Query         gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 366
No_of_seqs    212 out of 2824
Neff          7.0 
Searched_HMMs 23785
Date          Wed Jun  1 02:00:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781100.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3few_X Colicin S4; cell lysis,  35.7      17 0.00073   14.5   2.7   10  324-333   494-503 (505)
  2 3g63_A Pfluding; subatomic res  16.4      31  0.0013   13.1   0.5   14  320-333   367-380 (381)
  3 3eml_A Human adenosine A2A rec  15.6      44  0.0018   12.3   6.3   14  320-333   471-484 (488)
  4 2j8s_A ACRB, acriflavine resis  12.7      53  0.0022   11.8   6.6   31   16-46    465-495 (1055)
  5 2v50_A Multidrug resistance pr   9.9      67  0.0028   11.3   4.5   32   16-47    465-496 (1052)
  6 3ghy_A Ketopantoate reductase    8.2      79  0.0033   10.9   2.2   29  302-333   307-335 (335)
  7 2i68_A Protein EMRE; transmemb   6.8      92  0.0038   10.5   6.8   36  179-214     3-38  (137)
  8 2qjy_B Cytochrome C1; cytochro   6.8      92  0.0039   10.5   4.2   30  303-332   238-268 (269)
  9 2o1m_A Probable amino-acid ABC   6.7      93  0.0039   10.5   1.8   22  312-333   233-257 (258)
 10 1pj5_A N,N-dimethylglycine oxi   6.5      95   0.004   10.4   1.8   16  323-338   428-443 (830)

No 1  
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=35.72  E-value=17  Score=14.49  Aligned_cols=10  Identities=40%  Similarity=0.557  Sum_probs=4.1

Q ss_pred             CCCCCHHHHH
Q ss_conf             6667812289
Q gi|254781100|r  324 VFLMAPIHHH  333 (366)
Q Consensus       324 ~f~~~plHH~  333 (366)
                      +-+.+|-|||
T Consensus       494 ~~~~~~~~~~  503 (505)
T 3few_X          494 IIKPAHHHHH  503 (505)
T ss_dssp             TSCCCC----
T ss_pred             HCCCCCCCCC
T ss_conf             6243001335


No 2  
>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A 2v3q_A 2cap_A
Probab=16.39  E-value=31  Score=13.12  Aligned_cols=14  Identities=29%  Similarity=0.418  Sum_probs=10.1

Q ss_pred             CCCCCCCCCHHHHH
Q ss_conf             08876667812289
Q gi|254781100|r  320 TKKRVFLMAPIHHH  333 (366)
Q Consensus       320 ~~kr~f~~~plHH~  333 (366)
                      .||.+++.+|-|||
T Consensus       367 ~g~~~~~~~~~~~~  380 (381)
T 3g63_A          367 IGRPLLEAAHHHHH  380 (381)
T ss_dssp             CSBCCC--------
T ss_pred             CCCCHHHHHCCCCC
T ss_conf             88305543113357


No 3  
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens}
Probab=15.55  E-value=44  Score=12.26  Aligned_cols=14  Identities=29%  Similarity=0.465  Sum_probs=7.9

Q ss_pred             CCCCCCCCCHHHHH
Q ss_conf             08876667812289
Q gi|254781100|r  320 TKKRVFLMAPIHHH  333 (366)
Q Consensus       320 ~~kr~f~~~plHH~  333 (366)
                      ++|+|||..|-|||
T Consensus       471 rr~~p~~~~~~~~~  484 (488)
T 3eml_A          471 RQQEPFKAHHHHHH  484 (488)
T ss_dssp             CC------------
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             78999764433423


No 4  
>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ...
Probab=12.68  E-value=53  Score=11.79  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6699999999999999999999998899999
Q gi|254781100|r   16 HVLKYVTFRSSAAFFSAMLIVFAFGPKVIDC   46 (366)
Q Consensus        16 ~~f~~~~fr~~~a~l~sf~i~~~~~~~~I~~   46 (366)
                      ..|+.+.+-...+.+.|++.++.+.|..-.+
T Consensus       465 ~~~~~~~~~v~~aL~~Sl~val~ilP~l~~~  495 (1055)
T 2j8s_A          465 AIYRQFSITIVSAMALSVLVALILTPALCAT  495 (1055)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHTT
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3221304899999999999988658999999


