Query gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 385
No_of_seqs 166 out of 4269
Neff 7.5
Searched_HMMs 13730
Date Wed Jun 1 11:42:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781098.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 79.8 0.65 4.7E-05 21.8 3.0 17 171-187 146-162 (199)
2 d1iwga8 f.35.1.1 (A:513-566,A: 43.5 5 0.00036 16.4 1.7 20 61-80 62-81 (222)
3 d2azea1 e.63.1.1 (A:199-346) T 31.1 4.8 0.00035 16.5 0.0 14 255-268 126-139 (148)
4 d2gdwa1 a.28.1.2 (A:8-83) Pept 22.9 17 0.0012 13.3 1.5 24 327-351 20-43 (76)
5 d1iruf_ d.153.1.4 (F:) Proteas 21.2 15 0.0011 13.5 1.1 29 216-244 4-32 (238)
6 d1rypb_ d.153.1.4 (B:) Proteas 18.4 20 0.0015 12.8 1.2 28 215-242 5-32 (250)
7 d1iruc_ d.153.1.4 (C:) Proteas 18.2 22 0.0016 12.6 1.5 21 222-242 11-31 (250)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 16.5 24 0.0017 12.4 2.2 22 17-38 3-24 (248)
9 d1irua_ d.153.1.4 (A:) Proteas 15.1 26 0.0019 12.1 1.2 27 216-242 9-35 (244)
10 d1irud_ d.153.1.4 (D:) Proteas 14.3 27 0.002 12.0 1.2 27 216-242 3-29 (243)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=79.81 E-value=0.65 Score=21.76 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=5.8
Q ss_pred CCHHHCCCCCCCCCCCC
Q ss_conf 10110122212233332
Q gi|254781098|r 171 QSILVSLIWDCMFFITG 187 (385)
Q Consensus 171 talii~~i~~~ml~isg 187 (385)
+++.....+..+.+..+
T Consensus 146 s~lTt~~~f~~l~~~~~ 162 (199)
T d1iwga7 146 IAMVLSAVFVPMAFFGG 162 (199)
T ss_dssp HHHHHHHHHTTTTCCCT
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999998898830788
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=43.54 E-value=5 Score=16.44 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999997698999
Q gi|254781098|r 61 FLIPSVIIMISFSLFSPKNV 80 (385)
Q Consensus 61 ~~~ig~~~~~~~~~i~~~~l 80 (385)
-..+++++.+.+..+-++.+
T Consensus 62 ~~~la~i~i~liL~~~frS~ 81 (222)
T d1iwga8 62 LYAISLIVVFLCLAALYESW 81 (222)
T ss_dssp HHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99998998799999998259
No 3
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.14 E-value=4.8 Score=16.53 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=6.5
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 55532100001888
Q gi|254781098|r 255 RVIPDSHTDFVFSV 268 (385)
Q Consensus 255 ~~lPe~~tDfIfa~ 268 (385)
..+|-+.-+|+=..
T Consensus 126 ~~vP~~l~~yv~~~ 139 (148)
T d2azea1 126 SLVPKALEPYVTEM 139 (148)
T ss_dssp HTSCGGGHHHHHHH
T ss_pred HHCCHHHHHHHHHH
T ss_conf 76775178999998
No 4
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=22.85 E-value=17 Score=13.29 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0673577755854233958999999
Q gi|254781098|r 327 LHLLPTKGMTMPAISYGGSSILGIC 351 (385)
Q Consensus 327 ~gl~P~tGi~LPFiSyGGssll~~~ 351 (385)
+|. |..+..=+|+.+||+|+.+.-
T Consensus 20 L~~-~~i~~~~~f~~lG~dSl~a~~ 43 (76)
T d2gdwa1 20 LGV-SGIGILDNFFQIGGHSLKAMA 43 (76)
T ss_dssp TTS-SCCCTTTTSSTTTCTTHHHHH
T ss_pred CCC-CCCCCCCCHHHCCCCHHHHHH
T ss_conf 399-987999897771897388999
No 5
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.21 E-value=15 Score=13.50 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=21.3
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 12100004478641012222222057400
Q gi|254781098|r 216 IRINHFMTGVGDSFQIDSSRDAIIHGGWF 244 (385)
Q Consensus 216 ~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG~~ 244 (385)
.|-.+-++|.|.-+|+..++.|+.+|+-.
