RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62] (366 letters) >d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Score = 30.8 bits (69), Expect = 0.20 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 21/207 (10%) Query: 166 IVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFI---- 221 +V F D+++ + L + + +T ++ I+ ++IA+ Sbjct: 52 LVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERN 111 Query: 222 ---AYVAGNILLSHYLQVNFVP------GVGELVVVISALIGAGIGFLWFNISPAVIFMG 272 A A + + P GE + + +LI + + + G Sbjct: 112 AENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGG 171 Query: 273 DTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFL-MAPIH 331 A+ F +A+ + I GL V ++ + +G +M KK + P Sbjct: 172 SWIRGAIYYFKIAVAL-----AVAAIPEGLPAV--ITTCLALGTRRMAKKNAIVRSLPSV 224 Query: 332 HHFEKKGWTENQIVIRFWIISFIFAVI 358 + + + IR+ I S + V+ Sbjct: 225 ETLGRAIYNNMKQFIRYLISSNVGEVV 251 >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 Score = 27.5 bits (60), Expect = 1.6 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 30 FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80 F+ + FG KV+ +L P ++P+ P GG ++ Sbjct: 243 FAEAAEMATFGAKVLH-PATLL-----PAVRSDIPVFVGSSKDPRAGGTLV 287 >d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} Length = 262 Score = 26.1 bits (56), Expect = 5.0 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 310 VIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVI 358 I G K +F P+ G T Q V+R W + F V Sbjct: 182 KIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLR-WHLQKGFVVF 229 >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 Score = 25.6 bits (55), Expect = 6.0 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 30 FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80 F + FG +V+ +S++ P R +P+ + P G II Sbjct: 253 FDEAAELAYFGAQVLH-PQSMR-----PAREGEIPVRVKNSYNPKAPGTII 297 >d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Score = 25.6 bits (56), Expect = 7.2 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145 I +T+ D GGL+ + L +FI A Sbjct: 72 ITLTSHDCGGLTKRDVKLAQFIEKAAA 98 >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 Score = 25.6 bits (55), Expect = 7.4 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 30 FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80 + + + FG KV+ R+++ P +PI + P G +I Sbjct: 253 YIEAMELAYFGAKVLH-PRTIE-----PAMEKGIPILVKNTFEPESEGTLI 297 >d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99 Score = 25.3 bits (55), Expect = 9.6 Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145 I ++T + GLS + L FI + Sbjct: 70 ITLSTHECAGLSERDINLASFIEQVAV 96 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.332 0.148 0.439 Gapped Lambda K H 0.267 0.0720 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,381,170 Number of extensions: 65385 Number of successful extensions: 178 Number of sequences better than 10.0: 1 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 21 Length of query: 366 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 279 Effective length of database: 1,213,086 Effective search space: 338450994 Effective search space used: 338450994 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 53 (24.2 bits)