RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
(385 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.4 bits (89), Expect = 0.003
Identities = 54/336 (16%), Positives = 93/336 (27%), Gaps = 125/336 (37%)
Query: 114 IAGTSVQP------S-EFMKPSFIIVSA-WFFAEQIRHPEIPGNIFSFILFGIVIALLIA 165
+ S +P S E ++ +A +F A Q++ F+ IL A
Sbjct: 1 MDAYSTRPLTLSHGSLEH---VLLVPTASFFIASQLQ------EQFNKILPEPTEGF--A 49
Query: 166 QPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGV 225
D + L V FLG +++ P ++ F +
Sbjct: 50 ADDEPTTP-AEL-----------------VGKFLG----YVSSLVEPS---KVGQFDQVL 84
Query: 226 G---DSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFIL 282
F+ IH + +++ ++ T + +I
Sbjct: 85 NLCLTEFENCYLEGNDIHA----------LAAKLLQENDT-----TLVKTKELIKNYITA 129
Query: 283 CIFA----FIVVRSFLYSLVESNDFIRMAIFG-----------LA-LQIALQAFIN--IG 324
I A S L+ V + +AIFG L L + I
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 325 V------NLHLLP-------TKGM----------TMPAISYGGSSILGICITM---GYLL 358
L T+G+ P Y +L I I+ G ++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIG-VI 244
Query: 359 AL-----TCR----RP-EKRAYEEDFMHTSISHSSG 384
L T + P E R ++ + HS G
Sbjct: 245 QLAHYVVTAKLLGFTPGELR----SYLKGATGHSQG 276
Score = 36.5 bits (84), Expect = 0.011
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 24/64 (37%)
Query: 157 GIVIALLIAQPDFGQSILVSLIWDCMFF---ITGISWL-WIVVFAFLGLMSLFIAYQTMP 212
G+V A+ IA+ D S W+ FF I+ L +I G+ Y+ P
Sbjct: 276 GLVTAVAIAETD---S------WES-FFVSVRKAITVLFFI------GVRC----YEAYP 315
Query: 213 HVAI 216
+ ++
Sbjct: 316 NTSL 319
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing,
cytoplasm, membrane, mitochondrion, transmembrane; 1.64A
{Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A
3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A 2pon_B
Length = 197
Score = 31.7 bits (71), Expect = 0.25
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
L +Q + F G++W IV F+F G + + + M + RI
Sbjct: 109 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 168
Query: 220 HFMTGVGDSFQIDSSRDAII-HGGWFG 245
+M ++ D I +GGW
Sbjct: 169 SWMA----TYLNDHLEPWIQENGGWDT 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.60
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 29 LGLGLMLSFA--SSPSVAEKLGLE 50
L L L +A S+P++A K +E
Sbjct: 25 LQASLKL-YADDSAPALAIKATME 47
>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane
protein, P-type ATPase, HAD fold, hydrolase; HET: ADP
TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1
c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A*
1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A*
2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A*
3fgo_A* 3fpb_A* 3fps_A* ...
Length = 994
Score = 30.3 bits (67), Expect = 0.81
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 5/140 (3%)
Query: 73 SLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV 132
L S I ++ + +W + + Y T P F +
Sbjct: 827 PLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGL 886
Query: 133 SAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLW 192
F P + +L I + + QS++ W ++ + I
Sbjct: 887 DCEIFE-----APEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSM 941
Query: 193 IVVFAFLGLMSLFIAYQTMP 212
+ F L + L + ++
Sbjct: 942 SLHFLILYVDPLPMIFKLKA 961
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
Length = 1028
Score = 29.8 bits (66), Expect = 1.2
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 22/200 (11%)
Query: 128 SFIIVSAWFFAEQIRHPEIPG-----NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCM 182
I F + P ++ + ++ I +A A+ D + + D +
Sbjct: 790 PEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKL 849
Query: 183 FFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIHGG 242
IS + + L F + + + S G
Sbjct: 850 VNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQ 909
Query: 243 WFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILC-IFAFIVVRSFLYSLVESN 301
+ + V F ++ I+ ++ S+ +
Sbjct: 910 QWTYEQRK----------------IVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQG 953
Query: 302 DFIRMAIFGLALQIALQAFI 321
++ IFGL + AL AF+
Sbjct: 954 MKNKILIFGLFEETALAAFL 973
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo
sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A
1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A*
1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A
Length = 218
Score = 29.2 bits (65), Expect = 1.6
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
L +Q + F G++W IV F+F G + + + M + RI
Sbjct: 108 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167
Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243
+M ++ D I +GGW
