RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62] (366 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 5e-04 Identities = 64/363 (17%), Positives = 101/363 (27%), Gaps = 169/363 (46%) Query: 3 IQLADFSEYYIITHVLKYVT---FRSS-------------AA----------FF----SA 32 IQLA Y + +L T RS A FF A Sbjct: 244 IQLA---HYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299 Query: 33 MLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLP--IHARKID----TPT-MGGIIILMGLI 85 + ++F G +R + + P +LP I ++ P+ M Sbjct: 300 ITVLFFIG------VRCYEAY---PNT--SLPPSILEDSLENNEGVPSPM---------- 338 Query: 86 GSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGL--SGKVRI-LI----E 138 L +S + + DY+ T L +V I L+ Sbjct: 339 -----------LSISNLTQEQV--------QDYVNKTNSH---LPAGKQVEISLVNGAKN 376 Query: 139 FIIA--ILAVCALLFYSNSTLLGI--------------ETKTSIV--F-----PFF---- 171 +++ ++ L N TL E K F PF Sbjct: 377 LVVSGPPQSLYGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432 Query: 172 ---RDIIL-DMGLFFIPFAA----FVIVATANAVNLTDGLDGLAIVP---VMIAS--V-- 216 D+I D+ + F A + T + +L L G +I I V Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-LSG-SISERIVDCIIRLPVKW 490 Query: 217 --AFSFIAYVAGNILLSHYLQVNFVPG----VGELV----------VVISALIGAG---- 256 F A +H L +F PG +G L V+++ + Sbjct: 491 ETTTQFKA--------THIL--DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540 Query: 257 IGF 259 GF Sbjct: 541 YGF 543 >3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle acid catabolism, cytoplasm, disease mutation; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* Length = 326 Score = 27.6 bits (60), Expect = 4.1 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 315 GYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVI 358 + ++ + A ++ ++ T QIV+R + I VI Sbjct: 229 IWVNVSSPPLLKDALLNSLGKRYNKTAAQIVLR-FNIQRGVVVI 271 >2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics, NPPSFA; 2.52A {Thermus thermophilus HB8} Length = 524 Score = 27.4 bits (59), Expect = 5.7 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 13/105 (12%) Query: 200 TDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPG-----VGE--LVVVISAL 252 T G G ++ + + IA + S + E +S Sbjct: 28 TSGHRGSSLKATFTEAHVLA-IAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVF 86 Query: 253 IGAGIGFLWFNI-----SPAVIFMGDTGSLALGAFIGGIAVSTKH 292 GI +P V + A G+ ++ H Sbjct: 87 AAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSH 131 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.332 0.148 0.439 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,180,827 Number of extensions: 149694 Number of successful extensions: 504 Number of sequences better than 10.0: 1 Number of HSP's gapped: 501 Number of HSP's successfully gapped: 34 Length of query: 366 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 272 Effective length of database: 3,414,294 Effective search space: 928687968 Effective search space used: 928687968 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 57 (26.1 bits)