HHsearch alignment for GI: 254781099 and conserved domain: cd06318
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.15 E-value=0.91 Score=24.39 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEE
Q ss_conf 9999999859869998189647889997898996453157225888998888685675578889999976980998
Q gi|254781099|r 22 SAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIG 97 (468)
Q Consensus 22 s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~~~~~~~~a~~~gi~v~s 97 (468)
T Consensus 20 g~~~~a~~~G~~v~~~~~~~d~~~Q~~~-------i~~~i~~~vd~iii~~~---d~~~~~~~~~~a~~aGIPVv~ 85 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIAD-------VEDLLTRGVNVLIINPV---DPEGLVPAVAAAKAAGVPVVV 85 (282)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHH-------HHHHHHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999729999997699999999999-------99999769987998116---805669999999977998899