HHsearch alignment for GI: 254781099 and conserved domain: PRK11930

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00  E-value=0  Score=370.58  Aligned_cols=329  Identities=19%  Similarity=0.219  Sum_probs=248.4

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCEEEEECC-CCC--CC-CCCCCC
Q ss_conf             156886899603457521578999999873100000001----2443221101688837999217-754--32-122333
Q gi|254781099|r  109 SSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPNRFYVIECS-SYQ--IE-LTPTID  180 (468)
Q Consensus       109 ~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~V~E~S-SfQ--L~-~~~~~~  180 (468)
T Consensus       106 ~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~T~gn~Nn~IGvPLTll~l~~~~e~aVlEmG~s~~GEI~~L~~i~~  185 (824)
T PRK11930        106 KQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQMNEEHELGIFEAGISTMGEMEALQKIIK  185 (824)
T ss_pred             HHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             74899899994999789999999999745786852887668742589998649845808999907898146999953527


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC----CCCCEEE
Q ss_conf             221011100210122211100001122100010134432247867899987401234301103644322----2341121
Q gi|254781099|r  181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQ----SDSDLYI  256 (468)
Q Consensus       181 PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  256 (468)
T Consensus       186 P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~~~~i~n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (824)
T PRK11930        186 PTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDCDVIIYNGDNEEISNCIHKSNLTRREIAWSRTDSEAPLYISRSEKKE  265 (824)
T ss_pred             CCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECC
T ss_conf             99999907509876645899999999999762178179946857899999763367628998347866534666543058


Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf             24135414676421234558851011100110122210222221100000000134544332100343000002355675
Q gi|254781099|r  257 DESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNL  336 (468)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~iIDDS~atnp  336 (468)
T Consensus       266 ~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava~~lGv~~~~i~~~L~~~~p~~~Rlev~~g~~g~~iIdDsYNAnP  345 (824)
T PRK11930        266 FHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVALYLMYSADQITKRFARLEPVEMRLEVKEGINNCTLINDSYNSDL  345 (824)
T ss_pred             CCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCH
T ss_conf             81699999689069999369988999999999999998399999999998418965451379997998099956666998


Q ss_pred             HHHHHHHHCC-----CCCCEEEECCCCC-----CCCHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCEEEECCHHH
Q ss_conf             5555532013-----3320012032101-----220689899842--786899988998998886316898899879999
Q gi|254781099|r  337 HSVIHAFLNE-----KRRIYWIAGGLSK-----SDDFSTLFPFIS--KIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQ  404 (468)
Q Consensus       337 ~a~~~Al~~~-----~~~i~lI~GG~~K-----~~d~~~L~~~~~--~~~~~~liG~~~~~i~~~~~~~~~~~~~~~~~~  404 (468)
T Consensus       346 ~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~~i~~ligiG~~~~~~~~~~~-~~~~~~~~~~~~  424 (824)
T PRK11930        346 ASLDIALDFLERRKQSKKKTLILSDILQSGQSPEELYRKVAQLISSAKINRVIGIGEEISSEAKKFE-GIEKYFFKDTEA  424 (824)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC-CCCEEEECCHHH
T ss_conf             9999999999740357856999877443287607899999999997688789981889999998645-776589568999


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             9999999998448985999452216631347989999999999986379
Q gi|254781099|r  405 ALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG  453 (468)
Q Consensus       405 a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~  453 (468)
T Consensus       425 ~l~~~~~---~~~~~~~iLik---Ga---------r~~~~e~i~~~l~~  458 (824)
T PRK11930        425 FLASLEK---KKFSNELILIK---GS---------RKFQFEQISERLEL  458 (824)
T ss_pred             HHHCCCC---CCCCCCEEEEE---CC---------CCCCHHHHHHHHHH
T ss_conf             9742741---13689779980---55---------45668999999964