RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
(385 letters)
>gnl|CDD|31115 COG0772, FtsW, Bacterial cell division membrane protein [Cell
division and chromosome partitioning].
Length = 381
Score = 240 bits (613), Expect = 6e-64
Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 16/381 (4%)
Query: 6 ERGILAEWFWT-VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIP 64
R ++ +W +D L+ L L +GL++ +++S +VAE+ G FYF+ R ++L+
Sbjct: 2 LRKMVKKWLKRLIDRLLLLLLLLLAAIGLVMVYSASSAVAERRG--PFYFLIRQLVWLLL 59
Query: 65 SVIIMISFSLFSPKNV---KNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQP 121
+I+ + L P ++ A +L + L+ + L LF+G + GAKRW+ + G S+QP
Sbjct: 60 GLILALLVILRLPLRFLRKRSFAILLYVIILLLLVLVLFFGSSVNGAKRWIALGGLSIQP 119
Query: 122 SEFMKPSFIIVSAWFFAEQIRHPEIPGNIF--SFILFGIVIALLIAQPDFGQSILVSLIW 179
SEF K + I+ A + + + + +F +L + L++ QPD G ++L+ I
Sbjct: 120 SEFAKIALILYLAAYLSRKGDEIKSFLRLFLKLILLVALPALLILLQPDLGTALLLFAIL 179
Query: 180 DCMFFITGISWLWIVVFAFLGLMSLFIA---YQTMPHVAIRINHFMTG----VGDSFQID 232
M F+ G+ W WI+ L L I P+ R+ F+ +G +Q+
Sbjct: 180 LFMLFLAGLRWRWILALLVLALAGFVILILFIFLKPYQKKRVTSFLDPEADPLGSGYQLI 239
Query: 233 SSRDAIIHGGWFGKGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVR 291
S AI GG FGKG G K +P++HTDF+F+V EEFG I +F+L +F +++R
Sbjct: 240 QSLIAIGSGGLFGKGLGGSQQKLGYLPEAHTDFIFAVIGEEFGFIGALFLLALFFLLILR 299
Query: 292 SFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGIC 351
+L + F R+ G+AL I Q FINIG+ L LLP G+ +P ISYGGSS+L
Sbjct: 300 GLRIALRAKDLFGRLLAIGIALLIFFQVFINIGMVLGLLPVTGVPLPFISYGGSSLLANS 359
Query: 352 ITMGYLLALTCRRPEKRAYEE 372
I +G LL ++ R K + E+
Sbjct: 360 IALGILLNISRHRRRKLSREK 380
>gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry
includes the following members; FtsW, RodA, SpoVE.
Length = 356
Score = 197 bits (504), Expect = 3e-51
Identities = 109/348 (31%), Positives = 180/348 (51%), Gaps = 7/348 (2%)
Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77
I L L LGL++ +++S + L + F+F KR ++L+ II +
Sbjct: 1 RTLLFILLLLLGFLGLVMIYSASGVTSLVLFGDPFFFFKRQLVYLLLGFIIFVVLLRIPL 60
Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFF 137
+ ++ AF L + L+ + L G + GAKRW+ + G S+QPSEF K + I+ A +
Sbjct: 61 RFLRKWAFYLFIIGLLLLVLVFVIGPSVNGAKRWIRLGGFSIQPSEFAKIALILFLAAYL 120
Query: 138 AEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVV 195
+ + + G + ++ I+ L++ QPD G ++L+ +I M F+ G+ W +
Sbjct: 121 GRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAGLPWKLFLG 180
Query: 196 FAFLGLMSLFIAYQTMPHVAIRI----NHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEG 251
+G+ + P+ R+ + F +G +QI S AI GG FGKG G
Sbjct: 181 IVGIGVSPIVTLILLEPYQIKRVTSFLDPFKDPLGSGYQIIQSLIAIGSGGIFGKGLGNS 240
Query: 252 VIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFG 310
K +P++HTDF+F+V EE G I + +L +F ++ R F + + F R+ G
Sbjct: 241 QQKLGYLPEAHTDFIFAVIGEELGFIGALLLLALFFLLIYRGFRIARKAKDRFGRLLAVG 300
Query: 311 LALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358
++L I +Q+FINIG+ LLP G+ +P SYGGSS+L I +G LL
Sbjct: 301 ISLLIFIQSFINIGMVSGLLPVTGLPLPFFSYGGSSLLANLILIGILL 348
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 32.1 bits (73), Expect = 0.24
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 109 KRWLYIAGTSVQPSEFM-KPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQP 167
K W IA + K +WF ++ + + L ++AL
Sbjct: 117 KLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT--- 173
Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHF 221
+ ++ D + S L ++ L L +LF A + I H
Sbjct: 174 ----PLFSQIVIDKVLPDASRSTLTVLAIGLL-LAALFEALLRLLR-TYLIAHL 221
>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
(LTRPC family) [Inorganic ion transport and metabolism,
Signal transduction mechanisms].
