HHsearch alignment for GI: 254781099 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=0 Score=370.58 Aligned_cols=329 Identities=19% Similarity=0.219 Sum_probs=248.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCEEEEECC-CCC--CC-CCCCCC
Q ss_conf 156886899603457521578999999873100000001----2443221101688837999217-754--32-122333
Q gi|254781099|r 109 SSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPNRFYVIECS-SYQ--IE-LTPTID 180 (468)
Q Consensus 109 ~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~V~E~S-SfQ--L~-~~~~~~ 180 (468)
T Consensus 106 ~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~T~gn~Nn~IGvPLTll~l~~~~e~aVlEmG~s~~GEI~~L~~i~~ 185 (824)
T PRK11930 106 KQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQMNEEHELGIFEAGISTMGEMEALQKIIK 185 (824)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 74899899994999789999999999745786852887668742589998649845808999907898146999953527
Q ss_pred CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC----CCCCEEE
Q ss_conf 221011100210122211100001122100010134432247867899987401234301103644322----2341121
Q gi|254781099|r 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQ----SDSDLYI 256 (468)
Q Consensus 181 PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 256 (468)
T Consensus 186 P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~~~~i~n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PRK11930 186 PTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDCDVIIYNGDNEEISNCIHKSNLTRREIAWSRTDSEAPLYISRSEKKE 265 (824)
T ss_pred CCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECC
T ss_conf 99999907509876645899999999999762178179946857899999763367628998347866534666543058
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf 24135414676421234558851011100110122210222221100000000134544332100343000002355675
Q gi|254781099|r 257 DESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNL 336 (468)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~iIDDS~atnp 336 (468)
T Consensus 266 ~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava~~lGv~~~~i~~~L~~~~p~~~Rlev~~g~~g~~iIdDsYNAnP 345 (824)
T PRK11930 266 FHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVALYLMYSADQITKRFARLEPVEMRLEVKEGINNCTLINDSYNSDL 345 (824)
T ss_pred CCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCH
T ss_conf 81699999689069999369988999999999999998399999999998418965451379997998099956666998
Q ss_pred HHHHHHHHCC-----CCCCEEEECCCCC-----CCCHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 5555532013-----3320012032101-----220689899842--786899988998998886316898899879999
Q gi|254781099|r 337 HSVIHAFLNE-----KRRIYWIAGGLSK-----SDDFSTLFPFIS--KIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQ 404 (468)
Q Consensus 337 ~a~~~Al~~~-----~~~i~lI~GG~~K-----~~d~~~L~~~~~--~~~~~~liG~~~~~i~~~~~~~~~~~~~~~~~~ 404 (468)
T Consensus 346 ~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~~i~~ligiG~~~~~~~~~~~-~~~~~~~~~~~~ 424 (824)
T PRK11930 346 ASLDIALDFLERRKQSKKKTLILSDILQSGQSPEELYRKVAQLISSAKINRVIGIGEEISSEAKKFE-GIEKYFFKDTEA 424 (824)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC-CCCEEEECCHHH
T ss_conf 9999999999740357856999877443287607899999999997688789981889999998645-776589568999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999998448985999452216631347989999999999986379
Q gi|254781099|r 405 ALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453 (468)
Q Consensus 405 a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~ 453 (468)
T Consensus 425 ~l~~~~~---~~~~~~~iLik---Ga---------r~~~~e~i~~~l~~ 458 (824)
T PRK11930 425 FLASLEK---KKFSNELILIK---GS---------RKFQFEQISERLEL 458 (824)
T ss_pred HHHCCCC---CCCCCCEEEEE---CC---------CCCCHHHHHHHHHH
T ss_conf 9742741---13689779980---55---------45668999999964