++++|++++++.+++++| T Consensus 34 ~fD~~Ll~~vl~L~~iGlvmVySAS~~~a~~~~~~p~~f~~RQli~~~iGl~~~~~~~~i~~~~~~k~s~~~~~~~i~LL 113 (405) T PRK10774 34 MYDRTLLWLTFGLAAIGFVMVTSASMPIGQRLANDPFLFAKRDALYLILAFILALITLRLPMEFWQRYSATMLLGSIILL 113 (405) T ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 04699999999999999999864389999885799189999999999999999999998799999999999999999999 Q ss_pred HHCCCCCCCCCCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCH Q ss_conf 420322232321110220102334669988765555678887630364--332442321002355556775310112101 Q gi|254781098|r 96 FLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSI 173 (385) Q Consensus 96 ilv~~~G~~~~Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~--~~~~~~i~~~~i~~~~~~Li~~qPDlGtal 173 (385) ++++++|.++|||+||+++|++++||||++|+++++++|.+++++.++ ++++....+..+..++..+++.|||+|||+ T Consensus 114 llvli~G~~vnGA~RWI~lG~~s~QPSE~aKi~lIl~lA~~l~~~~~~~~~~~~~~~~~l~i~~i~~~LillQPDlGTa~ 193 (405) T PRK10774 114 LIVLVVGSSVNGASRWIALGPLRIQPAELTKLSLFCYLANYLVRKVDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVV 193 (405) T ss_pred HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 99997487537723688789885758999999999999999998477652528999999999999999999726720799 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHCCC----CCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 101222122333322222222100001100100013333100121000044----7864101222222205740002254 Q gi|254781098|r 174 LVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFGKGPG 249 (385) Q Consensus 174 ii~~i~~~ml~isg~~~~~l~~~~~~~~~~~~~~~~~~~y~~~Ri~~~ldp----~~~gyQ~~qs~~Ai~sGG~~G~G~g 249 (385) +++.++++|++++|.+.+++......+...........|||.+|+.+|+|| .|+|||..||++|++|||++|+|+| T Consensus 194 ii~~i~~~mlfvaG~~~~~~l~~~~~~~~~~~~~~~~~~yr~~Ri~~fl~p~~d~~g~gyQ~~qs~~Ai~sGGl~G~GlG 273 (405) T PRK10774 194 VLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLG 273 (405) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999824289999999999999999999962578759999708521235641799999999861155171788 Q ss_pred CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55565-55532100001888898634665679999999999999999983---578307899999999999999999997 Q gi|254781098|r 250 EGVIK-RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLV---ESNDFIRMAIFGLALQIALQAFINIGV 325 (385) Q Consensus 250 ~~~~~-~~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~---~~~~~~~~l~~G~~~~~~~q~~~ni~~ 325 (385) ||.|| .|+||+|||||||+++||+||+|+..++++|.++++|++++++| .+|+|+++++.|+++++.+|+++||+| T Consensus 274 ~s~qk~~~LPea~tDFIFavi~EE~GfiG~~~vl~l~~~l~~r~~~i~~~a~~~~~~f~~ll~~Gi~~~~~~Q~~iNIgv 353 (405) T PRK10774 274 NSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNVGA 353 (405) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88057887887777699999999989999999999999999999999999765225089999999999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 5067357775585423395899999999999998650204776555 Q gi|254781098|r 326 NLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYE 371 (385) Q Consensus 326 ~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~~~~ 371 (385) |+|++|+||+||||+||||||++++++++|+++||+|+.+.|+++. T Consensus 354 ~~gllP~tGi~LPFiSYGGSSli~~~~~iGill~Is~~~r~~~~~~ 399 (405) T PRK10774 354 AAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQA 399 (405) T ss_pred HCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 8077266788745448686999999999999975747765788750 No 5 >PRK10794 cell wall shape-determining protein; Provisional Probab=100.00 E-value=0 Score=671.49 Aligned_cols=350 Identities=26% Similarity=0.437 Sum_probs=319.9 Q ss_pred HHHHH--HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 89988--3138999999999999999999528899986089806999999999999999999999769899998433477 Q gi|254781098|r 11 AEWFW--TVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILL 88 (385) Q Consensus 11 ~~~~~--~~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~ 88 (385) ..+|+ ++||.++.++++|+++|++++|||| .++.++++||++|+++|++++++++++|||+++|+++++| T Consensus 8 ~~~~~~~~iD~~Ll~~v~~L~~~G~~~vySaS--------~~~~~~~~kQli~~~iG~~~~~~~~~i~~~~~~k~~~~~~ 79 (370) T PRK10794 8 KTFWDKVHIDPTMLLILLALLVYSALVIWSAS--------GQDIGMMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLY 79 (370) T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 21788846889999999999999999986416--------9971799999999999999999999789999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 89877654203222323211102201023346699887655556788876303643324423210023555567753101 Q gi|254781098|r 89 FLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPD 168 (385) Q Consensus 89 ~~~l~lLilv~~~G~~~~Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~~~~~~~i~~~~i~~~~~~Li~~qPD 168 (385) ++++++|++++++|.++||||||+++|++++||||++|+++++++|.+++++.++++.++...++++..+++.+++.||| T Consensus 80 ~~~i~LLllv~~~G~~~nGA~rWI~iG~~~fQPSE~aKi~~Il~lA~~l~r~~~~~~~~~~~~~l~~~~i~~~LI~~qpD 159 (370) T PRK10794 80 IICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPD 159 (370) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999657775782113245875424599999999999999987202342078899999999999999997277 Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCHHHHHHHHCCCCCHHCCCC----CCCCHHHHHHHHHCCCC Q ss_conf 12101101222122333322222222100001100--1000133331001210000447----86410122222220574 Q gi|254781098|r 169 FGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMS--LFIAYQTMPHVAIRINHFMTGV----GDSFQIDSSRDAIIHGG 242 (385) Q Consensus 169 lGtalii~~i~~~ml~isg~~~~~l~~~~~~~~~~--~~~~~~~~~y~~~Ri~~~ldp~----~~gyQ~~qs~~Ai~sGG 242 (385) +||+++++.++++|++++|.++|++.......... ........|||++|+..|+||+ ++|||+.||++|++||| T Consensus 160 lGtalil~~i~~~ml~~ag~~~k~~~~~~~~~~~~~~~~~~~~~~~y~~~Ri~~fl~P~~d~~~~gyQ~~qs~~Ai~sGG 239 (370) T PRK10794 160 LGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGG 239 (370) T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 23899999999999996387699999999999999999999982178876776422752255786159999999998488 Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 000225455565--555321000018888986346656799999999999999999835783078999999999999999 Q gi|254781098|r 243 WFGKGPGEGVIK--RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAF 320 (385) Q Consensus 243 ~~G~G~g~~~~~--~~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~ 320 (385) ++|+|+|+|.|+ +|+||+|||||||+++||+||+|+++++.+|.++++|++++|.|+||+|+++++.