RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781099|ref|YP_003065512.1|
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
(468 letters)
>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 506 bits (1306), Expect = e-144
Identities = 204/459 (44%), Positives = 265/459 (57%), Gaps = 10/459 (2%)
Query: 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPW 62
++ F ++AVFGLG SGL+ A AL G VIAWDD+P + +A GI D R W
Sbjct: 4 VTGFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADW 63
Query: 63 SIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTN 122
S + LVLSPG+ LT HW V LA VE+IGDIELF RERR + +PFIA+TGTN
Sbjct: 64 SGFAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTN 123
Query: 123 GKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTIDPS 182
GKS+T ALI+H+LR+ G DVQ+GGNIG +L LE R YV+E SSYQI+L P++DP
Sbjct: 124 GKSTTTALIAHILREAGRDVQMGGNIGTAVLTLEPPPAGRVYVLELSSYQIDLAPSLDPD 183
Query: 183 IGVLLNISPDHLDRHHTLENYVNIKKKIVTMSK--HAIICINDHQCEKIAYDMNFIGHSI 240
+GVLLN++PDHLDRH T+E Y K+++ A+I ++D C IA + G +
Sbjct: 184 VGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGPDTAVIGVDDAYCRAIADRLEAAGRRV 243
Query: 241 SRISSQSLQSDSDLYIDESFL--KCSATSEVIFDFSQETK---KHNIQNLVTSAVVCMQL 295
RIS+ +D +Y D L I D HN QN + L
Sbjct: 244 VRISAGKPLAD-GVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAARAL 302
Query: 296 GLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAG 355
GL EEI L S GL HR++ + R G V+F+NDSKATN + A L+ RIYWIAG
Sbjct: 303 GLSPEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKA-LSSFDRIYWIAG 361
Query: 356 GLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVEN 415
G K +L PF +IAKAY IG +A F GG + + TL++A+ + D
Sbjct: 362 GKPKEGGIESLAPFFPRIAKAYLIGEAAEAFAATLGGAVPFEICGTLERAVAAAAADAAA 421
Query: 416 VQLPS-IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453
P +VL SP CASFDQ+ NF RG +F V+ +PG
Sbjct: 422 DGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVAALPG 460
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Length = 433
Score = 309 bits (794), Expect = 8e-85
Identities = 141/453 (31%), Positives = 206/453 (45%), Gaps = 38/453 (8%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHP-----CAVKQAKDMGIEVIDFREIP--WS 63
I + GLG++G + A L G V D P ++ Q + V+ +
Sbjct: 2 ILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLN 61
Query: 64 IISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNG 123
+V SPGI H V+ A + + ++GDIELF+R L P +A+TGTNG
Sbjct: 62 NADLVVKSPGIPP----DHPLVQAAAKRGIPVVGDIELFLR---LVPL--PVVAITGTNG 112
Query: 124 KSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTIDPSI 183
K++T +L+ H+L+ G LGGNIG P L + YV+E SS+Q+E T ++ P I
Sbjct: 113 KTTTTSLLYHLLKAAGLKAFLGGNIGTPALEVLDQEGAELYVLELSSFQLETTESLRPEI 172
Query: 184 GVLLNISPDHLDRHHTLENYVNIKKKIVT-MSKHAIICINDHQCEKIAYDMNFIGHSISR 242
++LNIS DHLD H + E+YV K KI ++ + +N I
Sbjct: 173 ALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWF 232
Query: 243 ISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETK---KHNIQNLVTSAVVCMQLGLKV 299
+ + + +LK E HN +N++ + + LGL +
Sbjct: 233 SVEKDAERGLCIRDGGLYLK---------PNDLEGSLLGLHNAENILAAIALAKSLGLNL 283
Query: 300 EEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSK 359
E I AL S GL HRL+ + + V F NDSKATN+H+ + A + I GG K
Sbjct: 284 EAILEALRSFKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFDNPVILIVGGDDK 343
Query: 360 SDDFSTLFPFISKIAK-AYFIGNSAMLF--FHHFGGKINSTLSKTLDQALKSVVRDVENV 416
DFS L P + K IG A + LS L ++L+ V+ V
Sbjct: 344 GADFSPLAPAAAGKVKAVLAIGEDAAKIAPLLK-----EAGLSVYLVESLEEAVQAAREV 398
Query: 417 -QLPSIVLFSPGCASFDQYNNFRERGFSFMSQV 448
+VL SP CASFDQ+ ++ ERG F V
Sbjct: 399 ASPGDVVLLSPACASFDQFKSYEERGEKFKELV 431
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 269 bits (690), Expect = 1e-72
Identities = 161/460 (35%), Positives = 239/460 (51%), Gaps = 37/460 (8%)
Query: 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCA----VKQAKDMGIEVIDFR 58
++S I VFGLG++G+S L+ + VI +DD + I +
Sbjct: 1 MNSHTKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNAIAALS-- 57
Query: 59 EIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAV 118
+ W + +VLSPGI LT H VK+A FN+ I DI+L + S FIA+
Sbjct: 58 DSRWQNLDKIVLSPGIPLT----HEIVKIAKNFNIPITSDIDLLFEK----SKNLKFIAI 109
Query: 119 TGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPT 178
TGTNGKS+T ALISH+L NG D + GNIG+P L + + YV+E SS+Q++L T
Sbjct: 110 TGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQAK--ASKDGYVLELSSFQLDLVKT 167
Query: 179 IDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVT-MSK--HAIICINDHQCEKI------ 229
I VLLNI+PDHLDRH ++ Y+ K KI M K +A+I I++ C +I
Sbjct: 168 FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQ 227
Query: 230 AYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSA 289
+ I S+++I + D D F + ++ F+ KHN +N+ S
Sbjct: 228 EQRIKLIPFSVTKILENGISVVDDKISDNFF--DDISFKLPFN-KNLQGKHNCENIAASY 284
Query: 290 VVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRR 349
V +G++ ++I ++ S L HR+Q I + ++ F NDSKATN S + + +
Sbjct: 285 AVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQS-IKALDN 343
Query: 350 IYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGG----KINSTLSKTLDQA 405
IYW+AGG+ K + P+ SKI KAYF G + +F + I L + D A
Sbjct: 344 IYWLAGGIPKEGGIEEIKPYFSKIKKAYFYGQAKEIFANTAKNIVDFVICDNLEQAFDLA 403
Query: 406 LKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFM 445
K V D N ++ +I L +P C+S+DQ+ NF ERG F+
Sbjct: 404 YKDAVGD--NAEVKNI-LLAPSCSSYDQFKNFEERGELFI 440
>gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 267 bits (684), Expect = 6e-72
Identities = 149/465 (32%), Positives = 217/465 (46%), Gaps = 60/465 (12%)
Query: 13 VFGLGRSGLSAACALKDSGVHVIAWD--DHPCAVKQAKDM---GIEV-----IDFREI-P 61
V GLGRSG++AA LK G V+ D D P +++ +++ GI V ++ P
Sbjct: 5 VIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP 64
Query: 62 WSI-ISFLVLSPGIALTGENAHWCVKLANQF---NVEIIGDIELFVRERRFSSLQS-PFI 116
W +V+SPGI W + +E+IG+IEL R +L+ P++
Sbjct: 65 WLDQPDLVVVSPGIP-------WDHPTLVELRERGIEVIGEIELAWR-----ALKHIPWV 112
Query: 117 AVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYF-SPNR----FYVIECSSY 171
+TGTNGK++ AL++H+L+ G + GNIG L S + V E SSY
Sbjct: 113 GITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAACELALLRSGKAQKPDWIVAELSSY 172
Query: 172 QIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAY 231
QIE +P + P IG+ +PDHL+RH TLENY IK ++ S+ I+ +D +
Sbjct: 173 QIESSPELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLERSEIRILNGDDPYLRQHR- 231
Query: 232 DMNFIGHSISR---ISSQSLQSDSD----LYIDESFLKCSATSEVIFDFS--QETKKHNI 282
S + S+Q S ++E ++ E +F S + HN+
Sbjct: 232 ------SSWPKGYWTSTQGKASLLGQADGWILEEGWVV--ERGEPLFPLSALKMPGAHNL 283
Query: 283 QNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHA 342
QNL+ + GL E I AL S G+ HRL+ I + + FINDSKATN +
Sbjct: 284 QNLLLAVAAARLAGLSAEAIAEALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVG 343
Query: 343 FLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYF-IGNSAMLFFH-----HFGGKINS 396
+ IAGG +K D S I A A G +A + G+
Sbjct: 344 LKAVPGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQRLQESGYTGEY-- 401
Query: 397 TLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERG 441
+ +TLD+A+ + +Q VL SP CASFDQY NF ERG
Sbjct: 402 EIVETLDEAVPRAFELAKELQ-AKSVLLSPACASFDQYKNFEERG 445
>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 235 bits (603), Expect = 1e-62
Identities = 132/471 (28%), Positives = 209/471 (44%), Gaps = 50/471 (10%)
Query: 6 FRNHSIAVFGLGRSGLSAACALKDSGVHVIAWD-----DHPCAVKQAKDMGIEVIDFREI 60
++N + V GL +SG +AA L G +V D ++P ++ + GI+VI
Sbjct: 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENP-EAQELLEEGIKVI-CGSH 60
Query: 61 PWSI----ISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFI 116
P + +V +PGI N V+ A + + II ++EL + ++P I
Sbjct: 61 PLELLDEDFDLMVKNPGIP--YTNP--MVEKALEKGIPIITEVEL-----AYLISEAPII 111
Query: 117 AVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNL-EYFSPNRFYVIECSSYQIEL 175
+TG+NGK++T LI +L+ G L GNIG P + + + + V+E SS+Q+
