HHsearch alignment for GI: 254781100 and conserved domain: cd06852

>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00  E-value=0  Score=525.94  Aligned_cols=279  Identities=55%  Similarity=0.990  Sum_probs=255.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             31102465788512577877799999987535678989998877899999998744678753135660368899999999
Q gi|254781100|r   62 NLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFII  141 (366)
Q Consensus        62 ~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~  141 (366)
T Consensus         1 ~~~~h~~K~~TP~~GGlai~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~iGl~DD~~~i~~~~~~gl~~~~Kl~~q~~~   80 (280)
T cd06852           1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI   80 (280)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             98311359999870799999999999999998457699999999999999999875888872156788776899999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986402776655666653377512110000000122220235788998598752111166579899999999997
Q gi|254781100|r  142 AILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFI  221 (366)
Q Consensus       142 a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii  221 (366)
T Consensus        81 a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ti~~iv~~~Na~N~iDGlDGLa~g~~~i~~~~l~~i  153 (280)
T cd06852          81 AIVFALLLYYFNGSGTL-------ITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAII  153 (280)
T ss_pred             HHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999974664444-------00465433210379999999999999998888976244206689999999999999


Q ss_pred             HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64147534666641014788346789988867788898885567410016461088799999999999624589999999
Q gi|254781100|r  222 AYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGG  301 (366)
Q Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~  301 (366)
T Consensus       154 ~~~~~~~~--------------~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~LG~~la~~ai~~~~~~~~~~~~~  219 (280)
T cd06852         154 AYLAGNAV--------------FLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGG  219 (280)
T ss_pred             HHHHCCHH--------------HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99816826--------------9999999999999999984188163765785278999999999999766699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999986088766678122899967988515898778999999999998
Q gi|254781100|r  302 LFVVETLSVIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVIGLL  361 (366)
Q Consensus       302 i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~l~~~G~s~~~iv~~~~~i~~~~~~~~i~  361 (366)
T Consensus       220 i~~~~~l~~~i~~~~~r~~~~~~f~~~plHH~l~~~G~s~~~~v~~~~~is~~~~~~~i~  279 (280)
T cd06852         220 VFVIEALSVILQVGSFKLTGKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLL  279 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999288878889739999876987589999999999999999996