|+++++.+|++ T Consensus 240 ~~G~G~~~g~~~~~~~lPe~~tDfIfavi~Ee~G~iG~~~vl~l~~~l~~r~~~ia~~~~d~f~~ll~~G~~~~~~~q~~ 319 (370) T PRK10794 240 LRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVF 319 (370) T ss_pred CCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 72524798732222678651510499999999889999999999999999999999977697999999999999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 999975067357775585423395899999999999998650204776 Q gi|254781098|r 321 INIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKR 368 (385) Q Consensus 321 ~ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~ 368 (385) +|++|++|++|+||+||||+||||||++++++++|+++||+|||+.-. T Consensus 320 iNig~~~gl~P~tGi~LPFiSyGGSsll~~~~~iGill~I~~~rk~~~ 367 (370) T PRK10794 320 VNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLS 367 (370) T ss_pred HHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999077466689803446687999999999999999899986652 No 6 >pfam01098 FTSW_RODA_SPOVE Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE Probab=100.00 E-value=0 Score=666.86 Aligned_cols=347 Identities=31% Similarity=0.583 Sum_probs=331.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999952889998608980699999999999999999999976989999843347789877654203 Q gi|254781098|r 20 FSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTL 99 (385) Q Consensus 20 ~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l~k~~~~~~~~~l~lLilv~ 99 (385) .++.++++|+.+|++++||||+..+.+++.|+++++.||++|+++|++++++++++|||+++|+++++|.++++++++++ T Consensus 3 iLl~~v~~L~~~Gl~~vySas~~~~~~~~~~~~~~~~kQ~~~~~iG~~~~~~~~~~~y~~~~~~~~~~~~~~l~ll~lv~ 82 (356) T pfam01098 3 LLFILLLLLGFLGLVMIYSASGVTSLVLFGDPFFFFKRQLVYLLLGFIIFVVLLRIPLRFLRKWAFYLFIIGLLLLVLVF 82 (356) T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 69999999999999999982678897617980699999999999999999999986999999999999999999999999 Q ss_pred CCCCCCCCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCC Q ss_conf 22232321110220102334669988765555678887630364--3324423210023555567753101121011012 Q gi|254781098|r 100 FWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSILVSL 177 (385) Q Consensus 100 ~~G~~~~Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~--~~~~~~i~~~~i~~~~~~Li~~qPDlGtalii~~ 177 (385) ++|.++||||||+++|++++||||++|+.+++++|+++++++++ +.+++..++....++++.+++.|||+||+++++. T Consensus 83 ~~G~~~~Ga~rWi~lg~~s~QPSE~~Ki~~il~lA~~l~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~qpDlgt~lii~~ 162 (356) T pfam01098 83 VIGPSVNGAKRWIRLGGFSIQPSEFAKIALILFLAAYLGRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGI 162 (356) T ss_pred HHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 92773478105787787364715999999999999999862342042188999999999999999997573014699999 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHCCCC----CCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 221223333222222221000011001000133331001210000447----8641012222222057400022545556 Q gi|254781098|r 178 IWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGV----GDSFQIDSSRDAIIHGGWFGKGPGEGVI 253 (385) Q Consensus 178 i~~~ml~isg~~~~~l~~~~~~~~~~~~~~~~~~~y~~~Ri~~~ldp~----~~gyQ~~qs~~Ai~sGG~~G~G~g~~~~ 253 (385) ++++|++++|.+++++......+.......+...|||++|+.+|+||+ ++|||..|+++|++|||++|+|+|||.+ T Consensus 163 ~~l~ml~~ag~~~~~~~~~~~~~~~~~~~~~~~~~y~~~Ri~~~l~p~~~~~~~gyQ~~~s~~ai~sGGl~G~G~g~~~~ 242 (356) T pfam01098 163 ILLVMLFLAGLPWKLFLGIVGIGVSPIVTLILLEPYQIKRVTSFLDPFKDPLGSGYQIIQSLIAIGSGGIFGKGLGNSQQ 242 (356) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99999998386088989999999999999986377888999998280013478548999999999768880708897765 Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 5-555321000018888986346656799999999999999999835783078999999999999999999975067357 Q gi|254781098|r 254 K-RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPT 332 (385) Q Consensus 254 ~-~~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~~gl~P~ 332 (385) | +++||+|||||||+++||+||+|++.++.+|..+++|++++|.|+||+|+|+++.|+++++.+|+++|++||+|++|+ T Consensus 243 k~~~lP~~~tDfIfa~i~Ee~G~ig~~~vi~l~~~l~~r~~~ia~~~~~~~~~~l~~G~~~~~~~q~~~Ni~~~~gl~P~ 322 (356) T pfam01098 243 KLGYLPEAHTDFIFAVIGEELGFIGALLLLALFFLLIYRGFRIARKAKDRFGRLLAVGISLLIFIQSFINIGMVSGLLPV 322 (356) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 24778765562999999999899999999999999999999999867898999999999999999999999999077266 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 7755854233958999999999999986502047 Q gi|254781098|r 333 KGMTMPAISYGGSSILGICITMGYLLALTCRRPE 366 (385) Q Consensus 333 tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~ 366 (385) ||+||||+||||||++++++++|+++||+|||+| T Consensus 323 tGi~LPFiSyGGss~~~~~~~~Giilsi~r~~k~ 356 (356) T pfam01098 323 TGLPLPFFSYGGSSLLANLILIGILLNISRETKK 356 (356) T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 7997244376779999999999999995786149 No 7 >COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning] Probab=100.00 E-value=0 Score=667.08 Aligned_cols=365 Identities=34% Similarity=0.625 Sum_probs=337.9 Q ss_pred CCCHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHH- Q ss_conf 24616899883-13899999999999999999952889998608980699999999999999999-9999769899998- Q gi|254781098|r 6 ERGILAEWFWT-VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIM-ISFSLFSPKNVKN- 82 (385) Q Consensus 6 ~~~~l~~~~~~-~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~-~~~~~i~~~~l~k- 82 (385) ++....+|+++ .|+.++....+|..+|++++|||+...+++.+ ++++..||..|.++|++++ .++.++|++.++| T Consensus 2 ~~~~~~~~~~~~~d~~ll~~~~~L~~iGlv~i~Sas~~~~~~~~--~~~~~~rq~~~~~lg~~~~~~~~~~~~~~~~~~~ 79 (381) T COG0772 2 LRKMVKKWLKRLIDRLLLLLLLLLAAIGLVMVYSASSAVAERRG--PFYFLIRQLVWLLLGLILALLVILRLPLRFLRKR 79 (381) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 52157888887641999999999999888741003412421352--1689999999999999999999986759999742 Q ss_pred -HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHH Q ss_conf -433477898776542032223232111022010233466998876555567888763036433244--23210023555 Q gi|254781098|r 83 -TAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEIPG--NIFSFILFGIV 159 (385) Q Consensus 83 -~~~~~~~~~l~lLilv~~~G~~~~Ga~rWI~lG~~siQPSE~~Ki~~il~lA~~l~~~~~~~~~~~--~i~~~~i~~~~ 159 (385) .++.+|..++++++.+++.|.++||||||+++|++++||||++|+.+++++|++++++++..+... ..++..+..