HHsearch alignment for GI: 254781099 and conserved domain: cd01424

>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=92.26  E-value=0.8  Score=24.80  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=54.7

Q ss_pred             HHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECC----CCC-------CCCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             9999999985986999818964788999789899645----315-------72258889988886856755788899999
Q gi|254781099|r   21 LSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDF----REI-------PWSIISFLVLSPGIALTGENAHWCVKLAN   89 (468)
Q Consensus        21 ~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~----~~~-------~~~~~d~vv~Spgi~~~~~~~~~~~~~a~   89 (468)
T Consensus        16 l~~ak~l~~lGf~i~AT~---GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~~~~~~~~dg~~IRr~Av   92 (110)
T cd01424          16 VEIAKRLAELGFKLVATE---GTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAAL   92 (110)
T ss_pred             HHHHHHHHHCCCEEEECC---HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             999999998899999871---69999986498640330056799768999977935899977889865742999999999


Q ss_pred             HCCCEEEEEHHHHHH
Q ss_conf             769809983034223
Q gi|254781099|r   90 QFNVEIIGDIELFVR  104 (468)
Q Consensus        90 ~~gi~v~s~~el~~~  104 (468)
T Consensus        93 ~~~Ip~~Tsi~~A~a  107 (110)
T cd01424          93 EYKVPYFTTLDTARA  107 (110)
T ss_pred             HCCCCEEECHHHHHH
T ss_conf             769999966999998