HHsearch alignment for GI: 254781099 and conserved domain: PRK01710
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=787.99 Aligned_cols=429 Identities=24% Similarity=0.355 Sum_probs=361.2
Q ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCH-----HHHHHHHCCCEEECCC--CCCCCCCCEEEECCCCCCC
Q ss_conf 21898799983685489999999985986999818964-----7889997898996453--1572258889988886856
Q gi|254781099|r 5 SFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPC-----AVKQAKDMGIEVIDFR--EIPWSIISFLVLSPGIALT 77 (468)
Q Consensus 5 ~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~-----~~~~l~~~g~~~~~~~--~~~~~~~d~vv~Spgi~~~ 77 (468)
T Consensus 11 ~l~~kkv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv~SPgI~~~ 90 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEISLELKEKGVNLELGENYLDKLTGFDVIFKTPSMRID 90 (458)
T ss_pred HHCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEEECCCCCCC
T ss_conf 97899699997878899999999978897999989884314899999985799899578405423788889989987998
Q ss_pred CCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
Q ss_conf 755788899999769809983034223343015688689960345752157899999987310000000124432211-0
Q gi|254781099|r 78 GENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNL-E 156 (468)
Q Consensus 78 ~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~-~ 156 (468)
T Consensus 91 ----~p~~~~a~~~gi~v~~e~el~~~~-----~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGNiG~p~~~~~~ 161 (458)
T PRK01710 91 ----SPELVKAKEEGAYITSEMEEFIKY-----CPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLFSNIE 161 (458)
T ss_pred ----CHHHHHHHHCCCCEECHHHHHHHH-----CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf ----999999998799374099999863-----75877999368984789999999999849975851662644688885
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEC---CCCCCCCCCHHHHHHHHHC
Q ss_conf 1688837999217754321223332210111002101222111000011221000101---3443224786789998740
Q gi|254781099|r 157 YFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMS---KHAIICINDHQCEKIAYDM 233 (468)
Q Consensus 157 ~~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~---~~~iln~dd~~~~~~~~~~ 233 (468)
T Consensus 162 ~~~~~d~~V~E~SS~ql~~~-~~~P~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~i~n~Dd~~~~~~~~~~ 240 (458)
T PRK01710 162 EIKEEDKVVLELSSFQLMTM-DVSPEVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKYQSSNDLLVLNKDNEITNGMEKEA 240 (458)
T ss_pred HCCCCCEEEEEECHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC
T ss_conf 05788669999321555305-46887899835885365065419999999999996388773799937869999987763
Q ss_pred CCCCCEEECCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHH
Q ss_conf 12343011036443222341121241354146764212345588510111001101222102222211000000001345
Q gi|254781099|r 234 NFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLT 313 (468)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 313 (468)
T Consensus 241 ~~~~~~f---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~ 315 (458)
T PRK01710 241 KGDVVKF---SRKEKL-KEGAYYKDGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVE 315 (458)
T ss_pred CCCEEEE---CCCCCC-CCCCEEECCEEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHH
T ss_conf 6878995---366545-6673676688998784011324216776544999999999998-1999999999987543534
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCHHHHHHHHHC
Q ss_conf 4433210034300000235567555555320133320012032101220689899842-786899988998998886316
Q gi|254781099|r 314 HRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFIS-KIAKAYFIGNSAMLFFHHFGG 392 (468)
Q Consensus 314 ~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~-~~~~~~liG~~~~~i~~~~~~ 392 (468)
T Consensus 316 hR~E~v~~~~gv~~iNDSkaTn~~s~~~AL~~~~~~iilI~GG~~K~~d~~~l~~~~~~~~k~vi~~G~~~~~i~~~l~~ 395 (458)
T PRK01710 316 HRCEFVREINGVKYYNDSIASSPTRTLAGLNAFEKPVILIAGGYDKKIPFEPLAEEGYEKIKILILMGDTKNKIKEAFKK 395 (458)
T ss_pred HHHEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
T ss_conf 23146578747679815766898999999971677729996465667886999998763052999978877999999987
Q ss_pred -------CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -------89889987999999999999984489859994522166313479899999999999863
Q gi|254781099|r 393 -------KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 393 -------~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 396 ~~~~~~~~~~~~~~~~l~~Av~~a~~---~a~~gd~VLlSPa~aSfD~f~nfeeRG~~F~~~V~~L 458 (458)
T PRK01710 396 VEEEKGIKIPIVIVNSLEEAVKVAKN---IAEKGDIITLSPACASFDMFPNFEIRGNKFKEIVNNL 458 (458)
T ss_pred HHHHCCCCCCEEHHHHHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 66631688652337359999999997---5889798998973311035269999999999999739