++ T Consensus 80 ~~~~~~~~~~llllv~v~~~G~~~~GAkrWi~ig~~siQPSEf~Ki~~il~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (381) T COG0772 80 SFAILLYVIILLLLVLVLFFGSSVNGAKRWIALGGLSIQPSEFAKIALILYLAAYLSRKGDEIKSFLRLFLKLILLVALP 159 (381) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 17999999999999999853655677421257787687844899999999999999966762001366899999999999 Q ss_pred HHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCH---HHHHHHHCCCCCHHCCCC----CCCCHHH Q ss_conf 567753101121011012221223333222222221000011001000---133331001210000447----8641012 Q gi|254781098|r 160 IALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIA---YQTMPHVAIRINHFMTGV----GDSFQID 232 (385) Q Consensus 160 ~~Li~~qPDlGtalii~~i~~~ml~isg~~~~~l~~~~~~~~~~~~~~---~~~~~y~~~Ri~~~ldp~----~~gyQ~~ 232 (385) ..+++.|||+|||++++.+...|++++|.+++++......++...... +..+|||++|+.+|+||+ |+|||+. T Consensus 160 ~~Li~~QpDlGta~v~~~~~~~~~f~ag~~~~~i~~~~~~~~~~~~~~~~~~~~~~y~~~Ri~~fl~P~~d~~g~gyQl~ 239 (381) T COG0772 160 ALLILLQPDLGTALLLFAILLFMLFLAGLRWRWILALLVLALAGFVILILFIFLKPYQKKRVTSFLDPEADPLGSGYQLI 239 (381) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 99999098637899999999999998078299999999999999999999997239999899972682216688756999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 22222205740002254555655-55321000018888986346656799999999999999999835783078999999 Q gi|254781098|r 233 SSRDAIIHGGWFGKGPGEGVIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGL 311 (385) Q Consensus 233 qs~~Ai~sGG~~G~G~g~~~~~~-~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~ 311 (385) ||++|+++||++|+|+|++.+|. |+||+|||||||+++||+|++|+.+++.+|.++++|++++|.|++|.|+++++.|+ T Consensus 240 qS~~Aig~Gg~~G~Glg~~~~k~~~lPe~hTDFIfavi~EE~G~iG~~~ll~L~~~li~r~l~ia~~a~d~F~~lla~Gi 319 (381) T COG0772 240 QSLIAIGSGGLFGKGLGGSQQKLGYLPEAHTDFIFAVIGEEFGFIGALFLLALFFLLILRGLRIALRAKDLFGRLLAIGI 319 (381) T ss_pred HHHHHHHCCCCEEECCCCCCCCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999983785245788551245130468887432389887579999999999999999999999965456877999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 9999999999999750673577755854233958999999999999986502047765557 Q gi|254781098|r 312 ALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYEE 372 (385) Q Consensus 312 ~~~~~~q~~~ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~~~~~ 372 (385) +.++.+|+++|+||++|++|+||+||||+||||||++++++++|+++||+||++++.+.++ T Consensus 320 ~~~i~~q~fiNigm~~GllPvtGvpLPfiSYGGSSll~~~i~~Gill~i~~~~~~~~~~~~ 380 (381) T COG0772 320 ALLIFFQVFINIGMVLGLLPVTGVPLPFISYGGSSLLANSIALGILLNISRHRRRKLSREK 380 (381) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCC T ss_conf 9999999999998770667677898531486679999999999999999852335454224 No 8 >TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652. Probab=96.41 E-value=0.068 Score=30.37 Aligned_cols=180 Identities=10% Similarity=0.035 Sum_probs=77.7 Q ss_pred EEEECHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 2334669988765-555678887630364332442321002355556775310112101101222122333322222222 Q gi|254781098|r 116 GTSVQPSEFMKPS-FIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIV 194 (385) Q Consensus 116 ~~siQPSE~~Ki~-~il~lA~~l~~~~~~~~~~~~i~~~~i~~~~~~Li~~qPDlGtalii~~i~~~ml~isg~~~~~l~ 194 (385) .+==-|.|++-.. +.+=++.++.++.+ +++.+....... .++..-++....=|.-+=+.+....++.-+ +.|... T Consensus 162 s~i~dnN~lalali~~lPL~~~l~~~~~-~~w~r~~~~~~~-~~~~~aii~T~SRGgllgl~~~~~~~~~~~--~~k~~~ 237 (402) T TIGR03097 162 SFIADNNHLALALIMTLPLLRYLHLQLA-RPWQRHLLAVTM-LLTVISVLGSYSRGALLALVAMGAVLFWRS--RRKGLM 237 (402) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCHHH T ss_conf 7467853999999999899999998565-329999999999-999999998166075999999999999982--153268 Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHH-------HC-CCCCCCCCCCCCCCCC---CCCCCC-- Q ss_conf 1000011001000133331001210000447864101222222-------20-5740002254555655---553210-- Q gi|254781098|r 195 VFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDA-------II-HGGWFGKGPGEGVIKR---VIPDSH-- 261 (385) Q Consensus 195 ~~~~~~~~~~~~~~~~~~y~~~Ri~~~ldp~~~gyQ~~qs~~A-------i~-sGG~~G~G~g~~~~~~---~lPe~~-- 261 (385) ......+... .....-+--.+|.++--+.++| |..+++.. ++ +--++|.|..+..+.. |-|+.. T Consensus 238 ~~~~~~~~~~-~~~~~p~~~~~Rm~ti~~~~~D--~SA~gRi~aW~~a~~ma~~~Pl~G~G~~~~~~~~~~~~~~~~~~~ 314 (402) T TIGR03097 238 SLLGAVVLLL-GLAMMPEEWWDRMNTIQTYEED--ASAMGRINAWLLAWNLAKDRPLVGGGFEYQDEFRFSTYAPVPTNV 314 (402) T ss_pred HHHHHHHHHH-HHHHCCHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCC T ss_conf 9999999999-9997788899998877355766--028889999999999998699724344213666478824668877 Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf --00018888986346656799999999999999999835783 Q gi|254781098|r 262 --TDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESND 302 (385) Q Consensus 262 --tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~ 302 (385) +.-++=-+--|-||+|...-+++......+..++-+++++. T Consensus 315 ~a~HS~yFq~LgE~G~~Gl~lf~~l~~~~~~~~~~l~r~~~~~ 357 (402) T TIGR03097 315 HAAHSIYFQVLGEHGFVGLALFLGLLALTLLRAGWLKRHARGI 357 (402) T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3138799999872187999999999999999999999973479 No 9 >COG3307 RfaL Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane] Probab=95.22 E-value=0.22 Score=27.35 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=52.6 Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCC---------CCC------CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 101222222205740002254555---------655------553--210000188889863466567999999999999 Q gi|254781098|r 229 FQIDSSRDAIIHGGWFGKGPGEGV---------IKR------VIP--DSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVR 291 (385) Q Consensus 229 yQ~~qs~~Ai~sGG~~G~G~g~~~---------~~~------~lP--e~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r 291 (385) ..-.++..++..--++|.|+++-. +.+ ..+ .+|||++- +..|.|.+|.+..+.++.....+ T Consensus 283 ~iW~~al~~i~~~Pi~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~HN~~L~--~~~e~Gi~Gl~~~~~~~~~~~~~ 360 (424) T COG3307 283 DIWEAALEAIKERPIFGYGYGAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLE--ILLETGILGLLLLLALLLVILLL 360 (424) T ss_pred HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHH--HHHHHCHHHHHHHHHHHHHHHHH T ss_conf 9999999999968923860750256776540230311677773267787479999--99995899999999999999999 Q ss_pred HHHHHHHCC Q ss_conf 999998357 Q gi|254781098|r 292 SFLYSLVES 300 (385) Q Consensus 292 ~~~~a~~~~ 300 (385) ..