HHsearch alignment for GI: 254781099 and conserved domain: COG0770
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=363.58 Aligned_cols=325 Identities=22% Similarity=0.289 Sum_probs=248.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCEEEEECC-CCC--C-CCCCCCCC
Q ss_conf 56886899603457521578999999873100000001----2443221101688837999217-754--3-21223332
Q gi|254781099|r 110 SLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPNRFYVIECS-SYQ--I-ELTPTIDP 181 (468)
Q Consensus 110 ~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~V~E~S-SfQ--L-~~~~~~~P 181 (468)
T Consensus 100 ~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P 179 (451)
T COG0770 100 KFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYAVLEMGMNHPGEIAELSEIARP 179 (451)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 36996899958997076999999998636807467876686544156897477766479998689977747888440589
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECC---CCCCCCCCHHHHHHHHHCCCCCCEEECCCCC---C-CCCCCCE
Q ss_conf 2101110021012221110000112210001013---4432247867899987401234301103644---3-2223411
Q gi|254781099|r 182 SIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSK---HAIICINDHQCEKIAYDMNFIGHSISRISSQ---S-LQSDSDL 254 (468)
Q Consensus 182 diavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~---~~iln~dd~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 254 (468)
T Consensus 180 ~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~--~~v~~fg~~~~~d~~~~~i~~ 257 (451)
T COG0770 180 DIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGN--AKVLSFGLNNGGDFRATNIHL 257 (451)
T ss_pred CEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC--CCEEEECCCCCCCEEEEEEEE
T ss_conf 889983805999874288999999999998156878679987861777877763578--757997688777525677898
Q ss_pred EECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 21241354146764212345588510111001101222102222211000000001345443321003430000023556
Q gi|254781099|r 255 YIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKAT 334 (468)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~iIDDS~at 334 (468)
T Consensus 258 ~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNA 337 (451)
T COG0770 258 DEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNA 337 (451)
T ss_pred CCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCC
T ss_conf 38850799980683379994578476899999999999981999999999998637888663367648981899737889
Q ss_pred CHHHHHHHHHCC---CCCC-EEEECCCCCCCC-----HHHHHHHHCC--CCEEEEECCCHHHHHHHHHCCCCEEEECCHH
Q ss_conf 755555532013---3320-012032101220-----6898998427--8689998899899888631689889987999
Q gi|254781099|r 335 NLHSVIHAFLNE---KRRI-YWIAGGLSKSDD-----FSTLFPFISK--IAKAYFIGNSAMLFFHHFGGKINSTLSKTLD 403 (468)
Q Consensus 335 np~a~~~Al~~~---~~~i-~lI~GG~~K~~d-----~~~L~~~~~~--~~~~~liG~~~~~i~~~~~~~~~~~~~~~~~ 403 (468)
T Consensus 338 np~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~~~--~~~f~~~~ 415 (451)
T COG0770 338 NPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALGNK--GIYFADKE 415 (451)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCC--EEECCCHH
T ss_conf 9899999999996376688579947766638548999999999998569509999762069999865777--58607779
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998448985999452216631347989999999999986379
Q gi|254781099|r 404 QALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453 (468)
Q Consensus 404 ~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~ 453 (468)
T Consensus 416 ~l~~~l~---~~l~~gd~vLvK---gS---------r~~~le~vv~~l~~ 450 (451)
T COG0770 416 ELITSLK---ALLRKGDVVLVK---GS---------RGMKLEKVVDALLG 450 (451)
T ss_pred HHHHHHH---HHCCCCCEEEEE---CC---------CCCCHHHHHHHHHC
T ss_conf 9999999---856778789997---37---------64657999999831