Query gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 366
No_of_seqs 212 out of 2824
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 11:46:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781100.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cbia2 c.1.8.10 (A:179-495) H 10.7 19 0.0014 13.0 -0.7 16 259-274 214-234 (317)
2 d2choa2 c.1.8.10 (A:127-436) G 10.4 19 0.0014 12.9 -0.7 16 259-274 209-229 (310)
3 d1ueka1 d.14.1.5 (A:1-148) 4-( 4.7 68 0.0049 9.9 -0.3 18 60-78 74-91 (148)
4 d1x6aa2 g.39.1.3 (A:42-75) Lim 4.7 41 0.003 11.1 -1.4 11 268-278 7-17 (34)
5 d1kf6d_ f.21.2.2 (D:) Fumarate 4.2 86 0.0063 9.3 4.6 33 330-362 83-115 (119)
6 d1o5ha_ a.191.1.1 (A:) Hypothe 4.2 87 0.0063 9.3 3.1 23 68-90 16-38 (200)
7 d1oedc_ f.36.1.1 (C:) Acetylch 4.2 89 0.0064 9.3 1.6 16 76-91 35-50 (260)
8 d1gm5a3 c.37.1.19 (A:286-549) 3.8 99 0.0072 9.0 0.3 14 263-276 102-115 (264)
9 d1oj4a1 d.14.1.5 (A:1-163) 4-( 3.6 1.1E+02 0.0078 8.8 2.4 36 42-78 69-104 (163)
10 d2axth1 f.23.33.1 (H:2-65) Pho 3.2 1.2E+02 0.0088 8.5 1.5 19 72-90 27-45 (64)
No 1
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=10.72 E-value=19 Score=12.99 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=13.5
Q ss_pred HHHHCCC-----CCCCCCCCC
Q ss_conf 8885567-----410016461
Q gi|254781100|r 259 FLWFNIS-----PAVIFMGDT 274 (366)
Q Consensus 259 FL~fN~~-----PAkIFmGD~ 274 (366)
++|.|+| |.|+|||.-
T Consensus 214 ~iWDNypvNDy~~~rL~lGp~ 234 (317)
T d2cbia2 214 AVWWNYPVTDYFKGKLALGPM 234 (317)
T ss_dssp EEEECCSCCTTSTTSCCCCCC
T ss_pred EEEECCCCCCCCCCCEEECCC
T ss_conf 379692226788786666675
No 2
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=10.41 E-value=19 Score=12.89 Aligned_cols=16 Identities=19% Similarity=0.858 Sum_probs=13.6
Q ss_pred HHHHCCC-----CCCCCCCCC
Q ss_conf 8885567-----410016461
Q gi|254781100|r 259 FLWFNIS-----PAVIFMGDT 274 (366)
Q Consensus 259 FL~fN~~-----PAkIFmGD~ 274 (366)
++|.|+| |.|+|||+-
T Consensus 209 ~iWDNypvNDy~~~rL~lGp~ 229 (310)
T d2choa2 209 YIWWNFPVSDYVRDHLLLGPV 229 (310)
T ss_dssp EEEECCSCCTTSTTCCCCSCC
T ss_pred EEEECCCCCCCCCCCEEECCC
T ss_conf 599763226777686676664
No 3
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=4.69 E-value=68 Score=9.89 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCCHHHH
Q ss_conf 8731102465788512577
Q gi|254781100|r 60 VPNLPIHARKIDTPTMGGI 78 (366)
Q Consensus 60 ~~~~~~H~~K~~tP~~GGi 78 (366)
+.+-+.|.+| .+|..+|+
T Consensus 74 ~~~~~I~i~K-~IP~~aGL 91 (148)
T d1ueka1 74 PGGVRILLEK-RIPEGAGL 91 (148)
T ss_dssp CCEEEEEEEC-CSCSSSSS
T ss_pred CCEEEEEEEE-EEEEEEEC
T ss_conf 7518999982-37886311
No 4
>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=41 Score=11.13 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=5.9
Q ss_pred CCCCCCCCHHH
Q ss_conf 00164610887
Q gi|254781100|r 268 VIFMGDTGSLA 278 (366)
Q Consensus 268 kIFmGD~GS~~ 278 (366)
|+|.||.-|++
T Consensus 7 ~~fIgdgdsya 17 (34)
T d1x6aa2 7 KVIIEDGDAYA 17 (34)
T ss_dssp CCBCCTTSCEE
T ss_pred CCEEECCCEEE
T ss_conf 35870685577
No 5
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=86 Score=9.31 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 228999679885158987789999999999986
Q gi|254781100|r 330 IHHHFEKKGWTENQIVIRFWIISFIFAVIGLLT 362 (366)
Q Consensus 330 lHH~l~~~G~s~~~iv~~~~~i~~~~~~~~i~~ 362 (366)
+||-+.|.+..-..--+.+|..+.+.+++++..