Sbjct: 112 GITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPASEVAQKATADDTLVMELSSFQLMG 171
Query: 176 TPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV-TMSKHAIICINDHQCEKIAYDMN 234
T P I V+ NI P HLD H T ENYV K I ++ + IN Q E
Sbjct: 172 IETFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEV----KE 227
Query: 235 FIGHSISRISSQSLQSDS--DLYIDESFL-----KCSATSEVIFDFSQETKKHNIQNLVT 287
+ + + S YI + L K A +++ HN++N +
Sbjct: 228 LAKQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVL-----PGSHNLENALA 282
Query: 288 SAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATN---LHSVIHAFL 344
+ LG+ E I+ L + G+ HRLQ + + F NDSKATN + F
Sbjct: 283 AIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGF- 341
Query: 345 NEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGK--INSTLSKTL 402
+ + +AGGL + ++F L P++ + G +A K I + +
Sbjct: 342 --NQPVVLLAGGLDRGNEFDELVPYLKNVKAMVVFGETAEK-LARAAEKAGITVVEADNV 398
Query: 403 DQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453
+ A+ E ++L SP CAS+DQY F ERG F+ V E+ G
Sbjct: 399 EDAVPKAYELSEPGD---VILLSPACASWDQYKTFEERGDEFIKAVEELKG 446
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 234 bits (598), Expect = 6e-62
Identities = 135/483 (27%), Positives = 217/483 (44%), Gaps = 74/483 (15%)
Query: 6 FRNHSIAVFGLGRSGLSAACALKDSGVHVIAWD-----DHPCAVKQAKDMGIEVIDFREI 60
+ + V G G SGL+ A LK G VI D A+++ ++GIE++ E
Sbjct: 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELV-LGEY 61
Query: 61 P-WSIISF--LVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIA 117
P + +V+SPG+ L V A++ +E+IG++EL R + +P +A
Sbjct: 62 PEEFLEGVDLVVVSPGVPLDSP----PVVQAHKKGIEVIGEVELAYRFSK-----APIVA 112
Query: 118 VTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLP-ILNLEYFSPNRFYVIECSSYQIELT 176
+TGTNGK++T L+ + + G + GNIG P I +E + + V E SS+Q+E
Sbjct: 113 ITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAVEEYGEDDIIVAEVSSFQLETI 172
Query: 177 PTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFI 236
P +G +LNI+PDHLDRH T+ENY+ K +I + YD
Sbjct: 173 KEFKPKVGCILNITPDHLDRHKTMENYIKAKARI-------FENQRPSDYTVLNYDDPRT 225
Query: 237 GHSISRISSQ----SLQSDSD--LYIDESFLKCSATSEVIFDFSQETKK----------- 279
+ ++ S +S + +++ +++ + ++
Sbjct: 226 RSLAKKAKARVIFFSRKSLLEEGVFVKN--------GKIVISLGGKEEEVIDIDEIFIPG 277
Query: 280 -HNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHS 338
HN++N + + LG+ + I L + G+ HR++ +A + V FINDSK TN +
Sbjct: 278 EHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDA 337
Query: 339 VIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAK-----------AYFIGNSAMLFF 387
I A + I IAGG K DF F + A I +A +
Sbjct: 338 AIKALEAYETPIVLIAGGYDKGSDFDE---FAKAFKEKVKKLILLGETAQEIAEAARKY- 393
Query: 388 HHFGGKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQ 447
G N ++TL++A V + E + +VL SP CAS+D + NF ERG F
Sbjct: 394 ----GFDNILFAETLEEA---VKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKEL 446
Query: 448 VSE 450
V E
Sbjct: 447 VLE 449
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 219 bits (559), Expect = 2e-57
Identities = 139/465 (29%), Positives = 212/465 (45%), Gaps = 43/465 (9%)
Query: 9 HSIAVFGLGRSGLSAACALKDSGVHVIAWD--DHP--CAVKQAKDMGIEVIDFREIPWSI 64
V GLG++GLS L G+ D + P + +E+ +
Sbjct: 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELR-CGGFDCEL 65
Query: 65 I---SFLVLSPGIAL-TGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG 120
+ S +++SPG+AL T ++ A +E+IGDIELF RE ++P IA+TG
Sbjct: 66 LVQASEIIISPGLALDTPA-----LRAAAAMGIEVIGDIELFARE-----AKAPVIAITG 115
Query: 121 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID 180
+NGKS+ L+ + + G V +GGNIG P L+L P YV+E SS+Q+E T +++
Sbjct: 116 SNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPALDLLSDDPE-LYVLELSSFQLETTHSLN 174
Query: 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI 240
+ +LNIS DH+DR+ LE Y K +I +K + +D A + +
Sbjct: 175 AEVATVLNISEDHMDRYSDLEAYHQAKHRIYRGAKQVVFNRDD------ALTRPLVPDNQ 228
Query: 241 SRISSQSLQSDSDLY--IDESFLKCSA--TSEVIFDFSQETK---KHNIQNLVTSAVVCM 293
+S D D + + A ++ +E K HN+ N + + +
Sbjct: 229 PCLSFGLNAPDFDEWGLREGDGETYLAHGFERLM--PVRELKLRGSHNLANALAALALGE 286
Query: 294 QLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAF--LNE--KRR 349
GL E + L + GL HR + + + V + NDSK TN+ + + A L + +
Sbjct: 287 AAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGK 346
Query: 350 IYWIAGGLSKSDDFSTLFPFISKIAKAY-FIGNSAMLFFHHFGGKINSTLSKTLDQALKS 408
+ IAGG K DFS L ++K +A IG A GG + TL +A
Sbjct: 347 LVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAALGGAVPLVRVATLAEA--- 403
Query: 409 VVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453
V + E Q IVL SP CAS D + NF RG F V + G
Sbjct: 404 VAKAAELAQAGDIVLLSPACASLDMFKNFEARGDDFRQAVEALAG 448
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 209 bits (533), Expect = 2e-54
Identities = 141/472 (29%), Positives = 216/472 (45%), Gaps = 78/472 (16%)
Query: 6 FRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIP---- 61
++ + + GLG +GLS GV VID R P
Sbjct: 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTP------------------RVIDTRITPPGLD 45
Query: 62 ----------------WSIISFL-VLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVR 104
W + + L V SPGIAL AH + A +EI+GDIELF R
Sbjct: 46 KLPENVERHTGSLNDEWLLAADLIVASPGIAL----AHPSLSAAADAGIEIVGDIELFCR 101
Query: 105 ERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFY 164
E Q+P +A+TG+NGKS+ L+ + + G+ V +GGNIGLP L+L Y
Sbjct: 102 E-----AQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPALSL-LDQECELY 155
Query: 165 VIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHT-LENYVNIKKKIVTMSKHAIICIND 223
V+E SS+Q+E T ++ + +LN++ DH+DR+ L+ Y K +I +K ++ +D
Sbjct: 156 VLELSSFQLETTSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADD 215
Query: 224 HQCEKIAYDMNFIGHSISRISSQSLQSDSDL--YIDESFLKCSATSEVIFDFSQE--TKK 279
A M G +S D L E++L+ E + + + + +
Sbjct: 216 ------ALTMPIRGADKRCVSFGVNMGDYHLNRQQGETWLR--VKGEKVLNTKEMKLSGQ 267
Query: 280 HNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSV 339
HN N + + + +G+ +AL + GL HR Q + V +INDSKATN+ S
Sbjct: 268 HNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEHNGVRWINDSKATNVGST 327
Query: 340 IHAF--LNEKRRIYWIAGGLSKSDDFSTLFPFISKIA-KAYFIG----NSAMLFFHHFGG 392
A L+ ++ + GG KS DFS L +++ + Y G A L
Sbjct: 328 EAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNIRLYCFGRDGAQLAAL------R 381
Query: 393 KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSF 444
S L++T++QA++ + VQ +VL SP CAS DQ+ NF +RG F
Sbjct: 382 PEVSQLTETMEQAMRLIAP---RVQPGDMVLLSPACASLDQFKNFEQRGNEF 430
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 445
Score = 207 bits (529), Expect = 4e-54
Identities = 131/460 (28%), Positives = 214/460 (46%), Gaps = 29/460 (6%)
Query: 5 SFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCA--VKQAKDM--GIEVI--DFR 58
+F+N I V GLG +G+S L+ +G V A+D V Q M G+ +
Sbjct: 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLK 61
Query: 59 EIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAV 118
+ + L LSPGI+ ++ Q ++GDIEL + IA+
Sbjct: 62 DALDNGFDILALSPGISE----RQPDIEAFKQNGGRVLGDIELLADI--VNRRGDKVIAI 115
Query: 119 TGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNR---FYVIECSSYQIEL 175
TG+NGK++ +L+ ++ K G D + GNIG P+L E + +V+E SS+Q+E
Sbjct: 116 TGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWVLELSSFQLEN 175
Query: 176 TPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNF 235
T ++ P+ +LNIS DHLDR+ L +Y + K KI ++ +D C M
Sbjct: 176 TESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQVLNADDAFCRA----MKR 231
Query: 236 IGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFS--QETKKHNIQNLVTSAVVCM 293
G + S L+ ++D +++ + +E + HN N++ + +C
Sbjct: 232 AGREVKWFS---LEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCE 288
Query: 294 QLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWI 353
+GL E + + + GL HR++ I V+FI+DSK TN+ + A + ++ I
Sbjct: 289 AVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVI 348
Query: 354 AGGLSKSDDFSTLFPFISKIAKAYF-IGNSAMLFFHHFGG-KINSTLSKTLDQALKSVVR 411
