HHsearch alignment for GI: 254781099 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=395.74 Aligned_cols=361 Identities=18% Similarity=0.187 Sum_probs=265.7
Q ss_pred CCCCCHHHHHHHHCCCE-E-EEEH--H------------HHHHHH---HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 75578889999976980-9-9830--3------------422334---30156886899603457521578999999873
Q gi|254781099|r 78 GENAHWCVKLANQFNVE-I-IGDI--E------------LFVRER---RFSSLQSPFIAVTGTNGKSSTVALISHVLRKN 138 (468)
Q Consensus 78 ~~~~~~~~~~a~~~gi~-v-~s~~--e------------l~~~~~---~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~ 138 (468)
T Consensus 537 ~~DGH~Fi~~Ai~~GA~~~vv~~~~~~~~~p~I~V~Dt~~AL~~lA~~~r~~~~~~vIgITGSnGKTTTKeml~~iLs~~ 616 (953)
T PRK11929 537 NFDGHAYLPQAFSAGACAAVVAHQVADVALPQLVLGDTLAALGRMATAWRSSFSLPVIAITGSNGKTTTKEMIAAILAQW 616 (953)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 77779999999986997999925666678897996898999999999999757997899967885078999999999851
Q ss_pred H---HHC-CCCCC----CCCCCCCCCCCCCCCEEEEECC-CCC--C-CCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 1---000-00001----2443221101688837999217-754--3-212233322101110021012221110000112
Q gi|254781099|r 139 G---YDV-QLGGN----IGLPILNLEYFSPNRFYVIECS-SYQ--I-ELTPTIDPSIGVLLNISPDHLDRHHTLENYVNI 206 (468)
Q Consensus 139 g---~~~-~~~GN----iG~p~~~~~~~~~~~~~V~E~S-SfQ--L-~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~a 206 (468)
T Consensus 617 ~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~~i~~PdiaVITNIg~aHLe~fgs~e~Ia~a 696 (953)
T PRK11929 617 QGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLAAIAAPTVALVTNAQREHQEFLHSVEAVARA 696 (953)
T ss_pred CCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHCCHHHHHHH
T ss_conf 77784388556743786667178757996346578765289622699860625897788744569987661899999999
Q ss_pred CCCEEEEC---CCCCCCCCCHHHHHHHHHCCCCC---CEEECCCCCCCCCCC-CEEECCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 21000101---34432247867899987401234---301103644322234-112124135414676421234558851
Q gi|254781099|r 207 KKKIVTMS---KHAIICINDHQCEKIAYDMNFIG---HSISRISSQSLQSDS-DLYIDESFLKCSATSEVIFDFSQETKK 279 (468)
Q Consensus 207 K~~i~~~~---~~~iln~dd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~ 279 (468)
T Consensus 697 K~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~ 776 (953)
T PRK11929 697 NGALINALPEDGIAVVNGDDPYAAIWAKLAGARRVLRFGLSLQPGLDVYAEDIVTQAAGTLCFVVTPAGSAYVDLPVPGE 776 (953)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCH
T ss_conf 99998315879799993886889999998457875999852589876899998986896499999789569999568979
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCC---C-CCCEEEEC
Q ss_conf 0111001101222102222211000000001345443321003430000023556755555532013---3-32001203
Q gi|254781099|r 280 HNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNE---K-RRIYWIAG 355 (468)
Q Consensus 280 HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~---~-~~i~lI~G 355 (468)
T Consensus 777 hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~iIDDsYNANP~Sm~aAl~~L~~~~~~~kiaVLG 856 (953)
T PRK11929 777 HNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQLSDGTVIIDDTYNANPDSMRAAIDVLARLPGPKRALVLG 856 (953)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999999999999939999999999866999999878999579979999784888999999999985287998699984
Q ss_pred CCCCCCCH-----HHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 21012206-----89899842--786899988998998886316898899879999999999999844898599945221
Q gi|254781099|r 356 GLSKSDDF-----STLFPFIS--KIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGC 428 (468)
Q Consensus 356 G~~K~~d~-----~~L~~~~~--~~~~~~liG~~~~~i~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~ 428 (468)
T Consensus 857 dM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~---~~l~~~d~VLVK--- 929 (953)
T PRK11929 857 DMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHAFGKA-ARACFASVDEIIAALR---GLLPSSDIVLIK--- 929 (953)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC-CEEEECCHHHHHHHHH---HHCCCCCEEEEE---
T ss_conf 850024578999999999999759999999865799998656846-5788399999999998---558999999997---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66313479899999999999863798
Q gi|254781099|r 429 ASFDQYNNFRERGFSFMSQVSEIPGI 454 (468)
Q Consensus 429 aS~d~f~~y~~RG~~F~~~v~~l~~~ 454 (468)
T Consensus 930 GS---------R~m~lE~iV~~l~~~ 946 (953)
T PRK11929 930 GS---------RFMRLERVVTAFSTN 946 (953)
T ss_pred CC---------CCCCHHHHHHHHHCC
T ss_conf 15---------604699999999729