HHsearch alignment for GI: 254781099 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=831.89 Aligned_cols=447 Identities=25% Similarity=0.365 Sum_probs=374.9
Q ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC--CHHHHHHHHCCCEE--E--CCCCCCCCCCCEEEECCCCCCC
Q ss_conf 3218987999836854899999999859869998189--64788999789899--6--4531572258889988886856
Q gi|254781099|r 4 SSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDH--PCAVKQAKDMGIEV--I--DFREIPWSIISFLVLSPGIALT 77 (468)
Q Consensus 4 ~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~--~~~~~~l~~~g~~~--~--~~~~~~~~~~d~vv~Spgi~~~ 77 (468)
T Consensus 3 ~~~~~k~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~ 82 (501)
T PRK02006 3 GDRQRPMVLVLGLGESGLAMARWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPL 82 (501)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCC
T ss_conf 66689839998336889999999997898499998999986199998608981897788986784689999989900888
Q ss_pred CCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHC----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 75578889999976980998303422334301----56886899603457521578999999873100000001244322
Q gi|254781099|r 78 GENAHWCVKLANQFNVEIIGDIELFVRERRFS----SLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPIL 153 (468)
Q Consensus 78 ~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~----~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~ 153 (468)
T Consensus 83 ~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GNIG~p~l 162 (501)
T PRK02006 83 EPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGNISPAAL 162 (501)
T ss_pred CCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 85431999999987995876899999887630222356874899938996687999999999976997465256461026
Q ss_pred CC-----CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 11-----0168883799921775432122333221011100210122211100001122100010134432247867899
Q gi|254781099|r 154 NL-----EYFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEK 228 (468)
Q Consensus 154 ~~-----~~~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~ 228 (468)
T Consensus 163 ~~l~~~~~~~~~~d~~VlElSSfQLe~~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~~~~~~V~n~DD~~~~~ 242 (501)
T PRK02006 163 DKLAEAIDAAALPDVWVLELSSFQLETTHTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFGPATVRVLNRDDALVMA 242 (501)
T ss_pred HHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 77876422577686899996646757565579678999078865644423799999999987234855999488888998
Q ss_pred HHHHCCCCCCEEECCCCCCC-CCCCCEEECCC--EE--------------------------EECCCCCCCCCCCCCCCC
Q ss_conf 98740123430110364432-22341121241--35--------------------------414676421234558851
Q gi|254781099|r 229 IAYDMNFIGHSISRISSQSL-QSDSDLYIDES--FL--------------------------KCSATSEVIFDFSQETKK 279 (468)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~--------------------------~~~~~~~~~~~~~~l~G~ 279 (468)
T Consensus 243 ~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G~ 322 (501)
T PRK02006 243 MAPPAAAADAPVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRGL 322 (501)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCCC
T ss_conf 76650566416885057756665402562377057873032210000001221023334443310110355201035672
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 01110011012221022222110000000013454433210034300000235567555555320133320012032101
Q gi|254781099|r 280 HNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSK 359 (468)
Q Consensus 280 HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K 359 (468)
T Consensus 323 HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V~~~~gv~~iNDSKaTN~~at~~Al~s~~~~iilI~GG~~K 402 (501)
T PRK02006 323 HNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVIATIDDVDYVDDSKGTNVGATVAALDGLAQRVVLIAGGDGK 402 (501)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 06999999999999859987898766315578765258999967889973787789899999997078974999805777
Q ss_pred CCCHHHHHHHHCC-CCEEEEECCCHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCH
Q ss_conf 2206898998427-868999889989988863168-98899879999999999999844898599945221663134798
Q gi|254781099|r 360 SDDFSTLFPFISK-IAKAYFIGNSAMLFFHHFGGK-INSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNF 437 (468)
Q Consensus 360 ~~d~~~L~~~~~~-~~~~~liG~~~~~i~~~~~~~-~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y 437 (468)
T Consensus 403 ~~d~~~L~~~~~~~~k~vil~G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~---~a~~gd~VLlSPacaSfD~F~ny 479 (501)
T PRK02006 403 GQDFSPLAAPVARWARAVVLIGRDAPAIRAALADTGVPLVDAATLEEAVRAAAE---LAQPGDAVLLSPACASLDMFRNY 479 (501)
T ss_pred CCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCH
T ss_conf 779799999998537099998989999999975179807985999999999997---57897989989611030120699
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999999999986379
Q gi|254781099|r 438 RERGFSFMSQVSEIPG 453 (468)
Q Consensus 438 ~~RG~~F~~~v~~l~~ 453 (468)
T Consensus 480 eeRG~~F~~~V~~L~~ 495 (501)
T PRK02006 480 AHRAQVFRAAVEELAL 495 (501)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998