HHsearch alignment for GI: 254781099 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=788.39 Aligned_cols=427 Identities=28% Similarity=0.446 Sum_probs=354.0
Q ss_pred CHHHCC-CEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCH-HHHHHHHCCCEEEC--CCCCCCCCCCEEEECCCCCC
Q ss_conf 132189-879998368548999999998598--6999818964-78899978989964--53157225888998888685
Q gi|254781099|r 3 LSSFRN-HSIAVFGLGRSGLSAACALKDSGV--HVIAWDDHPC-AVKQAKDMGIEVID--FREIPWSIISFLVLSPGIAL 76 (468)
Q Consensus 3 ~~~~~~-k~v~i~G~G~sG~s~A~~l~~~G~--~V~~~D~~~~-~~~~l~~~g~~~~~--~~~~~~~~~d~vv~Spgi~~ 76 (468)
T Consensus 1 ~~~~~~~KkvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~~ 80 (438)
T PRK04663 1 MDRWQGIKNVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIAL 80 (438)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCCC
T ss_conf 94225997499990678589999999966998469996398893688762069769727889678368999998997699
Q ss_pred CCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 67557888999997698099830342233430156886899603457521578999999873100000001244322110
Q gi|254781099|r 77 TGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLE 156 (468)
Q Consensus 77 ~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~ 156 (468)
T Consensus 81 ~----~p~~~~a~~~~i~i~~eiel~~~~-----~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNiG~p~~~~~ 151 (438)
T PRK04663 81 A----TPEIQPVLAKGIPVVGDIELFAWA-----VDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPALDLL 151 (438)
T ss_pred C----CHHHHHHHHCCCCEECHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 8----989999998699370388999764-----5897899948998289999999999828997068721571688753
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 16888379992177543212233322101110021012221110000112210001013443224786789998740123
Q gi|254781099|r 157 YFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFI 236 (468)
Q Consensus 157 ~~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~ 236 (468)
T Consensus 152 -~~~~d~~VlElSSfQLe~~~~~~p~iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~~~~Ivn~dd~~~~~~~~~~~~~ 230 (438)
T PRK04663 152 -EQDAELYVLELSSFQLETTSSLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAELAVVNRDDKQTYPDTASLQLV 230 (438)
T ss_pred -HCCCCEEEEECCCCCHHHHCCCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEE
T ss_conf -0469789984451014340356863334406887687773699999999999853697899865359888776078579
Q ss_pred CCEEECCCCCCCCCCCCEEECC--CEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 4301103644322234112124--13541467642123455885101110011012221022222110000000013454
Q gi|254781099|r 237 GHSISRISSQSLQSDSDLYIDE--SFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTH 314 (468)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~ 314 (468)
T Consensus 231 ~fg~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpH 303 (438)
T PRK04663 231 TFGFD-----QQ--EYGLIEHQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTH 303 (438)
T ss_pred EEECC-----CC--CCCEEEECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 96046-----20--165597278699985887766314305664556877999999999839997898656533589887
Q ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCC--CCCEEEECCCCCCCCHHHHHHHHCCCC-EEEEECCCHHHHHHHHH
Q ss_conf 433210034300000235567555555320133--320012032101220689899842786-89998899899888631
Q gi|254781099|r 315 RLQTIARLGHVIFINDSKATNLHSVIHAFLNEK--RRIYWIAGGLSKSDDFSTLFPFISKIA-KAYFIGNSAMLFFHHFG 391 (468)
Q Consensus 315 R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~--~~i~lI~GG~~K~~d~~~L~~~~~~~~-~~~liG~~~~~i~~~~~ 391 (468)
T Consensus 304 RlE~v~~~~gv~~iNDSKaTN~~a~~~Al~~~~~~~~i~lI~GG~~Kg~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~ 383 (438)
T PRK04663 304 RCQVVADNRGIKWVNDSKATNVASTLAALSGLNLEGKLYLLVGGVGKGADFSELKPVLATLNLQLCCFGEDGDQFMPLHP 383 (438)
T ss_pred CEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHCC
T ss_conf 52899998999997478778878999999836777847999657666668799999985237699998888999974324
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6898899879999999999999844898599945221663134798999999999998637
Q gi|254781099|r 392 GKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIP 452 (468)
Q Consensus 392 ~~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~ 452 (468)
T Consensus 384 ---~~~~~~~l~~Av~~a~~---~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~la 438 (438)
T PRK04663 384 ---SARRFETMEDAIESISP---QLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQYA 438 (438)
T ss_pred ---CCEECCCHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---53440679999999998---67799989989744030030699999999999999749