HHsearch alignment for GI: 254781099 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=387.28 Aligned_cols=340 Identities=18% Similarity=0.217 Sum_probs=239.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC----------C-----------CCCCCCCCCEEEEE
Q ss_conf 15688689960345752157899999987310000000124432----------2-----------11016888379992
Q gi|254781099|r 109 SSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPI----------L-----------NLEYFSPNRFYVIE 167 (468)
Q Consensus 109 ~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~----------~-----------~~~~~~~~~~~V~E 167 (468)
T Consensus 107 ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~~~vmE 186 (953)
T PRK11929 107 PSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGADAVAME 186 (953)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 67588789997999799999999999986799889983245405876446789999489999999999997699799998
Q ss_pred CCCCCCC--CCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEE---CCCCCCCCCCHHHHHHHHHCCCCCCEEEC
Q ss_conf 1775432--122333221011100210122211100001122100010---13443224786789998740123430110
Q gi|254781099|r 168 CSSYQIE--LTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTM---SKHAIICINDHQCEKIAYDMNFIGHSISR 242 (468)
Q Consensus 168 ~SSfQL~--~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~---~~~~iln~dd~~~~~~~~~~~~~~~~~~~ 242 (468)
T Consensus 187 vSSHgL~q~Rv~gi~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l~~~~~aViN~Dd~~~~~l~~~~~~~~~~~~~ 266 (953)
T PRK11929 187 ASSHGLEQGRLDGIRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQWPPLGAAVINADDPAGERLLASLPAALLTGYA 266 (953)
T ss_pred ECHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEE
T ss_conf 33067764342087878899947976786654899999999999998741086699979888899999871278589993
Q ss_pred CCC--CCCC-CCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHH
Q ss_conf 364--4322-2341121241354146764212345588510111001101222102222211000000001345443321
Q gi|254781099|r 243 ISS--QSLQ-SDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTI 319 (468)
Q Consensus 243 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i 319 (468)
T Consensus 267 ~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~vpGRmE~v 346 (953)
T PRK11929 267 LQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPVDGRLERV 346 (953)
T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 36787748999999828986899997892799980686312499999999999983999999999886179988875996
Q ss_pred C---CCCCCEEECCCCCCCHHHHHHHHHCC------CCCCEEEEC-CCCCCCCHHH-HHHHHCCCCEEEEE------CCC
Q ss_conf 0---03430000023556755555532013------332001203-2101220689-89984278689998------899
Q gi|254781099|r 320 A---RLGHVIFINDSKATNLHSVIHAFLNE------KRRIYWIAG-GLSKSDDFST-LFPFISKIAKAYFI------GNS 382 (468)
Q Consensus 320 ~---~~~gv~iIDDS~atnp~a~~~Al~~~------~~~i~lI~G-G~~K~~d~~~-L~~~~~~~~~~~li------G~~ 382 (468)
T Consensus 347 ~~~~~~~~~~viVD-YAHTpdAl~~~L~~lr~~~~~~~rli~VfGcgGdRD~~KRp~Mg~iA~~~aD~viiT~DNPR~Ed 425 (953)
T PRK11929 347 GPTASAQGPLVVVD-YAHTPDALARALTALRPVAEANGRLVCVFGCGGNRDKGKRPEMGRIAAELADRVIVTSDNPRDEA 425 (953)
T ss_pred ECCCCCCCCEEEEE-CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf 15666789669998-67898999999999997614698099998987877610348999999984998998689989999
Q ss_pred HHHHHHHHHCCC----CEEEECCHHHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCC----CHHHHHHHHHHHHHHCC
Q ss_conf 899888631689----8899879999999999999844898599945-2216631347----98999999999998637
Q gi|254781099|r 383 AMLFFHHFGGKI----NSTLSKTLDQALKSVVRDVENVQLPSIVLFS-PGCASFDQYN----NFRERGFSFMSQVSEIP 452 (468)
Q Consensus 383 ~~~i~~~~~~~~----~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlS-Pa~aS~d~f~----~y~~RG~~F~~~v~~l~ 452 (468)
T Consensus 426 p~~I~~dI~~g~~~~~~~~~i~dR~~A---I~~ai~~a~~~D~vliaGKGhE~yQ~i~~~~~~f~Dre~~~~~~~~~~~ 501 (953)
T PRK11929 426 PEDIIDQILAGIPAGARALRQSDRALA---IMQAIWMAKPGDVILLAGKGHETYQDIGGRKLFFDDRQWARLALLLPHA 501 (953)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCHHHH---HHHHHHHCCCCCEEEEEECCCCCCEEECCEEECCCCHHHHHHHHHHHHH
T ss_conf 999999998565668866997799999---9999984799998999876865637879996237809999999986654