+...+.+ T Consensus 361 ~~~~~~~~~ 369 (424) T COG3307 361 FLKRTRKNA 369 (424) T ss_pred HHHHHHHCC T ss_conf 999875135 No 10 >pfam04018 DUF368 Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments. Probab=87.26 E-value=2 Score=21.51 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=35.0 Q ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46168998831389999999999999999995288999860898069999999999999999999997 Q gi|254781098|r 7 RGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSL 74 (385) Q Consensus 7 ~~~l~~~~~~~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~ 74 (385) |...++.+++.|+..+..+.+=...|++.... ....-. +++ ..|......|+++.-+... T Consensus 42 ~~~~~~~~~~~~~~fLl~l~~G~~~~i~~~s~---~i~~ll--~~y---p~~~~~fF~GLIl~Si~~l 101 (250) T pfam04018 42 KFGFKAAWKHINGNFLLPLGLGILTSILSLAK---LISYLL--ENY---PVPTWSFFFGLILASIPFL 101 (250) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHH---HHHHHHHHHHHHHHHHHHH T ss_conf 77689999960579999999999999999999---999999--966---9999999999999999999 No 11 >COG1033 Predicted exporters of the RND superfamily [General function prediction only] Probab=74.90 E-value=5.8 Score=18.77 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999997506735777558542339589999999999999865 Q gi|254781098|r 316 ALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALT 361 (385) Q Consensus 316 ~~q~~~ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~ 361 (385) .+...+-++-+.|++=.+|+|+-..+. .+-+....+|+=.+|+ T Consensus 599 iipi~~~v~~~~~~M~l~gI~~~~~ta---~v~ai~lGiGvDYsIh 641 (727) T COG1033 599 LIPIAIVVGWNFGLMGLLGIPLTPATA---TLGAIILGIGVDYSIH 641 (727) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHCCCHHHHH T ss_conf 888899999999999980786207999---9879751024013458 No 12 >PRK04125 murein hydrolase regulator LrgA; Provisional Probab=73.84 E-value=4.6 Score=19.41 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 999999999999999999975067357775585423395899999999999998650204776555765 Q gi|254781098|r 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYEEDF 374 (385) Q Consensus 306 ~l~~G~~~~~~~q~~~ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~~~~~~~ 374 (385) -....--..+++++-+.+....+++-..|++ .+--==-|.+..+...|.+-.--.||+++++.++++ T Consensus 63 ~fLl~~m~lfFVPagVGim~~~~ll~~~~~~--il~i~ivSTilvm~vTG~v~Q~l~~r~~kk~~~~~e 129 (141) T PRK04125 63 TALTNNIGFLFVPSGISVINSLGVMSQYPVQ--IILVIIVATILLLACTGLFSQFILGKTEKEKEDKKE 129 (141) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 9999870798852275899999999987589--999999999999999999999999874201233678 No 13 >pfam01222 ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family. Probab=72.57 E-value=2.1 Score=21.40 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=59.3 Q ss_pred CHHHHHHHHCCCCCHH-CCCCCC--CC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 0013333100121000-044786--41-0122222220574000225455565555321000018888986346656799 Q gi|254781098|r 206 IAYQTMPHVAIRINHF-MTGVGD--SF-QIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFI 281 (385) Q Consensus 206 ~~~~~~~y~~~Ri~~~-ldp~~~--gy-Q~~qs~~Ai~sGG~~G~G~g~~~~~~~lPe~~tDfIfa~i~ee~G~ig~~~i 281 (385) ......+.|++++... .+|... .+ |+.+... +-..||+|- +...||++|----+-++..+.--..+--.-. T Consensus 313 ~ifr~sN~QK~~FR~~p~~p~~~~~~~i~T~~G~~-LL~sGwWG~----~Rh~NY~gDil~a~~w~l~~Gf~~~~Pyfy~ 387 (429) T pfam01222 313 YIFRSANSQKNNFRTNPADPKLIYLKYIQTKTGSG-LLTDGWWGF----ARHINYLGDWLQSLSWSLPTGFNSVLPYFYP 387 (429) T ss_pred EEEECCCHHHHHHCCCCCCCCCCCCCEEECCCCCE-EEEECCHHH----HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 77823261579972899997502785674389986-886031113----0145648999999999998655886789999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 99999999999999983578307899 Q gi|254781098|r 282 LCIFAFIVVRSFLYSLVESNDFIRMA 307 (385) Q Consensus 282 i~l~~~li~r~~~~a~~~~~~~~~~l 307 (385) +.+..++++|..|--.||+..||+.- T Consensus 388 i~~~~LLiHR~~RD~~rC~~KYG~~W 413 (429) T pfam01222 388 LYFAVLLVHREARDEHKCKKKYGLDW 413 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999988888999988765689 No 14 >pfam04932 Wzy_C O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL. Probab=70.96 E-value=1.4 Score=22.54 Aligned_cols=48 Identities=25% Similarity=0.213 Sum_probs=31.7 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 22222220574000225455565---555321000018888986346656799 Q gi|254781098|r 232 DSSRDAIIHGGWFGKGPGEGVIK---RVIPDSHTDFVFSVAAEEFGIIFCIFI 281 (385) Q Consensus 232 ~qs~~Ai~sGG~~G~G~g~~~~~---~~lPe~~tDfIfa~i~ee~G~ig~~~i 281 (385) .++...+.+--++|.|+|+-.+. .....+||||+ -+.-|.|++|.+.. T Consensus 92 ~~a~~~~~~~P~~G~G~g~~~~~~~~~~~~~~HN~~l--~~~~e~Gi~G~ilf 142 (143) T pfam04932 92 KSALDLIKEHPLFGYGLGTFGPLYTSGGITHAHNLYL--EILVELGIPGLLLF 142 (143) T ss_pred HHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCHHHHH--HHHHHHHHHHHHHH T ss_conf 9999999958922268662357735689899539999--99999939999998 No 15 >TIGR01722 MMSDH methylmalonate-semialdehyde dehydrogenase; InterPro: IPR010061 These proteins are involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterised in both prokaryotes , and eukaryotes , functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in Pseudomonas aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase . In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2 . The preceding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.; GO: 0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity, 0006573 valine metabolic process. Probab=63.64 E-value=2.5 Score=20.96 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCHHH Q ss_conf 999999999999975067-35777558542339589 Q gi|254781098|r 312 ALQIALQAFINIGVNLHL-LPTKGMTMPAISYGGSS 346 (385) Q Consensus 312 ~~~~~~q~~~ni~~~~gl-~P~tGi~LPFiSyGGss 346 (385) ++-=-+|--+.+|++ |+ +|+ -+||||+|++|+- T Consensus 417 aaAR~fqh~ievG~V-GvNvPI-PVPlp~fSFtGwk 450 (478) T TIGR01722 417 AAARKFQHEIEVGQV-GVNVPI-PVPLPYFSFTGWK 450 (478) T ss_pred HHHHHEEEEEEEEEE-EEEECC-CCCCCCCCCCCCC T ss_conf 212011025630135-552044-7898862455654 No 16 >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963 Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB. The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process. Probab=58.99 E-value=4.6 Score=19.40 Aligned_cols=13 Identities=46% Similarity=1.037 Sum_probs=9.9 Q ss_pred CCCCCCCCCHHHH Q ss_conf 5532100001888 Q gi|254781098|r 256 VIPDSHTDFVFSV 268 (385) Q Consensus 256 ~lPe~~tDfIfa~ 268 (385) .