T Consensus 83 ihHglHDlkih~p~g~~~fYg~A~l~sv~~~~~ 115 (119)
T d1kf6d_ 83 MHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIG 115 (119)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999886630003630478899999999999999
No 6
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=4.22 E-value=87 Score=9.30 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 65788512577877799999987
Q gi|254781100|r 68 RKIDTPTMGGIIILMGLIGSSLL 90 (366)
Q Consensus 68 ~K~~tP~~GGiai~~~~l~~~ll 90 (366)
.+.|||-+|.++-+.+-+.+.+.
T Consensus 16 s~~ptPGGGsaaAl~galg~aL~ 38 (200)
T d1o5ha_ 16 ERKPTPGGGAVGSVVGAMACALA 38 (200)
T ss_dssp SSSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999985899999999999999
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.16 E-value=89 Score=9.25 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5778777999999875
Q gi|254781100|r 76 GGIIILMGLIGSSLLW 91 (366)
Q Consensus 76 GGiai~~~~l~~~ll~ 91 (366)
=|+.++++..+-.+..
T Consensus 35 l~it~lLs~~vf~~~v 50 (260)
T d1oedc_ 35 TAISVLLAQAVFLLLT 50 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHH
T ss_conf 5189999999999999
No 8
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.78 E-value=99 Score=8.97 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCH
Q ss_conf 56741001646108
Q gi|254781100|r 263 NISPAVIFMGDTGS 276 (366)
Q Consensus 263 N~~PAkIFmGD~GS 276 (366)
+.+-.+.-.||+||
T Consensus 102 ~~~m~rLL~GdvGS 115 (264)
T d1gm5a3 102 EKPMNRLLQGDVGS 115 (264)
T ss_dssp SSCCCCEEECCSSS
T ss_pred CCCCEEEEECCCCC
T ss_conf 67531566635355
No 9
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=1.1e+02 Score=8.80 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999999862206985388731102465788512577
Q gi|254781100|r 42 KVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGI 78 (366)
Q Consensus 42 ~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGi 78 (366)
.....+++.....+......+-+.|.+|. +|..+|+
T Consensus 69 k~~~~l~~~~~~~~~~~~~~~~~I~i~Kn-IP~gaGL 104 (163)
T d1oj4a1 69 RAARLLMKTAADSGRLPTGSGANISIDKR-LPMGGGL 104 (163)
T ss_dssp HHHHHHHHHHHHTTCSCTTCEEEEEEECC-SCSSTTS
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEE-EEECCCC
T ss_conf 88888998854444235577649999852-5651035
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.21 E-value=1.2e+02 Score=8.49 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8512577877799999987
Q gi|254781100|r 72 TPTMGGIIILMGLIGSSLL 90 (366)
Q Consensus 72 tP~~GGiai~~~~l~~~ll 90 (366)
||.||......++....++
T Consensus 27 TplMgv~m~Lf~vfl~iiL 45 (64)
T d2axth1 27 TPLMAVFMGLFLVFLLIIL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 5799999999999999999
Done!