HHsearch alignment for GI: 254781099 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.17 E-value=0.00065 Score=46.12 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=53.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-----------------H-----HHHHHHHCCCEEECCC------
Q ss_conf 89879998368548999999998598699981896-----------------4-----7889997898996453------
Q gi|254781099|r 7 RNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP-----------------C-----AVKQAKDMGIEVIDFR------ 58 (468)
Q Consensus 7 ~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~-----------------~-----~~~~l~~~g~~~~~~~------ 58 (468)
T Consensus 150 TGkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWd 229 (517)
T TIGR01317 150 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWD 229 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78668997567579999999853588389974367888630248887433738899999999874784201783004653
Q ss_pred C---------------CCCCCCCEEEECCCCCCCCCC
Q ss_conf 1---------------572258889988886856755
Q gi|254781099|r 59 E---------------IPWSIISFLVLSPGIALTGEN 80 (468)
Q Consensus 59 ~---------------~~~~~~d~vv~Spgi~~~~~~ 80 (468)
T Consensus 230 enskitnlsk~di~~~~L~~~fDAVVLa--~Ga~~pR 264 (517)
T TIGR01317 230 ENSKITNLSKKDISADELKEDFDAVVLA--TGATKPR 264 (517)
T ss_pred CCCCEECCCCCCCCHHHHHHHCCEEEEE--CCCCCCC
T ss_conf 4442000223426879987146938983--3788601