HHsearch alignment for GI: 254781099 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=100.00 E-value=0 Score=416.77 Aligned_cols=320 Identities=22% Similarity=0.273 Sum_probs=234.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-------------CC-CCC------CCCCCCCEEEEEC
Q ss_conf 156886899603457521578999999873100000001244-------------32-211------0168883799921
Q gi|254781099|r 109 SSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGL-------------PI-LNL------EYFSPNRFYVIEC 168 (468)
Q Consensus 109 ~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~-------------p~-~~~------~~~~~~~~~V~E~ 168 (468)
T Consensus 96 ~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEv 175 (481)
T PRK00139 96 PSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTLIPSGLTTPEALDLQRLLAEAVDAGATHVAMEV 175 (481)
T ss_pred CHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 04318089995899843499999999987498631430221141873036678988768899999999987997799984
Q ss_pred CCCCCC--CCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEC--CCCCCCCCCHHHHHHHHHCCCCCCEEECCC
Q ss_conf 775432--1223332210111002101222111000011221000101--344322478678999874012343011036
Q gi|254781099|r 169 SSYQIE--LTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMS--KHAIICINDHQCEKIAYDMNFIGHSISRIS 244 (468)
Q Consensus 169 SSfQL~--~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~--~~~iln~dd~~~~~~~~~~~~~~~~~~~~~ 244 (468)
T Consensus 176 SShgl~q~Rv~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~~~~~aViN~DD~~~~~~~~~~~~~~it~g~~~ 255 (481)
T PRK00139 176 SSHALDQGRVDGLTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAELGLKAAVINADDEVGARLLAALPATVVTYSIED 255 (481)
T ss_pred CHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCEECCCC
T ss_conf 30355522134887568999657677853437899999999999746578824994688899999997178852540478
Q ss_pred C-CCCCC-CCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCC
Q ss_conf 4-43222-341121241354146764212345588510111001101222102222211000000001345443321003
Q gi|254781099|r 245 S-QSLQS-DSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARL 322 (468)
Q Consensus 245 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~ 322 (468)
T Consensus 256 ~~ad~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hNv~NalaAiava~~lGi~~~~i~~~L~~~~~v~GRmE~i~~~ 335 (481)
T PRK00139 256 HGADLRATDIEFSAQGVSFTLVTPWGEGEVESPLIGRFNVSNLLAAIAALLALGVPLEDILKALAKLRPVPGRMERVGAG 335 (481)
T ss_pred CCCEEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 88608999999848961999995893799996788788898799999999983989899999983499999986899879
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCC----CCCCEEEEC-CCCCCCCHHH-HHHHHCCCCEEEEE------CCCHHHHHHHH
Q ss_conf 430000023556755555532013----332001203-2101220689-89984278689998------89989988863
Q gi|254781099|r 323 GHVIFINDSKATNLHSVIHAFLNE----KRRIYWIAG-GLSKSDDFST-LFPFISKIAKAYFI------GNSAMLFFHHF 390 (468)
Q Consensus 323 ~gv~iIDDS~atnp~a~~~Al~~~----~~~i~lI~G-G~~K~~d~~~-L~~~~~~~~~~~li------G~~~~~i~~~~ 390 (468)
T Consensus 336 ~~~~vivD-YAHtP~sl~~~L~~lr~~~~~rli~VfG~gG~Rd~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i 414 (481)
T PRK00139 336 GGPLVIVD-YAHTPDALEKVLDALRPHAKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADI 414 (481)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 99689997-68998999999999987648986999898677770141899999997199899939998998999999999
Q ss_pred HCCC---CEEEECCHHHHHHHHHHHHHHCCCCCEEEEC-CCCCCCC
Q ss_conf 1689---8899879999999999999844898599945-2216631
Q gi|254781099|r 391 GGKI---NSTLSKTLDQALKSVVRDVENVQLPSIVLFS-PGCASFD 432 (468)
Q Consensus 391 ~~~~---~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlS-Pa~aS~d 432 (468)
T Consensus 415 ~~g~~~~~~~~i~dR~~AI~~a---i~~a~~~d~vliaGKGhE~~q 457 (481)
T PRK00139 415 LAGITHANAVVIEDRAEAIKYA---IALAKPGDVVLIAGKGHEDYQ 457 (481)
T ss_pred HHCCCCCCEEEECCHHHHHHHH---HHHCCCCCEEEEEECCCCCCE
T ss_conf 8269879928978999999999---985599999999735876668