BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] (385 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/385 (100%), Positives = 385/385 (100%) Query: 1 MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL 60 MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL Sbjct: 1 MVKRAERGILAEWFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHAL 60 Query: 61 FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ 120 FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ Sbjct: 61 FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQ 120 Query: 121 PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD 180 PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD Sbjct: 121 PSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWD 180 Query: 181 CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH 240 CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH Sbjct: 181 CMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIH 240 Query: 241 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES 300 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES Sbjct: 241 GGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVES 300 Query: 301 NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL 360 NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL Sbjct: 301 NDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLAL 360 Query: 361 TCRRPEKRAYEEDFMHTSISHSSGS 385 TCRRPEKRAYEEDFMHTSISHSSGS Sbjct: 361 TCRRPEKRAYEEDFMHTSISHSSGS 385 >gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 184 FITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215 FI G+S ++ AF+G +S I Y + +A Sbjct: 36 FIVGLSIYILISHAFVGTISEMIPYSVIREIA 67 >gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 23.1 bits (48), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 9/49 (18%) Query: 76 SPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEF 124 SP N + + + LF+ +A ++LFWG +WL +G + F Sbjct: 108 SPSN--DFSIMGLFIGFMANIISLFWG-------KWLIYSGEKNHSAAF 147 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.332 0.145 0.459 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,469 Number of Sequences: 1233 Number of extensions: 10628 Number of successful extensions: 44 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 13 length of query: 385 length of database: 328,796 effective HSP length: 76 effective length of query: 309 effective length of database: 235,088 effective search space: 72642192 effective search space used: 72642192 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 39 (19.6 bits)