RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781100|ref|YP_003065513.1|
phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus
Liberibacter asiaticus str. psy62]
         (366 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 64/363 (17%), Positives = 101/363 (27%), Gaps = 169/363 (46%)

Query: 3   IQLADFSEYYIITHVLKYVT---FRSS-------------AA----------FF----SA 32
           IQLA    Y +   +L   T    RS              A           FF     A
Sbjct: 244 IQLA---HYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299

Query: 33  MLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLP--IHARKID----TPT-MGGIIILMGLI 85
           + ++F  G      +R  + +   P    +LP  I    ++     P+ M          
Sbjct: 300 ITVLFFIG------VRCYEAY---PNT--SLPPSILEDSLENNEGVPSPM---------- 338

Query: 86  GSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGL--SGKVRI-LI----E 138
                      L +S +    +         DY+  T      L    +V I L+     
Sbjct: 339 -----------LSISNLTQEQV--------QDYVNKTNSH---LPAGKQVEISLVNGAKN 376

Query: 139 FIIA--ILAVCALLFYSNSTLLGI--------------ETKTSIV--F-----PFF---- 171
            +++    ++  L    N TL                 E K      F     PF     
Sbjct: 377 LVVSGPPQSLYGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432

Query: 172 ---RDIIL-DMGLFFIPFAA----FVIVATANAVNLTDGLDGLAIVP---VMIAS--V-- 216
               D+I  D+    + F A      +  T +  +L   L G +I       I    V  
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-LSG-SISERIVDCIIRLPVKW 490

Query: 217 --AFSFIAYVAGNILLSHYLQVNFVPG----VGELV----------VVISALIGAG---- 256
                F A        +H L  +F PG    +G L           V+++  +       
Sbjct: 491 ETTTQFKA--------THIL--DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540

Query: 257 IGF 259
            GF
Sbjct: 541 YGF 543


>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
           tetrad, hepes, NADP, bIle acid catabolism, cytoplasm,
           disease mutation; HET: NAP EPE; 1.35A {Homo sapiens}
           PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
           3cot_A* 3dop_A* 3cmf_A*
          Length = 326

 Score = 27.6 bits (60), Expect = 4.1
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 315 GYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVI 358
            +  ++   +   A ++   ++   T  QIV+R + I     VI
Sbjct: 229 IWVNVSSPPLLKDALLNSLGKRYNKTAAQIVLR-FNIQRGVVVI 271


>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
           structural genomics, NPPSFA; 2.52A {Thermus thermophilus
           HB8}
          Length = 524

 Score = 27.4 bits (59), Expect = 5.7
 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 13/105 (12%)

Query: 200 TDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPG-----VGE--LVVVISAL 252
           T G  G ++      +   + IA     +  S               + E      +S  
Sbjct: 28  TSGHRGSSLKATFTEAHVLA-IAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVF 86

Query: 253 IGAGIGFLWFNI-----SPAVIFMGDTGSLALGAFIGGIAVSTKH 292
              GI            +P V       +    A   G+ ++  H
Sbjct: 87  AAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSH 131


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.332    0.148    0.439 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,180,827
Number of extensions: 149694
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 34
Length of query: 366
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 272
Effective length of database: 3,414,294
Effective search space: 928687968
Effective search space used: 928687968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.1 bits)