+|=-||||++|+ T Consensus 204 LIPRTHnDY~YSV 216 (534) T TIGR02275 204 LIPRTHNDYYYSV 216 (534) T ss_pred CCCCCCCCHHHHH T ss_conf 7888754324662 No 17 >COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism] Probab=52.13 E-value=16 Score=16.13 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=60.2 Q ss_pred CCCCCHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-C Q ss_conf 10000188------8--8986346656799999999999999999835783078999999999999999999975067-3 Q gi|254781098|r 260 SHTDFVFS------V--AAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHL-L 330 (385) Q Consensus 260 ~~tDfIfa------~--i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~~gl-~ 330 (385) .-.|-+|| + +.++...+-...++....+..........-.|.++-++.+.++..++....+.+-..-.+. + T Consensus 141 ~i~D~vFSlDSV~Aa~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~i 220 (254) T COG0861 141 ELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHI 220 (254) T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999986538999999946855999999999999999999999999986389999999999999999996010114317 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 577755854233958999999999999986502047765557 Q gi|254781098|r 331 PTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYEE 372 (385) Q Consensus 331 P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~~~~~ 372 (385) | .|..+.-.....+....++..+++++++++| T Consensus 221 p----------~~~~~~~v~f~vl~~~~~~~~~~~~~~~~~~ 252 (254) T COG0861 221 P----------KGYLYLAVGFSVLIELLNISARKKKKKKKSQ 252 (254) T ss_pred C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 8----------0689999999999999999988635301124 No 18 >MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional Probab=50.69 E-value=17 Score=16.00 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH Q ss_conf 9999999999999997-69899998433477898 Q gi|254781098|r 59 ALFLIPSVIIMISFSL-FSPKNVKNTAFILLFLS 91 (385) Q Consensus 59 ~i~~~ig~~~~~~~~~-i~~~~l~k~~~~~~~~~ 91 (385) .+|++..+...-..+. ++-+.+--.--..|.++ T Consensus 29 al~Li~~f~~~A~l~~lL~AeFLa~vqIiVYvGA 62 (184) T MTH00057 29 VLWLIVAFLSASALFILLEVEFIAFIFLIVYVGA 62 (184) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999999999999999947599999999999989 No 19 >pfam01773 Nucleos_tra2_N Na+ dependent nucleoside transporter N-terminus. This family consists of nucleoside transport proteins. Rat sodium/nucleoside cotransporter 2 is a purine-specific Na+-nucleoside cotransporter localized to the bile canalicular membrane; sodium/nucleoside cotransporter 1 is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC. This alignment covers the N terminus of this family Probab=46.28 E-value=12 Score=16.83 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 65555678887630364332442321002 Q gi|254781098|r 127 PSFIIVSAWFFAEQIRHPEIPGNIFSFIL 155 (385) Q Consensus 127 i~~il~lA~~l~~~~~~~~~~~~i~~~~i 155 (385) +..++.+|+.+|+++++.+|+.....+.+ T Consensus 3 i~~~l~ia~l~S~nRk~I~wr~V~~gl~l 31 (75) T pfam01773 3 IVVLLAIAFLLSENRKAINWRTVGGGLAL 31 (75) T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 99999999999379664768999999999 No 20 >COG4038 Predicted membrane protein [Function unknown] Probab=42.03 E-value=23 Score=15.18 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=30.4 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 357775585423395899999999999998650204776 Q gi|254781098|r 330 LPTKGMTMPAISYGGSSILGICITMGYLLALTCRRPEKR 368 (385) Q Consensus 330 ~P~tGi~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~ 368 (385) +|..|++|-|..|--.--+.+.++.+-+++..--|.--| T Consensus 40 iPtvGVSLIFLaYnh~LAL~TFIAv~a~~tLiL~RAVIr 78 (87) T COG4038 40 LPTVGVSLIFLAYNHLLALITFIAVGAFTTLILMRAVIR 78 (87) T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 774302313666777999999999999999999999999 No 21 >PRK11380 hypothetical protein; Provisional Probab=40.42 E-value=24 Score=15.03 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=7.3 Q ss_pred CCEEEECCEEEECHHH Q ss_conf 1102201023346699 Q gi|254781098|r 108 AKRWLYIAGTSVQPSE 123 (385) Q Consensus 108 a~rWI~lG~~siQPSE 123 (385) -+|....++++.-|-| T Consensus 45 Q~rYYq~~g~~~l~eE 60 (294) T PRK11380 45 QLHYYQAKGIEPLSIE 60 (294) T ss_pred HHHHHHHCCCCCCCHH T ss_conf 9999986599878888 No 22 >pfam08781 DP Transcription factor DP. DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer and negatively regulates the G1-S transition. Probab=40.37 E-value=12 Score=16.92 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=5.1 Q ss_pred CCCCCCCCCCCCC Q ss_conf 6735777558542 Q gi|254781098|r 328 HLLPTKGMTMPAI 340 (385) Q Consensus 328 gl~P~tGi~LPFi 340 (385) |-.|.+|++|||| T Consensus 48 ~~~p~~~i~LPFI 60 (141) T pfam08781 48 GNVPSSGIQLPFI 60 (141) T ss_pred CCCCCCCCCCCEE T ss_conf 8999766538878 No 23 >COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Probab=39.83 E-value=25 Score=14.97 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=22.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 1389999999999999999995288999860898069999999999999999999997698999 Q gi|254781098|r 17 VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNV 80 (385) Q Consensus 17 ~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~i~~~~l 80 (385) -|.++.+.=..|+.+|.++..|.-...-..+ ..-|=+..-++-.++|-..|...+++-|+.. T Consensus 91 tdp~lm~lDssLl~lg~~aLlsgitaff~~n--A~~~GlItlll~a~vgGfamy~my~y~yr~~ 152 (226) T COG4858 91 TDPWLMWLDSSLLFLGAMALLSGITAFFQKN--AQVYGLITLLLTAVVGGFAMYIMYYYAYRMR 152 (226) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9965888636299999999999999999628--8302179999999866699999999998762 No 24 >PRK09577 multidrug efflux protein; Reviewed Probab=39.78 E-value=10 Score=17.28 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=20.7 Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9975067357775585423395899999999999998 Q gi|254781098|r 323 IGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLA 359 (385) Q Consensus 323 i~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~ 359 (385) +|+..|+ =.||.|+-+ .+++-..+++|++.| T Consensus 904 iG~~~~l-~l~g~~ls~-----~s~iG~i~L~GIvVn 934 (1032) T PRK09577 904 IGAVLGV-TLRGMPNDI-----YFKVGLIATIGLSAK 934 (1032) T ss_pred HHHHHHH-HHHCCCHHH-----HHHHHHHHHHHHHHH T ss_conf 9999999-997788029-----999999999999994 No 25 >KOG3146 consensus Probab=37.02 E-value=28 Score=14.71 Aligned_cols=27 Identities=15% Similarity=-0.068 Sum_probs=12.