GG+ K DF+ L ++ AK F IG A G +N T TL++A++ R
Sbjct: 349 LGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNLTDCATLEEAVQ---R 405
Query: 412 DVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451
+ IVL SP CASFD + + R F+ +
Sbjct: 406 AYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL 445
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 199 bits (509), Expect = 9e-52
Identities = 125/476 (26%), Positives = 205/476 (43%), Gaps = 35/476 (7%)
Query: 4 SSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWD--DHPCAVKQAKDMGIEVIDFREIP 61
S ++ + V GLG SG +AA AL + G V D D A + R P
Sbjct: 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP 71
Query: 62 WSII----SFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIA 117
+ +V SPG + A + + G++EL R R +P++A
Sbjct: 72 GPTLPEDTDLVVTSPGWRPD----APLLAAAADAGIPVWGEVELAWRLRDPDR-PAPWLA 126
Query: 118 VTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRF--YVIECSSYQIEL 175
VTGTNGK++TV +++ +LR G GNIG P+L+ P + +E SS+Q+
Sbjct: 127 VTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTPVLD-AVRDPEGYDVLAVELSSFQLHW 185
Query: 176 TPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICIN---DHQCEKIAYD 232
+P++ P +LN++PDHLD H ++E Y K +I + C+ D E + +
Sbjct: 186 SPSVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARI--YEGTTVACVYNVADPATEDLVEE 243
Query: 233 MNF------IGHSISRISSQSLQSDSDLYIDESFL---KCSATSEVIFDFSQETKKHNIQ 283
+ IG ++ L + +D +F+ + SA + + HNI
Sbjct: 244 ADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIA 303
Query: 284 NLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAF 343
N + +A + G+ ++ L + HR++ +A V +++DSKATN H+ A
Sbjct: 304 NALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAA-AS 362
Query: 344 LNEKRRIYWIAGGLSKSDDFSTLFP-FISKIAKAYFIGNSAML----FFHHFGGKINSTL 398
L + WIAGGL+K DF L ++ IG H +
Sbjct: 363 LAAYPSVVWIAGGLAKGADFDDLVRRAAGRLRGVVLIGADRAEIAEALARHAPDVPVVEV 422
Query: 399 SKTLDQALKSVVRDVENVQLP-SIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453
+T A+ V + P VL +P AS D + ++ RG +F + V + G
Sbjct: 423 DRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDMFTDYAARGDAFAAAVRALLG 478
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 191 bits (486), Expect = 4e-49
Identities = 132/471 (28%), Positives = 217/471 (46%), Gaps = 83/471 (17%)
Query: 9 HSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIP------- 61
++ V GLG +GLS L K + ++VID RE P
Sbjct: 8 KNVVVVGLGITGLSVVKHL----------------RKYQPQLTVKVIDTRETPPGQEQLP 51
Query: 62 -------------WSIISFLVL-SPGIAL-TGENAHWCVKLANQFNVEIIGDIELFVRER 106
W + + LV+ +PGIAL T E ++ + ++GDIELF
Sbjct: 52 EDVELHSGGWNLEWLLEADLVVTNPGIALATPE-----IQQVLAAGIPVVGDIELFAW-- 104
Query: 107 RFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPN-RFYV 165
++ P IA+TG+NGKS+ L + + G V +GGNIG+P L+L + YV
Sbjct: 105 ---AVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPALDL--LEQDAELYV 159
Query: 166 IECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQ 225
+E SS+Q+E T ++ LN+S DH+DR+ +E+Y K +I ++ A++ +D Q
Sbjct: 160 LELSSFQLETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAELAVVNRDDKQ 219
Query: 226 CEKIAYDMNFIGHSISRISSQSLQSDSDLYI---DESFLKCSATSEVIFDFSQETKKHNI 282
++ + + Q ++ + L + V +HN+
Sbjct: 220 TYPDHAELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLV--------GRHNV 271
Query: 283 QNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHA 342
N++ + G+ + AL S GLTHR Q +A + ++NDSKATN+ S + A
Sbjct: 272 ANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAA 331
Query: 343 F--LNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKI-----N 395
L + ++Y + GG+ K DFS L P ++ + N + F G + +
Sbjct: 332 LSGLEIEGKLYLLVGGVGKGADFSPLKPVLATL-------NLQLCCFGEDGDQFMPLHPS 384
Query: 396 STLSKTLDQALKSVVRDVENVQLPS--IVLFSPGCASFDQYNNFRERGFSF 444
+ T++ A++S+ + QL S +V+ SP CASFDQ+ NF RG +F
Sbjct: 385 ARRFDTMEDAIESI-----SPQLKSGDMVMLSPACASFDQFKNFMARGDAF 430
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 468
Score = 159 bits (405), Expect = 9e-40
Identities = 124/494 (25%), Positives = 207/494 (41%), Gaps = 69/494 (13%)
Query: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEV------ 54
M++S +A++G GR G +A AL+ A C +A+++G
Sbjct: 1 MRISQLEGRRVALWGWGREGRAAYRALRAHLPAQ-ALTLF-CNAVEAREVGALADAALLV 58
Query: 55 ---IDFREIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSL 111
+ + + +V SPGI+ + A + IG L+ E
Sbjct: 59 ETEASAQRL--AAFDVVVKSPGISPYRP---EALAAAAR-GTPFIGGTALWFAEHAARDG 112
Query: 112 QSPF-IAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPN-RFYVIECS 169
P + VTGT GKS+T AL++H+LR G+ L GNIG+P+L + P ++ IE S
Sbjct: 113 VVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVPLLEVLAPQPAPEYWAIELS 172
Query: 170 SYQI-ELTPT-IDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCE 227
SYQ ++ + P + V+LN+ P+HLD H Y K +VT + I +N
Sbjct: 173 SYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRPRIALLN----- 227
Query: 228 KIAYDMNFIGHSISRISSQSLQSDSDL----YIDESFLKCSAT---SEVIFDFSQE--TK 278
A D R+++ L DS++ + D ++ + +FD +
Sbjct: 228 --AAD--------PRLAALQL-PDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPG 276
Query: 279 KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHS 338
+HN NL LGL + A L +RLQ + + ++NDS +T H+
Sbjct: 277 RHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTTPHA 336
Query: 339 VIHAF-LNEKRRIYWIAGGLSKSDDFSTLFPFISKIA-----KAYFIGNS-----AMLFF 387
+ A RR+ + GG + D++ F + +A + +G + A+L
Sbjct: 337 SLAALDCFAGRRVALLVGGHDRGLDWT---DFAAHMAQRAPLEIVTMGANGPRIHALLAP 393
Query: 388 HHFGGKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSF--- 444
G+ + L A++ + R Q +VL SPG SF Y ++ RG F
Sbjct: 394 LAAAGRFGLHAADDLAHAVR-LARTALGAQ-GGVVLLSPGAPSFGAYRDYVARGRHFAQL 451
Query: 445 ----MSQVSEIPGI 454
+ +S I G+
Sbjct: 452 AGFDPAAISAIAGL 465
>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 418
Score = 156 bits (396), Expect = 1e-38
Identities = 126/462 (27%), Positives = 200/462 (43%), Gaps = 70/462 (15%)
Query: 8 NHSIAVFGLGRSGLSAACALKDSGVHVIAWDD-----HPCAVKQAKD-MGIEVIDFREIP 61
+ V GLG +G S A L GV+VI D C + E E P
Sbjct: 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAE-----EFP 57
Query: 62 WSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGT 121
+ +V SPGI + H V+ A ++ ++ DI+L + F+ + P + +TG+
Sbjct: 58 -EQVDLVVRSPGI----KKEHPWVQAAIASHIPVVTDIQLAFQTPEFT--RYPSLGITGS 110
Query: 122 NGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTIDP 181
GK++T+ + H+L++ G GNIG+PIL+ R V+E SS+Q+ P
Sbjct: 111 TGKTTTILFLEHLLKRLGIPAFAMGNIGIPILDGMQQPGVR--VVEISSFQLADQEKSYP 168
Query: 182 --SIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHS 239
S G++LNIS +HLD H L Y K+ I
Sbjct: 169 VLSGGMILNISDNHLDYHGNLSAYFQAKQNI----------------------------- 199
Query: 240 ISRISSQSLQSDSDLYIDE------SFLKCSATSEVIFDFSQETKK---HNIQNLVTSAV 290
++ L++ DL++ + S+L+ + D K H+ N +
Sbjct: 200 -----AKCLRNPDDLWVGDERSYGHSYLEYVQEIMRLLDKGSALKPLYLHDRYNYCAAYA 254
Query: 291 VCMQLG-LKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRR 349
+ ++ + E A+ + HR++ + V +INDSKAT + +V A L +
Sbjct: 255 LANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVGNQ 314
Query: 350 IYWIAGGLSKSDDFSTLFPFISKIAKAYF-IGNSAMLFFHHFGGKINSTLSKTLDQALKS 408
+ I GG +K DFS+L P + + AK +G K T+ K L +A+ S
Sbjct: 315 VIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEIAQALSEKFPLTVVKDLQEAV-S 373
Query: 409 VVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSE 450
+ E Q ++L SPGCASFDQ+ +F ERG F V
Sbjct: 374 CAQ--EIAQPGDVILLSPGCASFDQFRSFEERGAMFKQLVGM 413
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 458
Score = 149 bits (379), Expect = 1e-36
Identities = 99/381 (25%), Positives = 168/381 (44%), Gaps = 48/381 (12%)
Query: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPIL 153
I ++E F++ + VTG++GK++T LI +L++ GY +GGNIG P+
Sbjct: 103 YITSEMEEFIKYCP-----AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF 157
Query: 154 -NLEYFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVT 212
N+E V+E SS+Q+ +T + P + V+ N+SP+HLD H +E Y++ KK I
