HHsearch alignment for GI: 254781099 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=867.63 Aligned_cols=449 Identities=46% Similarity=0.772 Sum_probs=399.8
Q ss_pred CCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 81321898799983685489999999985986999818964788999789899645315722588899888868567557
Q gi|254781099|r 2 KLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENA 81 (468)
Q Consensus 2 ~~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~~ 81 (468)
T Consensus 3 ~~~~~~gk~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~ 82 (457)
T PRK01390 3 PVTSFKGKTVALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKP 82 (457)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 73202899899994369999999999978997999939920668998759831455412320387899999888656673
Q ss_pred CHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88899999769809983034223343015688689960345752157899999987310000000124432211016888
Q gi|254781099|r 82 HWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPN 161 (468)
Q Consensus 82 ~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~~ 161 (468)
T Consensus 83 ~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNIG~p~l~l~~~~~~ 162 (457)
T PRK01390 83 HWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGNIGTAILSLEPPKAG 162 (457)
T ss_pred HHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCC
T ss_conf 19999999859918600899999987325789889992899649899999999997399869966624011123468899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 37999217754321223332210111002101222111000011221000101344322478678999874012343011
Q gi|254781099|r 162 RFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSIS 241 (468)
Q Consensus 162 ~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~~~~~ 241 (468)
T Consensus 163 ~~~VlElSSfQl~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~Vin~DD~~~~~l~~~~~~~~~~~~ 242 (457)
T PRK01390 163 RVYVVECSSYQIDLTPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAGAGTAVIGVDDAYCQAIADRLERAGKRVV 242 (457)
T ss_pred CEEEEEECCCHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE
T ss_conf 66999925752654400699889991788778655089999999999985579869996888889999999876388499
Q ss_pred CCCCCCCCCCCCEEECCCEEEECCCCCC--CC---CCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 0364432223411212413541467642--12---345588510111001101222102222211000000001345443
Q gi|254781099|r 242 RISSQSLQSDSDLYIDESFLKCSATSEV--IF---DFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRL 316 (468)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~ 316 (468)
T Consensus 243 ~~s~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~ 321 (457)
T PRK01390 243 RISVEKPLA-RGIYADGGKLVRATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRM 321 (457)
T ss_pred EEECCCCCC-CCEEEECCEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 971676566-8649857889984798345443143234577542699999999999981898999999997489999852
Q ss_pred HHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCE
Q ss_conf 32100343000002355675555553201333200120321012206898998427868999889989988863168988
Q gi|254781099|r 317 QTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINS 396 (468)
Q Consensus 317 E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~~~~~liG~~~~~i~~~~~~~~~~ 396 (468)
T Consensus 322 E~V~~~~Gv~~iNDSKaTN~~at~~Al~s~~-~i~lI~GG~~K~~d~~~l~~~~~~v~~~~liG~~~~~~~~~l~~~~~~ 400 (457)
T PRK01390 322 EQVGRRGKVLFVNDSKATNADAAAPALSSFP-NIYWIAGGKPKAGGIESLAPFFPRIAKAYLIGEAAEEFAATLGGAVPY 400 (457)
T ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
T ss_conf 7975427833853776789899999997378-859994504788897999998743359999898889999987367987
Q ss_pred EEECCHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 998799999999999998-44898599945221663134798999999999998637
Q gi|254781099|r 397 TLSKTLDQALKSVVRDVE-NVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIP 452 (468)
Q Consensus 397 ~~~~~~~~a~~~i~~~~~-~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~ 452 (468)
T Consensus 401 ~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L~ 457 (457)
T PRK01390 401 EISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQALP 457 (457)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 985989999999999998518999989979624040142699999999999998682