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 078999999999999999999975067357 Q gi|254781098|r 303 FIRMAIFGLALQIALQAFINIGVNLHLLPT 332 (385) Q Consensus 303 ~~~~l~~G~~~~~~~q~~~ni~~~~gl~P~ 332 (385) +|..++.+.+. ..-.++|.. .+|++|. T Consensus 160 ~G~ivG~l~g~--~Wf~~v~sl-ll~~f~~ 186 (228) T KOG3146 160 VGAIVGGLVGI--LWFYLVNSL-LLGLFPW 186 (228) T ss_pred HHHHHHHHHHH--HHHHHHHHH-HHHHHHH T ss_conf 88886546778--999999889-9888799 No 26 >pfam05915 DUF872 Eukaryotic protein of unknown function (DUF872). This family consists of several uncharacterized eukaryotic proteins. The function of this family is unknown. Probab=36.65 E-value=28 Score=14.67 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=29.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 13899999999999999999952889998608980699999999999999999 Q gi|254781098|r 17 VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIM 69 (385) Q Consensus 17 ~D~~ll~~v~~L~~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~ 69 (385) -+|.-+.+..+|..+|.+++.-++...+.....+. .+...++++|++.+ T Consensus 36 ~n~kaI~lA~~Lli~G~~Ll~~g~~~~~~~~~~~~----~~~~~~l~lG~l~f 84 (112) T pfam05915 36 KNWKVIAAALILLLLGAVLLVIGLFIFANPMEGDA----SQGYVFLFLGILLF 84 (112) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCHHHHHHHHHHHH T ss_conf 20899999999999999999999999615668887----50038799899982 No 27 >PRK10352 nickel transporter permease NikB; Provisional Probab=35.91 E-value=29 Score=14.60 Aligned_cols=14 Identities=7% Similarity=-0.216 Sum_probs=7.3 Q ss_pred HCCHHHHHHHHHHH Q ss_conf 76989999843347 Q gi|254781098|r 74 LFSPKNVKNTAFIL 87 (385) Q Consensus 74 ~i~~~~l~k~~~~~ 87 (385) -+|.-.+.+|..++ T Consensus 59 GLd~Pl~~qy~~wl 72 (314) T PRK10352 59 GLDQPLYVQYGTWL 72 (314) T ss_pred CCCCCHHHHHHHHH T ss_conf 89997889999999 No 28 >pfam02118 Srg Srg family chemoreceptor. Probab=35.11 E-value=22 Score=15.34 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999997 Q gi|254781098|r 58 HALFLIPSVIIMISFSL 74 (385) Q Consensus 58 q~i~~~ig~~~~~~~~~ 74 (385) |+.+.+.+++++..+.. T Consensus 4 ql~Y~ips~~L~~~~~~ 20 (275) T pfam02118 4 QLSYGIPSFILMIFILI 20 (275) T ss_pred EEHHHHHHHHHHHHHHH T ss_conf 60289899999999999 No 29 >pfam01034 Syndecan Syndecan domain. Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Probab=32.77 E-value=33 Score=14.29 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=17.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 0018888986346656799999999999999999835783 Q gi|254781098|r 263 DFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESND 302 (385) Q Consensus 263 DfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~ 302 (385) ...-++|+ -|.+|.++.++|.+++++|+ |.||. T Consensus 151 ~~l~~~i~--~~~~~~~~a~~l~~~~~yr~-----~kkde 183 (207) T pfam01034 151 EVLAAVIA--GGVVGLLFAVFLVMFLVYRM-----KKKDE 183 (207) T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHCCC T ss_conf 37899885--12899999999999999864-----30456 No 30 >pfam03699 UPF0182 Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins. Probab=32.22 E-value=33 Score=14.24 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=7.3 Q ss_pred CHHHHHHHHHHHHHCC Q ss_conf 0477655576543003 Q gi|254781098|r 364 RPEKRAYEEDFMHTSI 379 (385) Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (385) ++.+.++|+++.+..+ T Consensus 300 ~PnE~~~E~pYI~rnI 315 (771) T pfam03699 300 KPNELELERPYIERNI 315 (771) T ss_pred CCCHHHHHHHHHHHHH T ss_conf 8873553466999999 No 31 >PRK11056 hypothetical protein; Provisional Probab=29.64 E-value=16 Score=16.18 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=8.9 Q ss_pred HCCCCCCHHHCCCCCCCCCC Q ss_conf 10112101101222122333 Q gi|254781098|r 166 QPDFGQSILVSLIWDCMFFI 185 (385) Q Consensus 166 qPDlGtalii~~i~~~ml~i 185 (385) -||+|+-..=..+.+++.++ T Consensus 87 yPe~GSNF~~~il~l~L~~W 106 (120) T PRK11056 87 YPEIGSNFFPAVLSVILVFW 106 (120) T ss_pred CCCCCCCHHHHHHHHHHHHH T ss_conf 71112435899999999999 No 32 >PRK01658 holin-like protein; Validated Probab=29.19 E-value=37 Score=13.92 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHH---CCHHHHHHHHHH Q ss_conf 999999999997---698999984334 Q gi|254781098|r 63 IPSVIIMISFSL---FSPKNVKNTAFI 86 (385) Q Consensus 63 ~ig~~~~~~~~~---i~~~~l~k~~~~ 86 (385) ++|..+++.... ++.+++++-+.+ T Consensus 35 ViGm~LLf~~L~~~~ik~~~v~~~a~~ 61 (122) T PRK01658 35 IIGIFLLFLLLSFKILKLKWIELGAEF 61 (122) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999999789569999999999 No 33 >COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only] Probab=28.62 E-value=38 Score=13.86 Aligned_cols=45 Identities=24% Similarity=0.421 Sum_probs=22.7 Q ss_pred HHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999995288999860898069999999999999999999997 Q gi|254781098|r 30 GLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSL 74 (385) Q Consensus 30 ~iGlv~i~Sas~~~~~~~~~~~~~~~~kq~i~~~ig~~~~~~~~~ 74 (385) .+|...=|+..+......+..+..+.+.+..-..+|-+.|++++. T Consensus 12 i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~ 56 (356) T COG4956 12 IIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISF 56 (356) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHH T ss_conf 997566674289998626866411213187999999999999999 No 34 >KOG1435 consensus Probab=27.84 E-value=35 Score=14.13 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=44.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 7400022545556555532100001888898634665679999999999999999983578307899999 Q gi|254781098|r 241 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFG 310 (385) Q Consensus 241 GG~~G~G~g~~~~~~~lPe~~tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G 310 (385) .||+|. ..+.||++|.-.-..+|..+-==-.+.-.-++....++++|..|--.||+..||+...-- T Consensus 350 SGwWG~----aRh~nY~gD~i~alawslp~gf~s~lpyfy~iyf~~LLvhR~~RDe~rC~~KYG~~W~~Y 415 (428) T KOG1435 350 SGWWGV----ARHPNYLGDLIMALAWSLPCGFNSPLPYFYPIYFTLLLVHRAARDEHRCRSKYGEDWEEY 415 (428) T ss_pred ECHHHH----HCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 032143----217571899999999998505898750599999999999898625778899873369999 No 35 >pfam02517 Abi CAAX amino terminal protease family. Members of this family are probably proteases (after a prenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. Probab=27.73 E-value=40 Score=13.77 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=38.