HHsearch alignment for GI: 254781099 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=833.82 Aligned_cols=436 Identities=29% Similarity=0.434 Sum_probs=378.3
Q ss_pred CC-CHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC----HHHHHHHHCCCEEECCCC---CCCCCCCEEEECC
Q ss_conf 98-132189879998368548999999998598699981896----478899978989964531---5722588899888
Q gi|254781099|r 1 MK-LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP----CAVKQAKDMGIEVIDFRE---IPWSIISFLVLSP 72 (468)
Q Consensus 1 m~-~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~----~~~~~l~~~g~~~~~~~~---~~~~~~d~vv~Sp 72 (468)
T Consensus 1 m~~~~~~~~k~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV~SP 80 (450)
T PRK02472 1 MKTITTFQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPAAQELLEEGIKVICGSHPLELLDENFDLMVKNP 80 (450)
T ss_pred CCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHHCCCCCCEEEECC
T ss_conf 97630358998999977899999999999886989998488665798999999679989978880786057887999899
Q ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 86856755788899999769809983034223343015688689960345752157899999987310000000124432
Q gi|254781099|r 73 GIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPI 152 (468)
Q Consensus 73 gi~~~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~ 152 (468)
T Consensus 81 gI~~~----~p~~~~a~~~~i~v~~~~el~~~~-----~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GNiG~p~ 151 (450)
T PRK02472 81 GIPYD----NPMVEEALEKGIPIITEVELAYLI-----SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGNIGYPA 151 (450)
T ss_pred CCCCC----CHHHHHHHHCCCCEEEHHHHHHHH-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 87999----999999998699674387888875-----159789982799973199999999997499739994167641
Q ss_pred CCCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECC---CCCCCCCCHHHHH
Q ss_conf 2110-16888379992177543212233322101110021012221110000112210001013---4432247867899
Q gi|254781099|r 153 LNLE-YFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSK---HAIICINDHQCEK 228 (468)
Q Consensus 153 ~~~~-~~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~---~~iln~dd~~~~~ 228 (468)
T Consensus 152 ~~~~~~~~~~d~~VlE~SSfql~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~v~n~Dd~~~~~ 231 (450)
T PRK02472 152 SEVAQKATADDTLVTELSSFQLMGVETFRPHIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQTEDDYLVLNADQEEVKE 231 (450)
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 24554478987799990655141002258868999368877976634899999999999955996877999588799999
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 98740123430110364432223411212413541467642123455885101110011012221022222110000000
Q gi|254781099|r 229 IAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLS 308 (468)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~ 308 (468)
T Consensus 232 l~~~~~~~~i~f---s~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~ 306 (450)
T PRK02472 232 LAKQTKATVVPF---STTKE--VDGAYIKDGALYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLST 306 (450)
T ss_pred HHHHCCCEEEEE---CCCCC--CCCCEEECCEEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 997579708985---36754--6651762787998884566423236775534999999999999829987899999874
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 01345443321003430000023556755555532013332001203210122068989984278689998899899888
Q gi|254781099|r 309 CGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFH 388 (468)
Q Consensus 309 f~gv~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~~~~~liG~~~~~i~~ 388 (468)
T Consensus 307 F~Gl~hRlE~v~~~~Gv~~iNDSKaTN~~at~~Al~~~~~~iilI~GG~~Kg~d~~~l~~~~~~vk~v~~~G~~~~~i~~ 386 (450)
T PRK02472 307 FTGVKHRLQYVGTINGRKFYNDSKATNILATQKALSGFNQPVILLAGGLDRGNEFDELIPYLKNVKAMVVFGETAPKLAR 386 (450)
T ss_pred CCCCCEEEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 48843379999997477898268888999999998458998799991555688879999997376899996889999999
Q ss_pred HHHC-CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6316-8988998799999999999998448985999452216631347989999999999986379
Q gi|254781099|r 389 HFGG-KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453 (468)
Q Consensus 389 ~~~~-~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~ 453 (468)
T Consensus 387 ~~~~~~~~~~~~~~l~~Av~~a~---~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L~g 449 (450)
T PRK02472 387 AANKAGITIVEADNVEDAVPKAY---ALSEPGDVILLSPACASWDQYKTFEERGDEFIDAVHELKG 449 (450)
T ss_pred HHHHCCCEEEECCCHHHHHHHHH---HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99737971898799999999999---8588959899797330501205999999999999997479