HHsearch alignment for GI: 254781100 and conserved domain: cd06852
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=0 Score=525.94 Aligned_cols=279 Identities=55% Similarity=0.990 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 31102465788512577877799999987535678989998877899999998744678753135660368899999999
Q gi|254781100|r 62 NLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFII 141 (366)
Q Consensus 62 ~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~ 141 (366)
T Consensus 1 ~~~~h~~K~~TP~~GGlai~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~iGl~DD~~~i~~~~~~gl~~~~Kl~~q~~~ 80 (280)
T cd06852 1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI 80 (280)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98311359999870799999999999999998457699999999999999999875888872156788776899999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986402776655666653377512110000000122220235788998598752111166579899999999997
Q gi|254781100|r 142 AILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFI 221 (366)
Q Consensus 142 a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii 221 (366)
T Consensus 81 a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ti~~iv~~~Na~N~iDGlDGLa~g~~~i~~~~l~~i 153 (280)
T cd06852 81 AIVFALLLYYFNGSGTL-------ITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAII 153 (280)
T ss_pred HHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999974664444-------00465433210379999999999999998888976244206689999999999999
Q ss_pred HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64147534666641014788346789988867788898885567410016461088799999999999624589999999
Q gi|254781100|r 222 AYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGG 301 (366)
Q Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~ 301 (366)
T Consensus 154 ~~~~~~~~--------------~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~LG~~la~~ai~~~~~~~~~~~~~ 219 (280)
T cd06852 154 AYLAGNAV--------------FLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGG 219 (280)
T ss_pred HHHHCCHH--------------HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99816826--------------9999999999999999984188163765785278999999999999766699999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999986088766678122899967988515898778999999999998
Q gi|254781100|r 302 LFVVETLSVIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVIGLL 361 (366)
Q Consensus 302 i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~l~~~G~s~~~iv~~~~~i~~~~~~~~i~ 361 (366)
T Consensus 220 i~~~~~l~~~i~~~~~r~~~~~~f~~~plHH~l~~~G~s~~~~v~~~~~is~~~~~~~i~ 279 (280)
T cd06852 220 VFVIEALSVILQVGSFKLTGKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLL 279 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999288878889739999876987589999999999999999996