Sbjct: 158 SNIEEIKEEDKVVLELSSFQL-MTMDVSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFK 216
Query: 213 -MSKHAIICIN-DHQCEKIAYDMNFIGHSISRISSQSLQ---------SDSDLYIDESFL 261
S++ ++ +N D++ + + S + + LYI
Sbjct: 217 YQSENDLLVLNKDNEITN-----GMEKEAKGDVVKFSRKEKVYEGAYLKNGKLYIRG--- 268
Query: 262 KCSATSEVIFDFSQETK---KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQT 318
EV + K HN++NL+ A + + +E +K+ + G+ HR +
Sbjct: 269 -----KEVC--KKDDIKLKGMHNVENLLA-AFCAVNDDVSIESMKKVATTFSGVEHRCEF 320
Query: 319 IARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFI-SKIAKAY 377
+ + V + NDS A++ + ++ + IAGG K F L KI
Sbjct: 321 VREINGVKYYNDSIASSPTRTLAGLKAFEKPVILIAGGYDKKIPFEPLAEEGYEKIKTLI 380
Query: 378 FIGNSAMLFFHHF-------GGKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCAS 430
+G + F G I + +L++A+K E IV SP CAS
Sbjct: 381 LMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAEK---GDIVTLSPACAS 437
Query: 431 FDQYNNFRERGFSFMSQVSEI 451
FD + NF RG F V+ +
Sbjct: 438 FDMFPNFEIRGNKFKEIVNNL 458
>gnl|CDD|178896 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 148 bits (375), Expect = 3e-36
Identities = 132/468 (28%), Positives = 213/468 (45%), Gaps = 46/468 (9%)
Query: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAV-KQAKDMGIEVIDFRE 59
L + + V G G SG A L + G V+ DD+ A K + G+ I E
Sbjct: 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAE 67
Query: 60 IPWSIISF--LVLSPGIALTGENAHW-----CVKLANQFNVEIIGDIELFVRERRFSSLQ 112
+ SF +V SPG W + A +E+IGD+EL R +
Sbjct: 68 ASDQLDSFSLVVTSPG---------WRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFG 118
Query: 113 SP--FIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPI---LNLEYFSPNR--FYV 165
P ++AVTGTNGK++T A+++ ++++ G+ Q GNIG+P+ L + R V
Sbjct: 119 EPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVPVSAALV----AQPRIDVLV 174
Query: 166 IECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQ 225
E SS+Q+ +PT+ P +GV+LN++ DH+D H ++ +Y K K++ A+I +D
Sbjct: 175 AELSSFQLHWSPTLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR-GPVAVIGADDEY 233
Query: 226 CEKIAYDM---NFIGHSISRISSQSLQSDSDLYIDESFLKCS--ATSEVIFDFSQETKKH 280
++ IG ++ ++ + +D +F + A++E I
Sbjct: 234 VVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGI----SPAGPA 289
Query: 281 NIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVI 340
+ + + +A V G+ E I RAL S HR Q +A G V +I++SKATN H+
Sbjct: 290 GVLDALAAAAVARSQGVAPEAIARALSSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAAD 349
Query: 341 HAFLNEKRRIYWIAGGLSKSDDFSTLFPFIS-KIAKAYFIGNS-----AMLFFHHFGGKI 394
A L + W+AGG K D L + +I A +G A L H +
Sbjct: 350 AA-LAGHESVVWVAGGQLKGADIDDLIRTHAPRIKAAVVLGVDRAEIVAALAEHAPDAPV 408
Query: 395 NSTLSKTLDQALKSVVRDVENVQLP-SIVLFSPGCASFDQYNNFRERG 441
T S ++A++ V ++ P VL +P AS D Y +RG
Sbjct: 409 TVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDMYTGMGQRG 456
>gnl|CDD|179652 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 401
Score = 140 bits (354), Expect = 1e-33
Identities = 110/458 (24%), Positives = 194/458 (42%), Gaps = 76/458 (16%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVL 70
I++FG G++ + A LK G I +DD + G ++ + + +
Sbjct: 3 ISLFGYGKTTKALAKFLKKFGGVDI-FDDK-FTESHKDEEGNLLLPSNDFDPNKSDLEIP 60
Query: 71 SPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVAL 130
SPGI + H ++ A +I + + F FS I ++GTNGK++T +
Sbjct: 61 SPGIPPS----HPLIQKAKN----LISEYDYFYDVMPFS------IWISGTNGKTTTTQM 106
Query: 131 ISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTIDPSIGVLLNIS 190
+H+L + GGNIG P+ L+ + +V+E SS+ + T P+I +LL I+
Sbjct: 107 TTHLLED--FGAVSGGNIGTPLAELDKNAK--IWVLETSSFTLHYTNKAKPNIYLLLPIT 162
Query: 191 PDHLDRHHTLENYVNIKKKIVTMSKH---AIICINDHQCEKIAYDMNFIGHSISRISSQS 247
PDHL H + ENYV K K + AI+ K + I +
Sbjct: 163 PDHLSWHGSFENYVKAKLKPLKRMNEGDVAIL-------PKKFKNTPTKAQKIFYEDEED 215
Query: 248 LQ-----SDSDLYIDESFLKCS----ATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLK 298
L + FL + A +++FD E + K
Sbjct: 216 LAEKFGIDSEKINFKGPFLLDALLALAVYKILFD---ELDYERLNAFKIGK-------HK 265
Query: 299 VEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLN-EKRRIYWIAGGL 357
+EE + RL +++DSKATN+ + + A + ++I+ I GG
Sbjct: 266 LEEFRDKQ-------------GRL----WVDDSKATNVDATLQALKRYKDKKIHLILGGD 308
Query: 358 SKSDDFSTLFPFISKI-AKAYFIGNSA---MLFFHHFGGKINSTLSKTLDQALKSVVRDV 413
K D + LF F+ + + Y IG++ F I + + + L++A++ + +
Sbjct: 309 DKGVDLTPLFEFMKNLNIELYAIGSNTEKIQALAKEFN--IKAFVCEFLEKAVEEIKK-- 364
Query: 414 ENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451
++ + L SP AS DQ+ +++ERG F + V ++
Sbjct: 365 -VLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLKL 401
>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 488
Score = 116 bits (292), Expect = 1e-26
Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 10 SIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISF-- 67
+ V G G +G + AL G DD P A++ + G+ + + I +
Sbjct: 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYAL 73
Query: 68 LVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSP--FIAVTGTNGKS 125
+V SPG T + A V I GD+EL R P ++ VTGTNGK+
Sbjct: 74 VVTSPGFRPTAP----VLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKT 129
Query: 126 STVALISHVLRKNGYDVQLGGNIGLPILN-LEYFSPNRFYVIECSSYQIELTPTIDPSIG 184
+T +++ +L G L GNIG P+L+ L+ P +E SS+Q+ P++ P G
Sbjct: 130 TTTSMLHAMLIAAGRRSVLCGNIGSPVLDVLD--EPAELLAVELSSFQLHWAPSLRPEAG 187
Query: 185 VLLNISPDHLDRHHTLENYVNIKKKIVT 212
+LNI+ DHLD H T+ Y K + +T
Sbjct: 188 AVLNIAEDHLDWHGTMAAYAAAKARALT 215
Score = 58.6 bits (142), Expect = 3e-09
Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 40/195 (20%)
Query: 295 LGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSV---IHAFLNEKRRIY 351
+G+ I AL S HR + +A + +++DSKATN H+ I A+ R+
Sbjct: 298 VGVPAGAIADALASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAY----PRVV 353
Query: 352 WIAGGLSKSDDFSTLFPFI-SKIAKAYFIG--------------------------NSAM 384
WIAGGL K L + S++ A IG ++ M
Sbjct: 354 WIAGGLLKGASVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGM 413
Query: 385 L----FFHHFGGKINSTLSKTL-DQALKSVVRDVENVQLP-SIVLFSPGCASFDQYNNFR 438
+ +TL D + + V + P VL +P ASFDQ+ +
Sbjct: 414 PATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLARPGDTVLLAPAGASFDQFTGYG 473
Query: 439 ERGFSFMSQVSEIPG 453
+RG +F + V
Sbjct: 474 DRGDAFAAAVRAAIR 488
>gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 498
Score = 115 bits (290), Expect = 2e-26
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 13 VFGLGRSGLSAA--CALKDSGVHVIAWDDHP--CAVKQAKDMGIEVI--DFREIPWSIIS 66
V GLG SGL+ A CA + + V + P A +A+ E + F +
Sbjct: 12 VLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVD 71
Query: 67 FLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRF--SSLQSP-FIAVTGTNG 123
+ LSPG++ V A + + + G+IELF + +S +P +A+TGTNG
Sbjct: 72 LVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNG 131
Query: 124 KSSTVALISHVLRKNGYDVQLGGNIGLPILN-----LEYFSPNRFYVIECSSYQIELTPT 178
K++T AL + + G V + GNI L+ ++ + +V+E SS+Q+E T T
Sbjct: 132 KTTTTALTGLLCERAGKKVAVAGNISPAALDKLMEAIDAGALPDVWVLELSSFQLETTHT 191
Query: 179 IDPSIGVLLNISPDHLDRHHTLENYVNIKKKI 210
+ P +LNI+ DHLD H ++ Y K +I
Sbjct: 192 LAPDAATVLNITQDHLDWHGSMAAYAAAKARI 223
Score = 92.8 bits (231), Expect = 2e-19
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 280 HNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSV 339
HN N + + + +GL + L G HR++ +A + V + +DSK TN+ +
Sbjct: 320 HNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGAT 379
Query: 340 IHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKA-YFIGNSAMLFFHHFGGKINSTL 398
+ A +R+ IAGG K DFS L +++ A+A IG A I + L
Sbjct: 380 VAALDGLAQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDA--------PAIRAAL 431
Query: 399 S---------KTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVS 449
+ TL++A V Q VL SP CAS D + N+ R F + V
Sbjct: 432 AGTGVPLVDAATLEEA---VRAAAALAQPGDAVLLSPACASLDMFRNYAHRAEVFRAAVE 488
Query: 450 EIP 452
E+
Sbjct: 489 ELA 491
>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain.