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 00018888986346656799999999999999999835783078999999999999999999975067357775585423 Q gi|254781098|r 262 TDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAIS 341 (385) Q Consensus 262 tDfIfa~i~ee~G~ig~~~ii~l~~~li~r~~~~a~~~~~~~~~~l~~G~~~~~~~q~~~ni~~~~gl~P~tGi~LPFiS 341 (385) .+.+.+.+.||+.|-|.+. .+.++.+++..+.-+...+. ...|+. -. T Consensus 5 ~~~~~~~~~EEl~fRg~l~----------------~~~~~~~~~~~~~iis~~lf--~l~H~~---------------~~ 51 (96) T pfam02517 5 LLVLIAPIAEELLFRGFLL----------------PRLLKKLGPWLAILISSLLF--GLLHLF---------------NL 51 (96) T ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHHHHCCCHHHHHHHHHHH--HHHHHC---------------CC T ss_conf 8999879999999999999----------------99997859469999999999--999943---------------01 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 39589999999999999865020 Q gi|254781098|r 342 YGGSSILGICITMGYLLALTCRR 364 (385) Q Consensus 342 yGGssll~~~~~~Gi~l~i~~~~ 364 (385) +.+..........|++.+....| T Consensus 52 ~~~~~~~~~~~~~g~~~~~~~~~ 74 (96) T pfam02517 52 GGGLLAFLLTFILGLLLGYLYLR 74 (96) T ss_pred CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 23699999999999999999999 No 36 >pfam00771 FHIPEP FHIPEP family. Probab=27.53 E-value=25 Score=14.94 Aligned_cols=16 Identities=38% Similarity=0.629 Sum_probs=6.5 Q ss_pred HHHCCCCCCCCCC-CCCCC Q ss_conf 9750673577755-85423 Q gi|254781098|r 324 GVNLHLLPTKGMT-MPAIS 341 (385) Q Consensus 324 ~~~~gl~P~tGi~-LPFiS 341 (385) ...+|++| |.| +||+. T Consensus 267 l~~lglvP--G~P~~~Fl~ 283 (658) T pfam00771 267 LLLLGLVP--GMPTLPFLL 283 (658) T ss_pred HHHHHHCC--CCCHHHHHH T ss_conf 99998647--980679999 No 37 >TIGR00783 ccs citrate carrier protein, CCS family; InterPro: IPR004679 Proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters . Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ , while another has been shown to be an Na+-dependent malate cotransporter .; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane. Probab=27.03 E-value=41 Score=13.69 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=13.2 Q ss_pred CHHHHHH-HHHHHHHH--HHHHHHHHHHH Q ss_conf 0188889-86346656--79999999999 Q gi|254781098|r 264 FVFSVAA-EEFGIIFC--IFILCIFAFIV 289 (385) Q Consensus 264 fIfa~i~-ee~G~ig~--~~ii~l~~~li 289 (385) |+.--+- |+|..+-+ -+.+.+...++ T Consensus 271 ~~~G~lLN~~f~gi~~HY~~~Mil~~~~l 299 (429) T TIGR00783 271 FIAGGLLNKSFPGIPAHYYALMILIVALL 299 (429) T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99867622125887528999999999999 No 38 >PRK09579 multidrug efflux protein; Reviewed Probab=26.65 E-value=42 Score=13.65 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=20.9 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99975067357775585423395899999999999998 Q gi|254781098|r 322 NIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLA 359 (385) Q Consensus 322 ni~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~ 359 (385) =+|+..|++ +||.|+=+ .|++-..+++|++.| T Consensus 882 ~iG~~lgl~-l~g~~l~~-----~s~iG~i~L~GIvvn 913 (1017) T PRK09579 882 ICGALVPLF-LGVSSMNI-----YTQVGLVTLIGLISK 913 (1017) T ss_pred HHHHHHHHH-HHCCCHHH-----HHHHHHHHHHHHHHH T ss_conf 999999999-97688369-----999999999999996 No 39 >pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function. Probab=26.19 E-value=42 Score=13.60 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=23.7 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89988313899999999999999999952 Q gi|254781098|r 11 AEWFWTVDWFSLIAFLFLLGLGLMLSFAS 39 (385) Q Consensus 11 ~~~~~~~D~~ll~~v~~L~~iGlv~i~Sa 39 (385) .-|..-+|-.|++..+.....|+...+|. T Consensus 75 ~~w~~alD~~Ll~~~if~~m~Gi~~~Fs~ 103 (206) T pfam06570 75 NPWLMALDNSLLFLGIFALMNGIMALFSK 103 (206) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 45899999828999999999999999478 No 40 >PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed Probab=26.04 E-value=31 Score=14.43 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=12.2 Q ss_pred HHHHCCCCCCCCCC-CCCCCCCH Q ss_conf 99750673577755-85423395 Q gi|254781098|r 323 IGVNLHLLPTKGMT-MPAISYGG 344 (385) Q Consensus 323 i~~~~gl~P~tGi~-LPFiSyGG 344 (385) +....|++| |.| +||+.-+. T Consensus 294 ~l~~lglvP--G~P~~~Fl~la~ 314 (694) T PRK12792 294 LMFVLAIVP--GLPFLPFALLGG 314 (694) T ss_pred HHHHHHHCC--CCCHHHHHHHHH T ss_conf 999998367--981679999999 No 41 >KOG2438 consensus Probab=25.41 E-value=28 Score=14.70 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=18.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0188889863466567999999999999999 Q gi|254781098|r 264 FVFSVAAEEFGIIFCIFILCIFAFIVVRSFL 294 (385) Q Consensus 264 fIfa~i~ee~G~ig~~~ii~l~~~li~r~~~ 294 (385) =.+-.+.|.+|+-.--.+.++.-.=....++ T Consensus 322 ~~~~~L~e~~gl~~k~a~~L~~~~~~~~~~~ 352 (505) T KOG2438 322 ATREKLVEQYGLSAKDAVTLANEVELLEFYK 352 (505) T ss_pred HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH T ss_conf 8999998862665455345543556888876 No 42 >KOG0182 consensus Probab=24.14 E-value=28 Score=14.68 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=26.8 Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 0121000044786410122222220574000225 Q gi|254781098|r 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGP 248 (385) Q Consensus 215 ~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG~~G~G~ 248 (385) .+|-..-++|.|.=||+..+..|+.++|+.-.+. T Consensus 9 fDrhitIFspeGrLyQVEYafkAin~~gltsVav 42 (246) T KOG0182 9 FDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAV 42 (246) T ss_pred CCCEEEEECCCCEEEEEEHHHHHHHCCCCCEEEE T ss_conf 5404888778862775314777752279715887 No 43 >KOG1690 consensus Probab=24.01 E-value=46 Score=13.37 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=7.7 Q ss_pred HCCCHHHHHHHHHHHHHCCCCC Q ss_conf 5020477655576543003467 Q gi|254781098|r 361 TCRRPEKRAYEEDFMHTSISHS 382 (385) Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~ 382 (385) -+.++..|..|+.+++.|-|.+ T Consensus 159 rkEQ~~~R~RE~~FR~tSES~N 180 (215) T KOG1690 159 RKEQNLQREREETFRDTSESAN 180 (215) T ss_pred HHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999888888989874035423 No 44 >pfam07226 DUF1422 Protein of unknown function (DUF1422). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown. Probab=23.09 E-value=26 Score=14.87 Aligned_cols=19 Identities=16% Similarity=0.474 Sum_probs=8.5 Q ss_pred HCCCCCCHHHCCCCCCCCC Q ss_conf 1011210110122212233 Q gi|254781098|r 166 QPDFGQSILVSLIWDCMFF 184 (385) Q Consensus 166 qPDlGtalii~~i~~~ml~ 184 (385) -||+|+-.