HHsearch alignment for GI: 254781099 and conserved domain: PRK03562

Probab=97.35  E-value=0.0017  Score=43.16  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             HHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCC---CEEEEECCCHHHHHHHHH
Q ss_conf             43321003430000023556755555532013332001203210122068989984278---689998899899888631
Q gi|254781099|r  315 RLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKI---AKAYFIGNSAMLFFHHFG  391 (468)
Q Consensus       315 R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~---~~~~liG~~~~~i~~~~~  391 (468)
T Consensus       434 ~V~~~r~~G~~v~yGD--at~~~vL~~A-Gi~~Ar~vViaid-d~~-~~~~iv~~~r~~~P~l~IiaRard~~~~~~L~~  508 (615)
T PRK03562        434 HIETLRKFGMKVFYGD--ATRMDLLESA-GAAKAEVLINAID-DPQ-TNLQLTELVKEHFPHLQIIARARDVDHYIRLRQ  508 (615)
T ss_pred             HHHHHHHCCCEEEEEC--CCCHHHHHHC-CCCCCCEEEEEEC-CHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf             9999996799089768--9999999867-9140688999949-899-999999999975899869998397788999997


Q ss_pred             CCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf             689889987999999999999984
Q gi|254781099|r  392 GKINSTLSKTLDQALKSVVRDVEN  415 (468)
Q Consensus       392 ~~~~~~~~~~~~~a~~~i~~~~~~  415 (468)
T Consensus       509 ~Ga~~vv~Et~essL~l~~~~L~~  532 (615)
T PRK03562        509 AGVEKPERETFEGALKSGRLALES  532 (615)
T ss_pred             CCCCEEECCHHHHHHHHHHHHHHH
T ss_conf             899989666589999999999998