Length = 188
Score = 115 bits (289), Expect = 3e-26
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 25/194 (12%)
Query: 118 VTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPN-RFYVIECSSYQ 172
+TGTNGK++T LI+ +L G V GGN IGLP+L + V+E SS+
Sbjct: 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFG 60
Query: 173 IE---LTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVT-MSKHAIICIN--DHQC 226
+ L P I V+ NISPDHLD H T+ENY K +I + + I IN D +
Sbjct: 61 LGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPEL 120
Query: 227 EKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKK------- 279
K + + +++ + L++++D ++ V+F +
Sbjct: 121 AKRLKN------AGAKVITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPG 174
Query: 280 -HNIQNLVTSAVVC 292
HN+ N + +
Sbjct: 175 RHNVYNALAALAAA 188
>gnl|CDD|178894 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 83.6 bits (208), Expect = 9e-17
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 50/224 (22%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPN-------------- 161
I VTGTNGK++T L++ +LR G L G +G I S
Sbjct: 98 IGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAE 157
Query: 162 ------RFYVIECSS--------YQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIK 207
+ +E SS ++ + V N+S DHLD H T+E+Y+ K
Sbjct: 158 LVDAGVTYAAMEVSSHALDQGRVDGLKF------DVAVFTNLSRDHLDYHGTMEDYLAAK 211
Query: 208 KKIVTMSK-HAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSAT 266
++ + A+I +D ++ + S+ + +DL + ++ + +
Sbjct: 212 ARLFSELGLAAVINADDEVGRRLLALPDAYAVSM---------AGADLRATD--VEYTDS 260
Query: 267 -SEVIFDFSQETK---KHNIQNLVTSAVVCMQLGLKVEEIKRAL 306
E+ + N+ NL+ + + LG+ +E+ AL
Sbjct: 261 GQTFTLVTEVESPLIGRFNVSNLLAALAALLALGVPLEDALAAL 304
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A
close homolog, scoring just below the trusted cutoff, is
found (with introns) in Arabidopsis thaliana. Its role
is unknown.
Length = 464
Score = 82.4 bits (204), Expect = 2e-16
Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 47/245 (19%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPIL-NLEYFSPNR------------ 162
I VTGTNGK++T +LI+ +LR G L G IG + N +P
Sbjct: 88 IGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQST 147
Query: 163 ----------FYVIECSSYQIELTPTIDPS--IGVLLNISPDHLDRHHTLENYVNIKKKI 210
+ V+E SS+ + V N+S DHLD H T+ENY K +
Sbjct: 148 LAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFAAKASL 207
Query: 211 VT---MSKHAIICINDHQCEKIAYDMNFIGHS-----ISRISSQSLQSDSDLYIDESFLK 262
T + + A+I ++D Y F+ +S I+ + D+ I +S
Sbjct: 208 FTELGLKRFAVINLDD------EYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYS 261
Query: 263 CSATSEVIFDFSQETKKH-------NIQNLVTS-AVVCMQLGLKVEEIKRALLSCGGLTH 314
+ E H N+ NL+ + A + G+ +E+I AL G+
Sbjct: 262 FEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDIVAALEKFRGVPG 321
Query: 315 RLQTI 319
R++ +
Sbjct: 322 RMELV 326
>gnl|CDD|179018 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase;
Provisional.
Length = 461
Score = 82.1 bits (204), Expect = 3e-16
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 67/251 (26%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDV---------QLGGNIGLPILNLEYFSPNRFYVI 166
IAV GT+GK++T +L++HVL + G D G N L N +YF V
Sbjct: 110 IAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGTNARLG--NSDYF------VA 161
Query: 167 E-CSS------YQIELTPTIDPSIGVLLNISPDHLDRHHTLENYV--------NIKKKIV 211
E S P I ++ NI DHLD + E+ N+
Sbjct: 162 EADESDRSFLKLH--------PDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGA 213
Query: 212 TMSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIF 271
+ C +D + ++ ++ + + D+D E+ + + F
Sbjct: 214 -----LVACGDDPELRELLPRVSR------PVITYGFSEDADFRA-ENIRQDGGGT--HF 259
Query: 272 DFSQETK-----------KHNIQNLVTSAV-VCMQLGLKVEEIKRALLSCGGLTHRLQTI 319
D + + +HN+ N +A+ V ++LG+ E I+ AL + G+ R +
Sbjct: 260 DVLRRGEVLGDFTLPLPGRHNVLN-ALAAIAVALELGIDDEAIREALATFKGVKRRFEEK 318
Query: 320 ARLGHVIFIND 330
+G V+ I+D
Sbjct: 319 GEVGGVVLIDD 329
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 75.9 bits (187), Expect = 2e-14
Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 40/242 (16%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDV----QLGGNIGLPILNLEYFSPN---------- 161
+AVTGTNGK+S L++ +L + G LG + ++ +P+
Sbjct: 115 VAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILAR 174
Query: 162 ------RFYVIECSSYQIELT--PTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTM 213
+E SS+ +E + ++ N++ DHLD H T+++Y K + +
Sbjct: 175 MRAAGADAVAMEASSHGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSK 234
Query: 214 SK---HAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVI 270
A+I +D ++ + ++ + +D+ + L+ +A +V
Sbjct: 235 LPGLGAAVINADDPAAARLLAALP----RGLKVGYSPQNAGADVQARD--LRATAHGQVF 288
Query: 271 -FDFSQET--------KKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIAR 321
+ + N+ NL+ A +LGL + +I RAL + + R++ +
Sbjct: 289 TLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRMERVGP 348
Query: 322 LG 323
Sbjct: 349 TA 350
Score = 56.6 bits (137), Expect = 1e-08
Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 26/258 (10%)
Query: 104 RERRFSSLQSPFIAVTGTNGKSSTVALISHVLRK-NGYDVQLG--GN----IGLPILNLE 156
RFS P +A+TG+NGK++T +I+ +L G D L GN IG+P+ L
Sbjct: 597 WRARFSL---PVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR 653
Query: 157 YFSPNRFYVIEC---SSYQIE-LTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVT 212
+ +R V E +I L P++ ++ N +H + H++E K +I+
Sbjct: 654 LRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIA 713
Query: 213 MSKH---AIICINDHQC---EKIAYDMN---FIGHSISRISSQSLQSDSDLYIDESFLKC 263
A++ +D K+A F + + ++ + D + + +C
Sbjct: 714 ALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVG-EAGGTRC 772
Query: 264 --SATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIAR 321
+ + +HN++N + + + G +++I+ L + R+Q
Sbjct: 773 QVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRL 832
Query: 322 LGHVIFINDSKATNLHSV 339
I+D+ N S+
Sbjct: 833 SCGTRIIDDTYNANPDSM 850
>gnl|CDD|162224 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ.
Length = 417
Score = 75.0 bits (185), Expect = 4e-14
Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 34/272 (12%)
Query: 92 NVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN---- 147
+E + + R + I +TG++GK++T +++ +L GN
Sbjct: 57 TLEALQALASAKRAK----FSGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNE 112
Query: 148 IGLPILNLEYFSPNRFYVIECS-SYQIE---LTPTIDPSIGVLLNISPDHLDRHHTLENY 203
IGLP+ L + + V+E S+ E L P I V+ NI P HL+ +LE
Sbjct: 113 IGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFGSLEGI 172
Query: 204 VNIKKKIVTMSKH---AIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESF 260
K +I+ K A+I +D K A + + Y
Sbjct: 173 AEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAADISY----- 227
Query: 261 LKCSATSEVIFDFSQETKK----------HNIQNLVTSAVVCMQLGLKVEEIKRALLSCG 310
SA F + HN+ N + +A + ++LG+ +EEI L
Sbjct: 228 ---SALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELK 284
Query: 311 GLTHRLQTIARLGHVIFINDSKATNLHSVIHA 342
+ R + + G + I+D+ N S+ A
Sbjct: 285 LVKGRFEIQTKNG-LTLIDDTYNANPDSMRAA 315
>gnl|CDD|162195 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase.
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase (murein tripeptide ligase) is
described by TIGR01081.