T Consensus 4 d~~~tiFsp~Grl~QvEYA~kav~~G~t~ 32 (238)
T d1iruf_ 4 DNDVTVWSPQGRIHQIEYAMEAVKQGSAT 32 (238)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHHHHHSCCE
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 78970699998162999899999668878
No 6
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.40 E-value=20 Score=12.83 Aligned_cols=28 Identities=21% Similarity=0.027 Sum_probs=19.5
Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 0121000044786410122222220574
Q gi|254781098|r 215 AIRINHFMTGVGDSFQIDSSRDAIIHGG 242 (385)
Q Consensus 215 ~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG 242 (385)
.+|-.+-++|.|.=+|+..++.|+.+|+
T Consensus 5 yd~~~t~fsp~G~l~QvEyA~kav~~G~ 32 (250)
T d1rypb_ 5 YSFSLTTFSPSGKLGQIDYALTAVKQGV 32 (250)
T ss_dssp CCSBSSCBCTTSCBHHHHHHHHHHHTSC
T ss_pred CCCCCCEECCCCEEHHHHHHHHHHHCCC
T ss_conf 3699715999981559998999997698
No 7
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.23 E-value=22 Score=12.62 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=8.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCC
Q ss_conf 044786410122222220574
Q gi|254781098|r 222 MTGVGDSFQIDSSRDAIIHGG 242 (385)
Q Consensus 222 ldp~~~gyQ~~qs~~Ai~sGG 242 (385)
++|.|.=||+..++.|+.+|+
T Consensus 11 fsp~Grl~QvEyA~kav~~G~ 31 (250)
T d1iruc_ 11 FSPEGRLYQVEYAMEAIGHAG 31 (250)
T ss_dssp CCTTSCCHHHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHHHHCCC
T ss_conf 999982619988999996688
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=16.55 E-value=24 Score=12.38 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1389999999999999999995
Q gi|254781098|r 17 VDWFSLIAFLFLLGLGLMLSFA 38 (385)
Q Consensus 17 ~D~~ll~~v~~L~~iGlv~i~S 38 (385)
+.|.++.++-++.+......|+
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~ 24 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYA 24 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998
No 9
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.06 E-value=26 Score=12.15 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 121000044786410122222220574
Q gi|254781098|r 216 IRINHFMTGVGDSFQIDSSRDAIIHGG 242 (385)
Q Consensus 216 ~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG 242 (385)
++-.+-++|.|.-+|+..++.|+.+||
T Consensus 9 d~~~t~Fsp~Grl~QvEYA~kav~~gg 35 (244)
T d1irua_ 9 DRHITIFSPEGRLYQVEYAFKAINQGG 35 (244)
T ss_dssp TTTSSCCCTTSCCHHHHHHHHHHHTTC
T ss_pred CCCCCEECCCCEEHHHHHHHHHHHHCC
T ss_conf 899866999983739988999998379
No 10
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.32 E-value=27 Score=12.02 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=0.0
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 121000044786410122222220574
Q gi|254781098|r 216 IRINHFMTGVGDSFQIDSSRDAIIHGG 242 (385)
Q Consensus 216 ~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG 242 (385)
.|-.+-++|.|.-||+..++.|+.+|+
T Consensus 3 d~~~t~Fsp~Grl~QvEya~kav~~G~ 29 (243)
T d1irud_ 3 DRAITVFSPDGHLFQVEYAQEAVKKGS 29 (243)
T ss_dssp CCCCSCCCTTSCCHHHHHHHHHHHTSC
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899802999981639998999996688
Done!