HHsearch alignment for GI: 254781099 and conserved domain: pfam08245
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=99.98 E-value=3.1e-33 Score=248.47 Aligned_cols=175 Identities=28% Similarity=0.338 Sum_probs=128.6
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCC-CCCCCEEEEECCCCCCCC---CCCCCCCCCEEEEE
Q ss_conf 603457521578999999873100000001----2443221101-688837999217754321---22333221011100
Q gi|254781099|r 118 VTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEY-FSPNRFYVIECSSYQIEL---TPTIDPSIGVLLNI 189 (468)
Q Consensus 118 VTGT~GKTTt~~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~-~~~~~~~V~E~SSfQL~~---~~~~~PdiavITNI 189 (468)
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~P~iaviTNi 80 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVITNI 80 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEECC
T ss_conf 93758689999999999983899899838847457799999766646996899983277710765527778999999457
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEECC---CCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCC-CEEECCC-EEEEC
Q ss_conf 21012221110000112210001013---4432247867899987401234301103644322234-1121241-35414
Q gi|254781099|r 190 SPDHLDRHHTLENYVNIKKKIVTMSK---HAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDS-DLYIDES-FLKCS 264 (468)
Q Consensus 190 ~~DHLd~~~s~e~y~~aK~~i~~~~~---~~iln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 264 (468)
T Consensus 81 ~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~~~~~~t~g~~~~~d~~~~~i~~~~~~~~~~~~~ 160 (188)
T pfam08245 81 SPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNAGAKVITFGLENEADDRAANIYVSSEGGKIVLFT 160 (188)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 65564662179999999999997299999999989888899999866984699856876560446789958996899996
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCHHHHH
Q ss_conf 6764212345588510111001101222
Q gi|254781099|r 265 ATSEVIFDFSQETKKHNIQNLVTSAVVC 292 (468)
Q Consensus 265 ~~~~~~~~~~~l~G~HNi~NalaAia~a 292 (468)
T Consensus 161 ~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 161 VPGGELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 2993899998866399999999999959