Length = 448
Score = 74.3 bits (183), Expect = 6e-14
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 27/232 (11%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYD--VQLGGNIGLPILNLEYFSPNRFYVIECSSYQ- 172
IAV GT+GK++T A+I+ +L++ G D V +GG + N + V E
Sbjct: 102 IAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEAGTN-ARLGSGEYLVAEADESDA 160
Query: 173 --IELTPTIDPSIGVLLNISPDHLDRH-HTLENYVNIKKKIVTMSK---HAIICINDHQC 226
+ L P + ++ NI PDHLD + + E +K + A+IC +D
Sbjct: 161 SFLHLQPN----VAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVL 216
Query: 227 EKIAYDMNFIGHSISRISSQSLQSDSDLY---IDESFLKCSATSEVIFDFSQETK----- 278
++ + I+ D+D I +S + + E
Sbjct: 217 RELVPKA-----TEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPG 271
Query: 279 KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFIND 330
+HN+ N + + V ++LG+ E I RAL + G+ R + + G V+ I+D
Sbjct: 272 RHNVLNALAAIAVALELGIDFEAILRALANFQGVKRRFEILGEFGGVLLIDD 323
>gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase; Provisional.
Length = 822
Score = 54.2 bits (131), Expect = 7e-08
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 38/268 (14%)
Query: 105 ERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKN--------GYDVQLGGNIGLPILNLE 156
S P I +TG+NGK+ + +L + Y+ Q IG+P+ +
Sbjct: 99 AYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQ----IGVPLSVWQ 154
Query: 157 YFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKI-- 210
+ + E Q L I P+IG+L NI H EN+ +IK+KI
Sbjct: 155 LNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAH------QENFRSIKQKIME 208
Query: 211 -VTMSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEV 269
+ + K + I + E I+ + ++ IS ++ LYI F++ V
Sbjct: 209 KLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYI--PFVEKKEDHTV 266
Query: 270 I----FDFSQETK-----KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA 320
I + +I+NL+ V + LG ++I+ + + RL+
Sbjct: 267 ISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQIQERMARLEPVAMRLEVKE 326
Query: 321 RLGHVIFINDSKATNLHSVIHA--FLNE 346
+ + INDS ++L S+ A FLN
Sbjct: 327 GINNCTLINDSYNSDLQSLDIALDFLNR 354
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 53.6 bits (130), Expect = 1e-07
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 38/127 (29%)
Query: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIE---CSS 170
P +AVTGTNGK++T LI+H+L+ +G V + G+ I +I+ C+
Sbjct: 481 PIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDG---------RLIDKGDCTG 531
Query: 171 YQ----IELTPTIDP--------------------SIGVLLNISPDHLDRH--HTLENYV 204
+ + + P ++ +GV+ NI DHL +TLE+
Sbjct: 532 PKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLA 591
Query: 205 NIKKKIV 211
+K+ +V
Sbjct: 592 KVKRVVV 598
>gnl|CDD|184459 PRK14022, PRK14022,
UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase;
Provisional.
Length = 481
Score = 52.7 bits (127), Expect = 2e-07
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 33/216 (15%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPI--------------LNL-----E 156
+A TGT GK++ H+L++ L L+L E
Sbjct: 113 LAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAE 172
Query: 157 YFSPNRFYVI-ECSS--YQIELTPTIDPSIGVLLNISPDHLD--RHHTLENYVNIKKKIV 211
++I E SS Y + + +GV LNI+PDH+ H T E+Y K+ ++
Sbjct: 173 AVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLM 232
Query: 212 TMSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESF-LKCSATSEVI 270
SK ++ + + + + ++ DS+ I S AT ++
Sbjct: 233 ENSKAVVV---NSDMD----HFSELLEQVTPQEHDFYGIDSENQIMASNAFSFEATGKLA 285
Query: 271 FDFS-QETKKHNIQNLVTSAVVCMQLGLKVEEIKRA 305
+ Q K N +N + + + C++LG +E+I++
Sbjct: 286 GTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKG 321
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 52.1 bits (125), Expect = 3e-07
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 32/124 (25%)
Query: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQ- 172
P ++VTGTNGK++T L++H+L++ G V + G+ Y + +
Sbjct: 480 PIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGV------YIGKYLVEKGDNTGPAS 533
Query: 173 ---IELTPTIDPS--------------------IGVLLNISPDHL--DRHHTLENYVNIK 207
I + PT+D + +GV+ NI+ DHL +T+E+ ++K
Sbjct: 534 ARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVK 593
Query: 208 KKIV 211
+ +V
Sbjct: 594 RVVV 597
>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. A mutation study of the FolC gene of E. coli
suggests that both activitities belong to the same
active site. Because some examples are monofunctional
(and these cannot be separated phylogenetically), the
model is treated as subfamily, not equivalog.
Length = 397
Score = 43.0 bits (102), Expect = 2e-04
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDV 142
P I V GTNGK ST A + +LR GY V
Sbjct: 19 PVIHVAGTNGKGSTCAFLESILRAAGYKV 47
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed.
Length = 453
Score = 39.6 bits (93), Expect = 0.002
Identities = 55/254 (21%), Positives = 111/254 (43%), Gaps = 29/254 (11%)
Query: 112 QSP--FIAVTGTNGKSSTVALISHVLRKNGYDVQLGGN----IGLPILNLEYFSPNRFYV 165
Q P +A+TG++GK+S + + +LR+ G + GN IG+P+ L + + V
Sbjct: 97 QVPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLRLTPEHDYAV 156
Query: 166 IEC-SSYQIELTPTID---PSIGVLLNISPDHLDRHHTLENYVNIKKKIVT-MSKHAIIC 220
IE +++Q E+ T+ P ++ N++ HL+ +L K +I + + ++ I
Sbjct: 157 IELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAI 216
Query: 221 INDHQCEKIAYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETK-- 278
+N + + + ++ R S + + D + T +F+ T
Sbjct: 217 MNADSNDWLNWQSVIGSKTVWRFSPNA-ANSVDFTATNIHVTSHGT-----EFTLHTPTG 270
Query: 279 ----------KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVIFI 328
+HNI N + +A + M +G ++ +K L + + RL I + +
Sbjct: 271 SVDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEGQLLL 330
Query: 329 NDSKATNLHSVIHA 342
+DS N+ S+ A
Sbjct: 331 DDSYNANVGSMTAA 344
>gnl|CDD|181980 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like
protein; Reviewed.
Length = 301
Score = 37.8 bits (89), Expect = 0.005
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVID 56
+ + GLGR G + A L G V+ +D +P AV+ + G D
Sbjct: 3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGAD 48
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 37.1 bits (86), Expect = 0.011
Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 34/219 (15%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYD--VQLGGNIGLPILNLE----YFSPNRFYVIECS 169
I V+G++GK++ +LI+ + ++ D +GG LN E Y + ++V E
Sbjct: 107 ILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGG------LNQEGLNGYSGSSEYFVAEAD 160
Query: 170 SYQIELTPTIDPSIGVLLNISPDHLDRHH-TLENYVNIKKKIVTMSKHAIICINDHQCEK 228
L P V+ NI +HL E + + + C + C +
Sbjct: 161 ESDGSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPR 219
Query: 229 IAYDMNFIGHSISRISSQS--LQSDSDLYID-------ESFLKCSATSEVIFDFS-QETK 278
+ + S S DL+I S+ V D
Sbjct: 220 LK----------GCLQGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVG 269
Query: 279 KHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQ 317
HN+ N + + + LG+ I+ AL G+ RL+
Sbjct: 270 MHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRRLE 308
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase.
Length = 510
Score = 36.3 bits (84), Expect = 0.015
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 106 RRFSSLQSPFIAV--TGTNGKSSTVALISHVLRKNGYDV 142
R + S F AV GT GK ST A +S++LR GY V
Sbjct: 66 DRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSV 104
>gnl|CDD|130153 TIGR01081, mpl,
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase. Alternate name: murein
tripeptide ligase.
Length = 448
Score = 36.0 bits (83), Expect = 0.023
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLE---YFSPNRFYVIECSSYQ 172
+AV GT+GK++T ++++ VL + G + G IG N + F+VIE Y
Sbjct: 105 LAVAGTHGKTTTASMLAWVLEQCGL--KPGFLIGGVPGNFGVSARLGESPFFVIEADEYD 162
Query: 173 IELTPTID---------PSIGVLLNISPDHLD 195
T D P VL N+ DH D
Sbjct: 163 ---TAFFDKRSKFVHYRPRTLVLNNLEFDHAD 191
>gnl|CDD|184828 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 35.7 bits (83), Expect = 0.024
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 11 IAVFGLGRSGLSAACALKDSGV--HVIAWDDHPCAVKQAKDMGIEVID 56
+ V GLG G S A AL++ G+ V+A D +++ A +G VID
Sbjct: 6 VVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG--VID 51
>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyses
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino
acids valine and isoleucine.
Length = 165
Score = 35.2 bits (82), Expect = 0.039
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHV-IAWDDHPCAVKQAKDMGIEVIDFRE-IPWS-IISF 67
IAV G G G + A L+DSGV+V + + ++AK G EV E + + ++
Sbjct: 7 IAVIGYGSQGHAHALNLRDSGVNVIVGLRPGSKSWEKAKKDGFEVYTVAEAVKKADVVMI 66
Query: 68 LV 69
L+
Sbjct: 67 LL 68
>gnl|CDD|162080 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase
(decarboxylating). This family resembles a larger
family (gnd) of bacterial and eukaryotic
6-phosphogluconate dehydrogenases but differs from it
by a deep split in a UPGMA similarity clustering tree
and the lack of a central region of about 140 residues.
Among complete genomes, it is found is found in
Bacillus subtilis and Mycobacterium tuberculosis, both
of which also contain gnd, and in Aquifex aeolicus. The
protein from Methylobacillus flagellatus KT has been
characterized as a decarboxylating 6-phosphogluconate
dehydrogenase as part of an unusual formaldehyde
oxidation cycle. In some sequenced organisms members of
this family are the sole 6-phosphogluconate
dehydrogenase present and are probably active in the
pentose phosphate cycle.
