HHsearch alignment for GI: 254781099 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=867.63  Aligned_cols=449  Identities=46%  Similarity=0.772  Sum_probs=399.8

Q ss_pred             CCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf             81321898799983685489999999985986999818964788999789899645315722588899888868567557
Q gi|254781099|r    2 KLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENA   81 (468)
Q Consensus         2 ~~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~~   81 (468)
T Consensus         3 ~~~~~~gk~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~   82 (457)
T PRK01390          3 PVTSFKGKTVALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKP   82 (457)
T ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             73202899899994369999999999978997999939920668998759831455412320387899999888656673


Q ss_pred             CHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88899999769809983034223343015688689960345752157899999987310000000124432211016888
Q gi|254781099|r   82 HWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPN  161 (468)
Q Consensus        82 ~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~~  161 (468)
T Consensus        83 ~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNIG~p~l~l~~~~~~  162 (457)
T PRK01390         83 HWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGNIGTAILSLEPPKAG  162 (457)
T ss_pred             HHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCC
T ss_conf             19999999859918600899999987325789889992899649899999999997399869966624011123468899


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf             37999217754321223332210111002101222111000011221000101344322478678999874012343011
Q gi|254781099|r  162 RFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSIS  241 (468)
Q Consensus       162 ~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~~~~~  241 (468)
T Consensus       163 ~~~VlElSSfQl~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~Vin~DD~~~~~l~~~~~~~~~~~~  242 (457)
T PRK01390        163 RVYVVECSSYQIDLTPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAGAGTAVIGVDDAYCQAIADRLERAGKRVV  242 (457)
T ss_pred             CEEEEEECCCHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE
T ss_conf             66999925752654400699889991788778655089999999999985579869996888889999999876388499


Q ss_pred             CCCCCCCCCCCCEEECCCEEEECCCCCC--CC---CCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf             0364432223411212413541467642--12---345588510111001101222102222211000000001345443
Q gi|254781099|r  242 RISSQSLQSDSDLYIDESFLKCSATSEV--IF---DFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRL  316 (468)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~  316 (468)
T Consensus       243 ~~s~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~  321 (457)
T PRK01390        243 RISVEKPLA-RGIYADGGKLVRATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRM  321 (457)
T ss_pred             EEECCCCCC-CCEEEECCEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCE
T ss_conf             971676566-8649857889984798345443143234577542699999999999981898999999997489999852


Q ss_pred             HHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCE
Q ss_conf             32100343000002355675555553201333200120321012206898998427868999889989988863168988
Q gi|254781099|r  317 QTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINS  396 (468)
Q Consensus       317 E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~~~~~liG~~~~~i~~~~~~~~~~  396 (468)
T Consensus       322 E~V~~~~Gv~~iNDSKaTN~~at~~Al~s~~-~i~lI~GG~~K~~d~~~l~~~~~~v~~~~liG~~~~~~~~~l~~~~~~  400 (457)
T PRK01390        322 EQVGRRGKVLFVNDSKATNADAAAPALSSFP-NIYWIAGGKPKAGGIESLAPFFPRIAKAYLIGEAAEEFAATLGGAVPY  400 (457)
T ss_pred             EEEEECCCCEEECCCCCCCHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
T ss_conf             7975427833853776789899999997378-859994504788897999998743359999898889999987367987


Q ss_pred             EEECCHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             998799999999999998-44898599945221663134798999999999998637
Q gi|254781099|r  397 TLSKTLDQALKSVVRDVE-NVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIP  452 (468)
Q Consensus       397 ~~~~~~~~a~~~i~~~~~-~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~  452 (468)
T Consensus       401 ~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L~  457 (457)
T PRK01390        401 EISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQALP  457 (457)
T ss_pred             EECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             985989999999999998518999989979624040142699999999999998682