No 5  
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=9.88  E-value=67  Score=11.25  Aligned_cols=32  Identities=6%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66999999999999999999999988999999
Q gi|254781100|r   16 HVLKYVTFRSSAAFFSAMLIVFAFGPKVIDCL   47 (366)
Q Consensus        16 ~~f~~~~fr~~~a~l~sf~i~~~~~~~~I~~l   47 (366)
                      ..|+.+.+-...+.+.|+++++.+.|....++
T Consensus       465 ~~~~~~~~~~~~~l~~s~~~~~~~~p~l~~~~  496 (1052)
T 2v50_A          465 VIYRQFSITIVSAMALSVIVALILTPALCATM  496 (1052)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             41565302588888999999999999999996


No 6  
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2}
Probab=8.17  E-value=79  Score=10.86  Aligned_cols=29  Identities=17%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             99999999999999998608876667812289
Q gi|254781100|r  302 LFVVETLSVIMQVGYFKMTKKRVFLMAPIHHH  333 (366)
Q Consensus       302 i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~  333 (366)
                      .|..|++..+++..   -+.|.+|+-.|-|||
T Consensus       307 ~P~~~~l~~lik~~---~~~~g~~~~~~~~~~  335 (335)
T 3ghy_A          307 TPQIDTLLGLVRLH---AQTRGLYEGHHHHHH  335 (335)
T ss_dssp             CHHHHHHHHHHHHH---HHHTTCC--------
T ss_pred             CHHHHHHHHHHHHH---HHHCCCCCCCCCCCC
T ss_conf             23999999999999---997399788777789


No 7  
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.83  E-value=92  Score=10.49  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=18.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             012222023578899859875211116657989999
Q gi|254781100|r  179 GLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIA  214 (366)
Q Consensus       179 g~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~  214 (366)
                      +|++...++..=+..+.+.+..||..-+......++
T Consensus         3 ~wl~L~~Ai~~EV~gt~~LK~s~gft~~~p~i~~i~   38 (137)
T 2i68_A            3 PYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTII   38 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHC------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             789999999999999999998718874889999999


No 8  
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=6.78  E-value=92  Score=10.48  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHH-HHHHHCCCCCCCCCHHHH
Q ss_conf             999999999999-999860887666781228
Q gi|254781100|r  303 FVVETLSVIMQV-GYFKMTKKRVFLMAPIHH  332 (366)
Q Consensus       303 ~i~~~~sviiq~-~~~k~~~kr~f~~~plHH  332 (366)
                      .++-.++..+.| .|..+.+||+--..|-||
T Consensus       238 ~vl~~l~y~lkr~~WkdIK~~~~~~~~~~~~  268 (269)
T 2qjy_B          238 TVLSVLLYLTNKRLWAGVKGKKKTNVHHHHH  268 (269)
T ss_dssp             HHHHHHHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf             9999999999999857602240001101356


No 9  
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=6.69  E-value=93  Score=10.45  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCCCCCC---CCHHHHH
Q ss_conf             999999860887666---7812289
Q gi|254781100|r  312 MQVGYFKMTKKRVFL---MAPIHHH  333 (366)
Q Consensus       312 iq~~~~k~~~kr~f~---~~plHH~  333 (366)
                      +++++.|+.|+.+-|   +.|-|||
T Consensus       233 ~~~I~~Kw~g~d~~~~~~~~~~~~~  257 (258)
T 2o1m_A          233 LKRLSLKWLGDDYSKEQYLEHHHHH  257 (258)
T ss_dssp             HHHHHHHHTCTTC------------
T ss_pred             HHHHHHHHCCCCCCHHHHHCCCCCC
T ss_conf             9999998779988821301011347


No 10 
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=6.51  E-value=95  Score=10.40  Aligned_cols=16  Identities=25%  Similarity=0.546  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHCC
Q ss_conf             7666781228999679
Q gi|254781100|r  323 RVFLMAPIHHHFEKKG  338 (366)
Q Consensus       323 r~f~~~plHH~l~~~G  338 (366)
                      |+.|++|+|.++...|
T Consensus       428 r~~r~spl~~~~~~~g  443 (830)
T 1pj5_A          428 RNLRVSPFHARHKELG  443 (830)
T ss_dssp             CCSBCCTTHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHCC
T ss_conf             8864460469999719


Done!