HHsearch alignment for GI: 254781101 and conserved domain: COG0769
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=424.84 Aligned_cols=408 Identities=24% Similarity=0.292 Sum_probs=316.7
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC-
Q ss_conf 4677402223789888971688747688899999869889998552124554469728995998999999999998306-
Q gi|254781101|r 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106 (472)
Q Consensus 28 ~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~- 106 (472)
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps 88 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPS 88 (475)
T ss_pred CCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEEECCCC--CCCCCCCCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 57622365637684799973235245344065762897799970555--5545678779986853777888998523865
Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCC--CC--------CC--H---HCC--CCCCCHHHHHCCC
Q ss_conf -99399983036542012334677775201122212211014--57--------41--0---001--2322144430156
Q gi|254781101|r 107 -KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GV--------PL--T---LAR--MPVDVDFGIFELG 168 (472)
Q Consensus 107 -~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~i--Gv--------pl--t---ll~--~~~~~~~~V~E~g 168 (472)
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 78518986387857999999999988629825899977663268863456678921789999999999738809998850
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 64433211212232322025553121012344457888865433103762210121013424689987520123333322
Q gi|254781101|r 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 (472)
Q Consensus 169 ~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~ 248 (472)
T Consensus 169 -sh~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~-~~~ 245 (475)
T COG0769 169 -SHGLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALG-DYI 245 (475)
T ss_pred -HHHHHHCCCC-CCEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCC-CEE
T ss_conf -3479757865-6359886456656666523574999998898776405788747987788038889999985688-789
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 2222222222234-421134651001245654322122222222333322103567651012103455431147664433
Q gi|254781101|r 249 SFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 (472)
Q Consensus 249 ~~g~~~~ad~~~~-~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~ 327 (472)
T Consensus 246 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~GRm 325 (475)
T COG0769 246 TYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPVPGRM 325 (475)
T ss_pred EECCCCCCCCHHHCCCEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 96889963121222611421354058863787326860412277899999999999874999999999997468999860
Q ss_pred CCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10100036531133100025653210125777874111026871388512354171058999999999986499899998
Q gi|254781101|r 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 (472)
Q Consensus 328 ~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~ 407 (472)
T Consensus 326 E~v~~~---~~~v~VD--yAHnPd~le~~L~~~~~~---~~g~li~VfG~----gGDrD~~kr~~mg~ia~~~ad~vivt 393 (475)
T COG0769 326 ELVNIG---GKLVIVD--YAHNPDGLEKALRAVRLH---AAGRLIVVFGC----GGDRDKSKRPDMGAIAEQLADIVIVT 393 (475)
T ss_pred EEECCC---CCEEEEE--ECCCHHHHHHHHHHHHHH---CCCCEEEEECC----CCCCCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 687389---9769999--534869999999998753---49848999776----68875343031599998559936991
Q ss_pred C-----CCHHHHHHHC----CCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8-----0389899851----1379799978989999999984478989999771
Q gi|254781101|r 408 G-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472)
Q Consensus 408 G-----~~~~~~~~~~----~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472)
T Consensus 394 ~dnpR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagk 447 (475)
T COG0769 394 SDNPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGK 447 (475)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 899887688999999983647664143011099999999986324887899642