BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
         (385 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 385

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/385 (100%), Positives = 385/385 (100%)

Query: 1   MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL 60
           MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL
Sbjct: 1   MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL 60

Query: 61  FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ 120
           FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ
Sbjct: 61  FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ 120

Query: 121 PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD 180
           PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD
Sbjct: 121 PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD 180

Query: 181 CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH 240
           CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH
Sbjct: 181 CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH 240

Query: 241 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES 300
           GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES
Sbjct: 241 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES 300

Query: 301 NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL 360
           NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL
Sbjct: 301 NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL 360

Query: 361 TCRRPEKRAYEEDFMHTSISHSSGS 385
           TCRRPEKRAYEEDFMHTSISHSSGS
Sbjct: 361 TCRRPEKRAYEEDFMHTSISHSSGS 385


>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 23.9 bits (50), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 184 FITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215
           FI G+S   ++  AF+G +S  I Y  +  +A
Sbjct: 36  FIVGLSIYILISHAFVGTISEMIPYSVIREIA 67


>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 311

 Score = 23.1 bits (48), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 76  SPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEF 124
           SP N  + + + LF+  +A  ++LFWG       +WL  +G     + F
Sbjct: 108 SPSN--DFSIMGLFIGFMANIISLFWG-------KWLIYSGEKNHSAAF 147


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.332    0.145    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,469
Number of Sequences: 1233
Number of extensions: 10628
Number of successful extensions: 44
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 13
length of query: 385
length of database: 328,796
effective HSP length: 76
effective length of query: 309
effective length of database: 235,088
effective search space: 72642192
effective search space used: 72642192
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 39 (19.6 bits)