Sbjct: 168 AWMA----TYLNDHLEPWIQENGGW 188
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus
aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A
2owc_A* 2oww_A* 2owx_A*
Length = 500
Score = 29.0 bits (65), Expect = 2.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGE---GVIKRVIPDSHTDFVFSVAAE 271
+RI+HF G ++I +S + G W K PGE I+ V + V AE
Sbjct: 289 LVRIDHFR-GFEAYWEIPASCPTAVEGRWV-KAPGEKLFQKIQEVFGEVP------VLAE 340
Query: 272 EFGII 276
+ G+I
Sbjct: 341 DLGVI 345
>1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus
musculus} SCOP: f.1.4.1 PDB: 1pq0_A 2bzw_A 1af3_A 2pon_B
2p1l_A
Length = 196
Score = 28.4 bits (63), Expect = 2.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G++W IV F+F G + + + M + RI +M ++ D I +
Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMA----TYLNDHLEPWIQEN 185
Query: 241 GGW 243
GGW
Sbjct: 186 GGW 188
>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex,
apoptosis, alternative splicing, membrane,
mitochondrion, nucleus, transmembrane; 1.78A {Homo
sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A*
Length = 158
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G++W IV F+F G + + + M + RI +M ++ D I +
Sbjct: 79 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMA----TYLNDHLEPWIQEN 134
Query: 241 GGW 243
GGW
Sbjct: 135 GGW 137
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.1 bits (62), Expect = 3.5
Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 34/235 (14%)
Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAY 208
+++++++ I +++ + L I + ++I +FA + +++
Sbjct: 687 RMYAYVVYRIALSIHLE------IFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDN 740
Query: 209 QTM-----PHVAIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTD 263
++ +G + + I + +G
Sbjct: 741 APYSQTPVKWNLPKLWGMSVLLG---VVLAVGTWITVTTMYAQG-------------ENG 784
Query: 264 FVFSVAAEEFGIIFCIFILCIFAFI-VVRSFLYSLVESNDFIRMAIFGLALQIALQAFIN 322
+ ++F L I + R+ S+ + L L
Sbjct: 785 GIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW--SSIPSWQLSGAIFLVDILATCFT 842
Query: 323 IGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL----ALTCRRPEKRAYEED 373
I T + + I I I + Y+L K
Sbjct: 843 IWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGFDNLMHGKSPKGNQ 897
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 28.0 bits (62), Expect = 4.1
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 34 MLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLI 93
+ + +P + KL + +F P+V + L S ++ T F I
Sbjct: 200 LSNLVETPKIVRKLSWVENLWP-EECVFERPNVQ---KYCLMSVRD-SYTDF------HI 248
Query: 94 AMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV-SAWFFAEQIRHP 144
T W +KG K + I T+ + F S + FF +Q+
Sbjct: 249 DFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC 300
>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR
{Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A
Length = 178
Score = 27.2 bits (60), Expect = 5.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G +W +V F F + + M + ++ +M ++ D I
Sbjct: 85 LFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV----AYLETRLADWIHSS 140
Query: 241 GGW 243
GGW
Sbjct: 141 GGW 143
>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose,
tetradeoxysuga micromonospora chalcea, TCAB9, SUGA
methylation; HET: SAM TMP; 1.50A {Micromonospora
chalcea} PDB: 3ndj_A*
Length = 416
Score = 26.8 bits (58), Expect = 8.0
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 103 VEIKGAKRWLYIAGTS---VQPSEF--MKPSFIIVSAWFFAEQIR 142
+ K+ G S F P + ++ AW AE+I
Sbjct: 349 YDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIM 393
>2nl9_A Fusion protein consisting of induced myeloid leukemia cell
differentiation protein...; apoptosis, MCL-1, BIM; HET:
MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A
2pqk_A 1wsx_A 2jm6_B 2roc_A 2rod_A
Length = 157
Score = 26.5 bits (58), Expect = 9.7
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 180 DCMFFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238
+F +W IV +F ++ + + +T + + RD +
Sbjct: 81 IHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESIT----DVLVRTKRDWL 136
Query: 239 I-HGGW 243
+ GW
Sbjct: 137 VKQRGW 142
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.332 0.145 0.459
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,443,071
Number of extensions: 159035
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 78
Length of query: 385
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 291
Effective length of database: 3,414,294
Effective search space: 993559554
Effective search space used: 993559554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.8 bits)