RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781100|ref|YP_003065513.1|
phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus
Liberibacter asiaticus str. psy62]
         (366 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 30.8 bits (69), Expect = 0.20
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 21/207 (10%)

Query: 166 IVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFI---- 221
           +V   F D+++ + L     +  +         +T  ++   I+ ++IA+          
Sbjct: 52  LVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERN 111

Query: 222 ---AYVAGNILLSHYLQVNFVP------GVGELVVVISALIGAGIGFLWFNISPAVIFMG 272
              A  A         + +  P        GE +  + +LI   +  +        +  G
Sbjct: 112 AENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGG 171

Query: 273 DTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFL-MAPIH 331
                A+  F   +A+      +  I  GL  V  ++  + +G  +M KK   +   P  
Sbjct: 172 SWIRGAIYYFKIAVAL-----AVAAIPEGLPAV--ITTCLALGTRRMAKKNAIVRSLPSV 224

Query: 332 HHFEKKGWTENQIVIRFWIISFIFAVI 358
               +  +   +  IR+ I S +  V+
Sbjct: 225 ETLGRAIYNNMKQFIRYLISSNVGEVV 251


>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
           562]}
          Length = 292

 Score = 27.5 bits (60), Expect = 1.6
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 30  FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80
           F+    +  FG KV+    +L      P    ++P+       P  GG ++
Sbjct: 243 FAEAAEMATFGAKVLH-PATLL-----PAVRSDIPVFVGSSKDPRAGGTLV 287


>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
           {Corynebacterium sp. [TaxId: 1720]}
          Length = 262

 Score = 26.1 bits (56), Expect = 5.0
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 310 VIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVI 358
            I   G     K  +F   P+       G T  Q V+R W +   F V 
Sbjct: 182 KIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLR-WHLQKGFVVF 229


>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 304

 Score = 25.6 bits (55), Expect = 6.0
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 30  FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80
           F     +  FG +V+   +S++     P R   +P+  +    P   G II
Sbjct: 253 FDEAAELAYFGAQVLH-PQSMR-----PAREGEIPVRVKNSYNPKAPGTII 297


>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 100

 Score = 25.6 bits (56), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145
           I +T+ D GGL+ +   L +FI    A
Sbjct: 72  ITLTSHDCGGLTKRDVKLAQFIEKAAA 98


>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii
           [TaxId: 2190]}
          Length = 302

 Score = 25.6 bits (55), Expect = 7.4
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 30  FSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIII 80
           +   + +  FG KV+   R+++     P     +PI  +    P   G +I
Sbjct: 253 YIEAMELAYFGAKVLH-PRTIE-----PAMEKGIPILVKNTFEPESEGTLI 297


>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase
           (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 99

 Score = 25.3 bits (55), Expect = 9.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145
           I ++T +  GLS +   L  FI  +  
Sbjct: 70  ITLSTHECAGLSERDINLASFIEQVAV 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.148    0.439 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,381,170
Number of extensions: 65385
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 21
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)