Length = 298
Score = 34.4 bits (79), Expect = 0.069
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAK-DMGIEVIDFRE 59
+ + GLGR G + L G + +D AVK K D V + RE
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRE 52
>gnl|CDD|129652 TIGR00561, pntA, NAD(P) transhydrogenase, alpha subunit. In some
species, such as Rhodospirillum rubrum, the alpha chain
is replaced by two shorter chains, both with some
homology to the full-length alpha chain modeled here.
These score below the trusted cutoff.
Length = 511
Score = 34.1 bits (78), Expect = 0.081
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEV--IDFRE 59
+ V G G +GL+A A G V A+D P +Q + MG E +DF+E
Sbjct: 167 VLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 217
>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 33.4 bits (77), Expect = 0.13
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 94 EIIGDIELFVRERRFSSLQSPF-IAVTGTNG--KSSTVALISHVLRKNGYDVQLG 145
E++ +LF S P I G NG K++T+A +++ L+KNG+ V +
Sbjct: 120 EVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA 174
>gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated.
Length = 356
Score = 33.3 bits (76), Expect = 0.14
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 355 GGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLS 399
G ++KS DF + FI + + + + F H G + S
Sbjct: 20 GQVAKSQDFPSAITFIVSMFLTFSLSSF---FAKHLGSFLVSIFK 61
>gnl|CDD|166468 PLN02827, PLN02827, Alcohol dehydrogenase-like.
Length = 378
Score = 33.0 bits (75), Expect = 0.16
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 10 SIAVFGLGRSGLSAACALKDSGV-HVIAWDDHPCAVKQAKDMGI 52
S+ +FGLG GLS A K G +I D +P ++AK G+
Sbjct: 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239
>gnl|CDD|132626 TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated
methylase. Members of this small clade are
methyltransferases of the pfam08241 family and are
observed within operons for the biosynthesis of
pseudaminic acid, a component of exopolysaccharide and
flagellin glycosyl modifications. Notable among these
genomes is Pseudomonas fluorescens PfO-1. Possibly one
of the two hydroxyl groups of pseudaminic acid, at
positions 4 and 8 is converted to a methoxy group by
this enzyme.
Length = 204
Score = 32.9 bits (75), Expect = 0.18
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 26/96 (27%)
Query: 125 SSTVALISHVLRKNGYD---VQLGGNIGLPILNLEYFSPNR-FYVIECSSYQIE----LT 176
++ +A+ + L + ++LG NIG+ + L+ P + Y +E + Y +E
Sbjct: 28 AAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87
Query: 177 PTI--------DP----------SIGVLLNISPDHL 194
P I DP + GVL++I+PD+L
Sbjct: 88 PNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDNL 123
>gnl|CDD|180113 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.
Length = 330
Score = 32.4 bits (75), Expect = 0.25
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 15/60 (25%)
Query: 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVI--------AWDDHPCAVKQAKDMGIEV 54
LS + +A+ G G G + A L+DSGV V+ +W K+A+ G EV
Sbjct: 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW-------KKAEADGFEV 64
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway.
Length = 314
Score = 32.0 bits (73), Expect = 0.34
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 6 FRNHSIAVFGLGRSGLSAACALKDSGVHVI-AWDDHPCAVKQAKDMGIEVIDFRE 59
+ ++A+ G G G + A L+DSG++VI + K+A + G +V E
Sbjct: 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEE 55
>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional.
Length = 335
Score = 32.0 bits (72), Expect = 0.35
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFRE 59
+ + ++AV G G G + A L+DSGV V+ + + AK G EV+ E
Sbjct: 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSE 67
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 31.8 bits (73), Expect = 0.38
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 11 IAVFGLGRSGLSAACALKDSG--VHVIAWDDHPCAVKQAKDMGI--EVIDFREI 60
I + GLG G S ALK+ G V +D + +K+A ++G+ E++ F E+
Sbjct: 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL 56
>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like.
Length = 381
Score = 31.7 bits (72), Expect = 0.44
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 10 SIAVFGLGRSGLSAACALKDSGV-HVIAWDDHPCAVKQAKDMGI 52
S+A+FGLG GL+ A + G +I D +P ++ K+MGI
Sbjct: 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 31.5 bits (71), Expect = 0.46
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 7 RNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP 41
R+ +AV G G +GL A L +GV V +D HP
Sbjct: 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343
>gnl|CDD|180613 PRK06545, PRK06545, prephenate dehydrogenase; Validated.
Length = 359
Score = 31.0 bits (71), Expect = 0.60
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 10 SIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVID 56
++ + GLG G S A A+K +G V P A + A+ +G VID
Sbjct: 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVID 48
>gnl|CDD|163112 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. All of
these enzymes contain three Pfam domains, pfam03721,
pfam00984, and pfam03720 for the N-terminal, central,
and C-terminal regions respectively.
Length = 411
Score = 30.7 bits (70), Expect = 0.77
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWD 38
IAV GLG GL A L D G V D
Sbjct: 3 IAVIGLGYVGLPLAALLADLGHEVTGVD 30
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 30.7 bits (70), Expect = 0.85
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI 60
I V G G +GLS A +L SG+ V + P A D REI
Sbjct: 6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPA-----FDGREI 50
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 30.6 bits (69), Expect = 0.90
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 7 RNHSIAVFGLGRSGLSAACALKDSGVH-VIAWDDHPCAVKQAKDMGIEVI 55
+ + V G G GL+AA A +G V+A D P + A G +
Sbjct: 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL 169
>gnl|CDD|161686 TIGR00064, ftsY, signal recognition particle-docking protein FtsY.
There is a weak division between FtsY and SRP54; both
are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein.
Length = 272
Score = 30.3 bits (69), Expect = 0.99
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 92 NVEIIGDIELFVRERRFSSLQSPF------------IAVTGTNG--KSSTVALISHVLRK 137
V+ ++ ++E L+ I G NG K++T+A +++ L+K
Sbjct: 39 KVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK 98
Query: 138 NGYDVQLG 145
G V L
Sbjct: 99 QGKSVLLA 106
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHP 41
+AV G G +GL+ A L +GV V+ +D HP
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHP 174
>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione
dehydrogenase/class III alcohol dehydrogenase. The
members of this protein family show dual function.
First, they remove formaldehyde, a toxic metabolite, by
acting as S-(hydroxymethyl)glutathione dehydrogenase
(1.1.1.284). S-(hydroxymethyl)glutathione can form
spontaneously from formaldehyde and glutathione, and so
this enzyme previously was designated
glutathione-dependent formaldehyde dehydrogenase. These
same proteins are also designated alcohol dehydrogenase
(EC 1.1.1.1) of class III, for activities that do not
require glutathione; they tend to show poor activity for
ethanol among their various substrate alcohols.
Length = 368
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 10 SIAVFGLGRSGLSAACALKDSGV-HVIAWDDHPCAVKQAKDMG 51
++AVFGLG GLS + + +IA D +P + AK +G
Sbjct: 188 TVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLG 230
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 30.3 bits (69), Expect = 1.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 8 NHSIAVFGLGRSGLSAACALKDSGVHV 34
+ V G G G S A AL SG+ V
Sbjct: 5 KFDVVVVGGGLVGASLALALAQSGLRV 31
>gnl|CDD|178469 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
Length = 530
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGY 140
I V GT GK ST +LR G+
Sbjct: 64 IHVAGTKGKGSTCTFTESILRNCGF 88
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 29.7 bits (67), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 13 VFGLGRSGLSAACALKDSGVHVIAWDDHP 41
V G G +GL+AA A +G VI D+ P
Sbjct: 168 VVGAGPAGLAAALAAARAGARVILVDEQP 196
>gnl|CDD|184384 PRK13904, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 257
Score = 29.5 bits (67), Expect = 1.9
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 256 IDESFLK--CSATSEVIFDFSQETKKHNIQNL--------VTSAVVCMQLGLKVEEIKRA 305
ID L+ + S IF++ KK+N+ +V M GLK EI
Sbjct: 64 IDGECLEIGGATKSGKIFNY---AKKNNLGGFEFLGKLPGTLGGLVKMNAGLKEYEISNN 120
Query: 306 LLS 308
L S
Sbjct: 121 LES 123
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate
reductase, flavoprotein subunit, Bacillus subtilis
subgroup. This model represents the succinate
dehydrogenase flavoprotein subunit as found in the
low-GC Gram-positive bacteria and a few other lineages.
This enzyme may act in a complete or partial TCA cycle,
or act in the opposite direction as fumarate reductase.
In some but not all species, succinate dehydrogenase
and fumarate reductase may be encoded as separate
isozymes.
Length = 603
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQA 47
+ V G G +G AA L + G HV + A ++A
Sbjct: 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD-APRRA 36
>gnl|CDD|179750 PRK04148, PRK04148, hypothetical protein; Provisional.
Length = 134
Score = 29.2 bits (66), Expect = 2.2
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 7 RNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGI 52
+N I G+G A LK+SG VI D + AV++AK +G+
Sbjct: 16 KNKKIVELGIGFY-FKVAKKLKESGFDVIVIDINEKAVEKAKKLGL 60
>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active
dehydrogenase/acetaldehyde-active reductase;
Provisional.
Length = 338
Score = 28.8 bits (65), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 11 IAVFGLGRSG-LSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVI 55
IA++G G G L+ A VIA D + + AK++G ++
Sbjct: 166 IAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLT 211
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 28.6 bits (64), Expect = 3.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHP 41
+A+ G G +GL+ A L +GV V +D HP
Sbjct: 330 VAIIGAGPAGLACADVLARNGVAVTVYDRHP 360
>gnl|CDD|184473 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional.
