HHsearch alignment for GI: 254781101 and conserved domain: COG1072

Probab=90.16  E-value=0.15  Score=29.46  Aligned_cols=75  Identities=25%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             HHCCCEEEEECCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHH-----------------CCCCCEEEEECCC--CCC
Q ss_conf             9869889998552124-5544697289959989999999999983-----------------0699399983036--542
Q gi|254781101|r   61 VQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARL-----------------RSKATIIAITGSV--GKT  120 (472)
Q Consensus        61 ~~~Ga~~~i~~~~~~~-~~~~~~~~~i~v~d~~~al~~la~~~~~-----------------~~~~~vI~ITGTn--GKT  120 (472)
T Consensus        17 ~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKS   96 (283)
T COG1072          17 LRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKS   96 (283)
T ss_pred             HHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHH
T ss_conf             54058642678999886067889779999999999999999999889988999999834668888879996057665577


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             012334677775201
Q gi|254781101|r  121 TTKEMLTIALSSIKK  135 (472)
Q Consensus       121 Tt~~~l~~iL~~~~~  135 (472)
T Consensus        97 T~ar~L~~ll~~~~~  111 (283)
T COG1072          97 TTARILQALLSRWPE  111 (283)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             899999999963889