Length = 1381
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 13 WFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAE 45
W + S IAFL L L++ F SPS+ E
Sbjct: 796 WLNVL---SYIAFLLLFTYVLLVDFQPSPSMWE 825
>gnl|CDD|40019 KOG4822, KOG4822, KOG4822, Predicted nuclear membrane protein
involved in mRNA transport and sex determination via
splicing modulation [RNA processing and modification,
Signal transduction mechanisms].
Length = 1906
Score = 29.3 bits (65), Expect = 1.8
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 179 WDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238
W C F+ +GI + + G + L A +MP + ++ M + I + +
Sbjct: 458 WTCPFYSSGIDSHILALLKERGFLPLSAALLSMPELHSKVGDIMVFTDIAMFIGNIILSF 517
Query: 239 IH 240
+
Sbjct: 518 MF 519
>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2
domain and Transmembrane region Proteins (MCTP). MCTPs
are involved in Ca2+ signaling at the membrane. MCTP is
composed of a variable N-terminal sequence, three C2
domains, two transmembrane regions (TMRs), and a short
C-terminal sequence. It is one of four protein classes
that are anchored to membranes via a transmembrane
region; the others being synaptotagmins, extended
synaptotagmins, and ferlins. MCTPs are the only
membrane-bound C2 domain proteins that contain two
functional TMRs. MCTPs are unique in that they bind Ca2+
but not phospholipids. C2 domains fold into an 8-standed
beta-sandwich that can adopt 2 structural arrangements:
Type I and Type II, distinguished by a circular
permutation involving their N- and C-terminal beta
strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-II topology.
Length = 121
Score = 28.8 bits (65), Expect = 2.4
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 277 FCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLA 312
F + I + + ++ F Y ++DF+ A L+
Sbjct: 52 FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLS 87
>gnl|CDD|31460 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.8 bits (64), Expect = 2.4
Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 50/218 (22%)
Query: 14 FWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFS 73
+ +D +A F L G+M GL L + S++++ F
Sbjct: 355 YGEIDPTPFLALFFPLFFGIMFGDLGY-------GL----------LLFLISLLLLRYFK 397
Query: 74 LFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV-----------QPS 122
P+ +K ILL+L + + +G E G L + S
Sbjct: 398 KRLPEGLKKLGKILLYLGISTIIWGFLYG-EFFGPAVLLSTLPIGLLFVYHGLDEGLLFS 456
Query: 123 EFMKPSFIIVSA-------WFFAEQIRHPE-----IPGNIFSFILFGI---VIALLIAQP 167
+ S +I F ++R + +P ++ I+ G+ ++ + P
Sbjct: 457 NILILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVP 516
Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLF 205
+ + MF GI L +V + +
Sbjct: 517 ELLGMVGA------MFGAFGILGLLVVGLILVPGLVAI 548
>gnl|CDD|37335 KOG2124, KOG2124, KOG2124, Glycosylphosphatidylinositol anchor
synthesis protein [Signal transduction mechanisms].
Length = 883
Score = 27.2 bits (60), Expect = 9.0
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 62 LIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV 119
LIP +++M +F ++ I L LI+ ++L + ++ WL I GTS+
Sbjct: 791 LIPFILVMSAFGALVKFLRQSIQTIFFLLLLISDIMSLNFFFLVRDEGSWLDI-GTSI 847
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.332 0.145 0.459
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,091,501
Number of extensions: 304814
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1796
Number of HSP's successfully gapped: 328
Length of query: 385
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 289
Effective length of database: 4,189,273
Effective search space: 1210699897
Effective search space used: 1210699897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)