+=..+.+++.+ T Consensus 87 yPeiGSNF~p~il~l~L~~ 105 (118) T pfam07226 87 YPEIGSNFFPLILSLALLF 105 (118) T ss_pred CCCCCCCHHHHHHHHHHHH T ss_conf 7343242699999999999 No 45 >TIGR01103 fliP flagellar biosynthetic protein FliP; InterPro: IPR005837 This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes within the motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. In Escherichia coli and related proteins the fliP protein probably plays a role in the transport of flagellar proteins. FliP is a protein of about 30 Kd which contains three or four transmembrane regions. Proteins evolutionary related to fliP have been found in a wide range of bacteria (mopC, hrcR, hrpW, spaP, yscR, etc.) and are involved in a variety of signal-peptide independent secretion systems. ; GO: 0009306 protein secretion, 0016020 membrane. Probab=22.68 E-value=34 Score=14.20 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=15.3 Q ss_pred HHHHHHCCC--CCCCCCCCCC Q ss_conf 999975067--3577755854 Q gi|254781098|r 321 INIGVNLHL--LPTKGMTMPA 339 (385) Q Consensus 321 ~ni~~~~gl--~P~tGi~LPF 339 (385) =.+.|+.|. +|.+-|+||| T Consensus 160 ASvLMaMGMmMLPP~~ISLPF 180 (202) T TIGR01103 160 ASVLMAMGMMMLPPVSISLPF 180 (202) T ss_pred HHHHHHCCCCCCCCCHHHHHH T ss_conf 999974224045731033006 No 46 >PRK06569 F0F1 ATP synthase subunit B'; Validated Probab=21.39 E-value=53 Score=13.04 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999999999999999999997 Q gi|254781098|r 52 FYFVKRHALFLIPSVIIMISFSL 74 (385) Q Consensus 52 ~~~~~kq~i~~~ig~~~~~~~~~ 74 (385) ..++..|++|+++.+++++++.. T Consensus 6 ~~~~~sQifWL~itF~~ly~~~s 28 (157) T PRK06569 6 IATYYSQIFWLIVTFGLLYIFVY 28 (157) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 22408999999999999999999 No 47 >PTZ00246 proteasome subunit alpha; Provisional Probab=21.39 E-value=39 Score=13.80 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=23.6 Q ss_pred HHCCCCCHHCCCCCCCCHHHHHHHHHCCCCCC Q ss_conf 10012100004478641012222222057400 Q gi|254781098|r 213 HVAIRINHFMTGVGDSFQIDSSRDAIIHGGWF 244 (385) Q Consensus 213 y~~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG~~ 244 (385) ++..|=.+-++|.|.=||+..+..|+.+|+.. T Consensus 3 ~~yD~~~t~FSpdGrl~QVEYA~kAv~~g~tt 34 (253) T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLT 34 (253) T ss_pred CCCCCCCCEECCCCEEHHHHHHHHHHHCCCCE T ss_conf 64479977799997676999999999646978 No 48 >PRK09174 F0F1 ATP synthase subunit B'; Validated Probab=21.23 E-value=53 Score=13.02 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254781098|r 55 VKRHALFLIPSVIIMIS 71 (385) Q Consensus 55 ~~kq~i~~~ig~~~~~~ 71 (385) +..|++|+++.++++++ T Consensus 52 ~~sQifWL~I~F~~lY~ 68 (204) T PRK09174 52 YASQLLWLAITFGLFYL 68 (204) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 08999999999999999 No 49 >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Probab=21.12 E-value=27 Score=14.73 Aligned_cols=19 Identities=37% Similarity=0.460 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999952 Q gi|254781098|r 21 SLIAFLFLLGLGLMLSFAS 39 (385) Q Consensus 21 ll~~v~~L~~iGlv~i~Sa 39 (385) +..+.++|+-.|+..+... T Consensus 91 f~~~~FALlrlGv~PVlAL 109 (542) T COG1021 91 FYITFFALLRLGVAPVLAL 109 (542) T ss_pred HHHHHHHHHHCCCCHHHCC T ss_conf 9999999997375001116 No 50 >PRK10555 aminoglycoside/multidrug efflux system; Provisional Probab=20.87 E-value=9.2 Score=17.57 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=20.2 Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9975067357775585423395899999999999998 Q gi|254781098|r 323 IGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLA 359 (385) Q Consensus 323 i~~~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi~l~ 359 (385) +|+..|+ =.||.|+=+ .|++-...++|++.| T Consensus 908 iG~~l~l-~l~g~~l~~-----~s~iG~i~L~GIvVn 938 (1037) T PRK10555 908 IGALLAT-WMRGLENDV-----YFQVGLLTVIGLSAK 938 (1037) T ss_pred HHHHHHH-HHHCCCHHH-----HHHHHHHHHHHHHHH T ss_conf 9999999-998688259-----999999999999983 No 51 >KOG0860 consensus Probab=20.67 E-value=55 Score=12.95 Aligned_cols=22 Identities=9% Similarity=0.401 Sum_probs=7.6 Q ss_pred HHHHCCHHHHHHHHHHHHHHHH Q ss_conf 9883138999999999999999 Q gi|254781098|r 13 WFWTVDWFSLIAFLFLLGLGLM 34 (385) Q Consensus 13 ~~~~~D~~ll~~v~~L~~iGlv 34 (385) ||+++.+.+++.+.+...+.++ T Consensus 88 wWkn~Km~~il~~v~~i~l~ii 109 (116) T KOG0860 88 WWKNCKMRIILGLVIIILLVVI 109 (116) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998789999999999999999 No 52 >PRK10999 malF maltose transporter membrane protein; Provisional Probab=20.65 E-value=55 Score=12.94 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=18.7 Q ss_pred HHHHHH--CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 899883--1389999999999999999995 Q gi|254781098|r 11 AEWFWT--VDWFSLIAFLFLLGLGLMLSFA 38 (385) Q Consensus 11 ~~~~~~--~D~~ll~~v~~L~~iGlv~i~S 38 (385) ..||++ +.|.++..+-++.+.+++.+|+ T Consensus 10 ~~~~~~~~lK~~llglv~a~~~y~v~~l~~ 39 (520) T PRK10999 10 KHWWQSDALKWSVLGLLGLLVGYLVVLMYA 39 (520) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 028999999999999999999999999997 No 53 >TIGR02896 spore_III_AF stage III sporulation protein AF; InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved. . Probab=20.36 E-value=55 Score=12.91 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9769899998433477898776542032223 Q gi|254781098|r 73 SLFSPKNVKNTAFILLFLSLIAMFLTLFWGV 103 (385) Q Consensus 73 ~~i~~~~l~k~~~~~~~~~l~lLilv~~~G~ 103 (385) ..+|-..++||++....+-+++.++.|+++- T Consensus 22 ~LLP~~~lkKYvk~v~GL~L~~viL~Pi~~L 52 (113) T TIGR02896 22 MLLPNSSLKKYVKFVVGLILIVVILNPILKL 52 (113) T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9767998517999999999999999899999 No 54 >cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Probab=20.23 E-value=46 Score=13.41 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.9 Q ss_pred HCCCCCHHCCCCCCCCHHHHHHHHHCCCC Q ss_conf 00121000044786410122222220574 Q gi|254781098|r 214 VAIRINHFMTGVGDSFQIDSSRDAIIHGG 242 (385) Q Consensus 214 ~~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG 242 (385) +..|=.+-++|.|.=+|++.++.|+.+|+ T Consensus 2 ~yD~~~t~Fsp~Grl~QvEYA~kAv~~G~ 30 (213) T cd03752 2 RYDSRTTIFSPEGRLYQVEYAMEAISHAG 30 (213) T ss_pred CCCCCCCEECCCCEEHHHHHHHHHHHCCC T ss_conf 87899756999976719999999996479 Done!