Length = 467
Score = 28.6 bits (64), Expect = 3.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 198 HTLENYVNIKKKIVTMSKHAIICINDHQ---CEKIAYDM 233
HTLE Y+ +++V M + ICI D K AY++
Sbjct: 150 HTLEYYLEFARELVDMGVDS-ICIKDMAGLLTPKRAYEL 187
>gnl|CDD|163032 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase,
glutathione-independent. Members of this family
represent a distinct clade within the larger family of
zinc-dependent dehydrogenases of medium chain alcohols,
a family that also includes the so-called
glutathione-dependent formaldehyde dehydrogenase.
Members of this protein family have a tightly bound NAD
that can act as a true cofactor, rather than a
cosubstrate in dehydrogenase reactions, in dismutase
reactions for some aldehydes. The name given to this
family, however, is formaldehyde dehydrogenase,
glutathione-independent.
Length = 393
Score = 28.7 bits (64), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 10 SIAVFGLGRSGLSAACALKDSGVH-VIAWDDHPCAVKQAKDMGIEVIDFR 58
++ + G G GL+AA + + G VI D +P + QA+ G E +D
Sbjct: 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLS 237
>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 526
Score = 28.5 bits (65), Expect = 4.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 13 VFGLGRSGLSAACALKDSGVHVIAWDDHP-CAVKQAKDMGIEVIDFREI 60
+ GLGR G A K G+ VIA+D P + ++A +G+E++ E+
Sbjct: 145 IIGLGRIGSEVAKRAKAFGMKVIAYD--PYISPERAAQLGVELVSLDEL 191
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 28.5 bits (64), Expect = 4.0
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 7 RNHSIAVFGLGRSGLSAACALKDSGV--HVI 35
R+ AV G G GL AA ALK+ GV HVI
Sbjct: 144 RSKRGAVVGGGLLGLEAAGALKNLGVETHVI 174
>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 28.4 bits (64), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKD 49
+A+ G G GL+ A ALKDSG+ + + P AK
Sbjct: 21 VAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKG 59
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 28.3 bits (64), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVIAWDDHP 41
+ V G G +GL AA L D+G V+ D
Sbjct: 7 VIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37
>gnl|CDD|180415 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase;
Validated.
Length = 311
Score = 28.2 bits (63), Expect = 4.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 10 SIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDM 50
++A+ G G G A G+ V+ D A+++A+ +
Sbjct: 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGV 46
>gnl|CDD|184717 PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.
Length = 497
Score = 28.2 bits (64), Expect = 4.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 86 KLANQFNVEIIGDIELFV 103
AN +EIIGD+ ++V
Sbjct: 205 AYANDKGIEIIGDLPIYV 222
>gnl|CDD|179106 PRK00742, PRK00742, chemotaxis-specific methylesterase;
Provisional.
Length = 354
Score = 28.2 bits (64), Expect = 5.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 15 GLGRSGLSAACALKDSGVHVIAWDDHPCAV----KQAKDMGI--EVIDFREIPWSIISFL 68
G+GR G + +K +G IA D+ C V K A + G EV+ +I I+ +
Sbjct: 291 GMGRDGAAGLLEMKQAGATTIAQDEASCVVYGMPKAAIEAGAVDEVLPLDQIAERILKEV 350
>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase. This
enzyme belongs to the 3-hydroxyacid dehydrogenase
family, sharing a common evolutionary origin and
enzymatic mechanism with 6-phosphogluconate. HIBADH
exhibits sequence similarity to the NAD binding domain
of 6-phosphogluconate dehydrogenase above trusted
(pfam03446).
Length = 288
Score = 28.2 bits (63), Expect = 5.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 15 GLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVID 56
GLG G A L +G V +D P AV++A G +
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAA 44
>gnl|CDD|162205 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane.
Length = 582
Score = 27.8 bits (62), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 198 HTLENYVNIKKKIVTMSKHAIICIND 223
HTLE Y+++ ++++ M ICI D
Sbjct: 146 HTLETYLDLAEELLEMGVD-SICIKD 170
>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional.
Length = 277
Score = 28.1 bits (63), Expect = 5.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 7 RNHSIAVFGLGRSGLSAACA--LKDSGVHVIAWDDHPCAVKQAKDMGIEVI--DFREIPW 62
SI + G SG+ A CA L+ G V A V + G+E D+ E P
Sbjct: 3 MKRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAE-PE 60
Query: 63 SI 64
SI
Sbjct: 61 SI 62
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 27.7 bits (62), Expect = 5.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 113 SPF-IAVTGTNGKSSTVALISHVLRKNGYDV 142
+PF V GTNGK +T + +L GY V
Sbjct: 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRV 78
>gnl|CDD|130583 TIGR01520, FruBisAldo_II_A, fructose-bisphosphate aldolase, class
II, yeast/E. coli subtype. This model represents one of
two deeply split, architecturally distinct clades of the
family that includes class II fructose-bisphosphate
aldolases, tagatose-bisphosphate aldolases, and related
uncharacterized proteins. This family is well-conserved
and includes characterized FBA from Saccharomyces
cerevisiae, Escherichia coli, and Corynebacterium
glutamicum. Proteins outside the scope of this model may
also be designated as class II fructose-bisphosphate
aldolases, but are well separated in an alignment-based
phylogenetic tree.
Length = 357
Score = 27.9 bits (62), Expect = 5.8
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 394 INSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASF 431
IN T S T++ AL++ DV++ P I+ FS G A+F
Sbjct: 32 INCTSSSTINAALEAA-ADVKS---PIIIQFSNGGAAF 65
>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase;
Validated.
Length = 322
Score = 27.6 bits (62), Expect = 6.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 GLSAACALKDSGVHVI-AWDDHPCAVKQAKDMGI 52
GL AA AL G HVI A + A A+++GI
Sbjct: 19 GLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI 52
>gnl|CDD|130731 TIGR01670, YrbI-phosphatas, 3-deoxy-D-manno-octulosonate
8-phosphate phosphatase, YrbI family. The
Methanosarcina sequence is distinctive in that it is
linked to an N-terminal cytidylyltransferase domain
(pfam02348) and is annotated as acylneuraminate
cytidylyltransferase. This may give some clue as the
function of these phosphatases. Several eukaryotic
sequences scoring between trusted and noise are also
closely related to this function such as the
CMP-N-acetylneuraminic acid synthetase from mouse, but
in these cases the phosphatase domain is clearly
inactive as many of the active site residues are not
conserved.
Length = 154
Score = 27.9 bits (62), Expect = 6.4
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 11 IAVFGLGRSGLSAACALK-DSGVHVIAWDDHPCAVKQAKDMGIEVI 55
I F + R G CALK V +I + K +GI +
Sbjct: 26 IKAFNV-RDGYGIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHL 70
>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 27.5 bits (62), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 115 FIAVTGT--NGKSSTVALISHVLRKNGYDV 142
+ GT +GK++ +S L + GYDV
Sbjct: 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDV 33
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 10 SIAVFGLGRSGLSAACALKDSGVHVI 35
S+ V G G +G++AA AL D+ V
Sbjct: 2 SVIVIGGGIAGIAAARALHDASFKVT 27
>gnl|CDD|148236 pfam06506, PrpR_N, Propionate catabolism activator. This domain is
found at the N terminus of several sigma54- dependent
transcriptional activators including PrpR, which
activates catabolism of propionate.
Length = 169
Score = 27.5 bits (62), Expect = 7.6
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 8 NHSIAVFGLGRS--GLSAACALKDSGVHVIAWDDH---PCAVKQAKDMGIEVI 55
I + G GL A L + A+ AVK+ K GI+VI
Sbjct: 75 GGRIGLVGYENIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKAQGIKVI 127
>gnl|CDD|150950 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 27.3 bits (61), Expect = 7.9
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 196 RHHTLE--NYVNIKKKIVT-MSKHAIICINDHQCEKIAYDMNFIGHSISRISSQSLQSDS 252
R+ L+ ++V+++K V MS A+ I D E++ D S S ++ S+
Sbjct: 280 RNILLKYIHFVSLRKGFVYYMSYKAVKFIEDLIKERLKSDKTSESESGSDKIAEKDSSEK 339
Query: 253 DLYIDESFL 261
+ DE L
Sbjct: 340 EESSDEELL 348
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 27.6 bits (62), Expect = 8.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHVI 35
IAV G G +GL+AA AL +G V
Sbjct: 10 IAVIGGGPAGLAAAIALARAGASVA 34
>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 27.4 bits (61), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 IAVFGLGRSGLSAACALKDSGVHV 34
+A+ G G GL+ A ALK+S + +
Sbjct: 7 VAIIGGGMVGLALAAALKESDLRI 30
>gnl|CDD|161695 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating).
Length = 265
Score = 27.2 bits (61), Expect = 9.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 296 GLKVEEIKRALLSCGGLTHRLQTIARLGHVIFIND 330
GL++ E K A+ GG HRL L + I D
Sbjct: 126 GLRLLE-KYAVRVGGGDNHRL----GLSDAVMIKD 155
>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated.
Length = 332
Score = 27.4 bits (61), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 5 SFRNHSIAVFGLGRSGLSAACAL-KDSGVHVIAWDDHP 41
S ++ +AV G GR GL+ A K G V+A+D P
Sbjct: 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP 180
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,521,332
Number of extensions: 486148
Number of successful extensions: 1341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 121
Length of query: 468
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 371
Effective length of database: 3,898,497
Effective search space: 1446342387
Effective search space used: 1446342387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)