HHsearch alignment for GI: 254781099 and conserved domain: cd01424
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=92.26 E-value=0.8 Score=24.80 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECC----CCC-------CCCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999985986999818964788999789899645----315-------72258889988886856755788899999
Q gi|254781099|r 21 LSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDF----REI-------PWSIISFLVLSPGIALTGENAHWCVKLAN 89 (468)
Q Consensus 21 ~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~----~~~-------~~~~~d~vv~Spgi~~~~~~~~~~~~~a~ 89 (468)
T Consensus 16 l~~ak~l~~lGf~i~AT~---GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~~~~~~~~dg~~IRr~Av 92 (110)
T cd01424 16 VEIAKRLAELGFKLVATE---GTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAAL 92 (110)
T ss_pred HHHHHHHHHCCCEEEECC---HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999999998899999871---69999986498640330056799768999977935899977889865742999999999
Q ss_pred HCCCEEEEEHHHHHH
Q ss_conf 769809983034223
Q gi|254781099|r 90 QFNVEIIGDIELFVR 104 (468)
Q Consensus 90 ~~gi~v~s~~el~~~ 104 (468)
T Consensus 93 ~~~Ip~~Tsi~~A~a 107 (110)
T cd01424 93 EYKVPYFTTLDTARA 107 (110)
T ss_pred HCCCCEEECHHHHHH
T ss_conf 769999966999998