HHsearch alignment for GI: 254781101 and conserved domain: PRK00683

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=338.16  Aligned_cols=301  Identities=18%  Similarity=0.200  Sum_probs=225.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r  106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH  185 (472)
Q Consensus       106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~  185 (472)
T Consensus       100 ~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~~~~VlElSSfQL---~~-~~~~~p~  169 (418)
T PRK00683        100 QRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGN----IGLPI--LDGMQQPGVRVVEISSFQL---AD-QEESIPV  169 (418)
T ss_pred             CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEEC----CCHHH--HHHHCCCCCEEEEEEHHHH---HH-HHHCCCC
T ss_conf             4798799976898660999999999867998188803----46577--7643258946998312423---21-2430776


Q ss_pred             E--EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0--25553121012344457888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r  186 I--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW  263 (472)
Q Consensus       186 i--aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i  263 (472)
T Consensus       170 ~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~------  229 (418)
T PRK00683        170 LSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV--------------QEIM------  229 (418)
T ss_pred             CCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH--------------HHHH------
T ss_conf             22121015784241221689999999999998467976468525411017888877--------------7777------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf             113465100124565432212222222233332210356765-1012103455431147664433101000365311331
Q gi|254781101|r  264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI  342 (472)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~-lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI  342 (472)
T Consensus       230 ~~~~~-------------~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v---~~~~Gv~fi  293 (418)
T PRK00683        230 RLLDK-------------GSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYL---GEKDGVHYI  293 (418)
T ss_pred             HHHCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCCEEE
T ss_conf             77445-------------31016544032988999999999857999999999997348841113688---881782376


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
Q ss_conf             00025653210125777874111026871388512354171058999999999986499899998803898998511379
Q gi|254781101|r  343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI  422 (472)
Q Consensus       343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~  422 (472)
T Consensus       294 NDSKaTN~~a~~~AL~s~~~-------~iilI~GG-----~~K~~d~~~L~~~~~~~-vk~v~~~G~~~~~i~~~l~~~~  360 (418)
T PRK00683        294 NDSKATTVSAVEKALLAVGK-------DVIVILGG-----RNKGGDFPSLLPVLRQT-AKHVVAMGECRQEIAQALSEKF  360 (418)
T ss_pred             CCCCCCCHHHHHHHHHHCCC-------CCEEEECC-----CCCCCCHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCC
T ss_conf             37767898999999985678-------85899757-----87667869999998631-8499996889999999875699


Q ss_pred             CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf             7999789899999999844789899997---71---------3254899999999
Q gi|254781101|r  423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL  465 (472)
Q Consensus       423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~  465 (472)
T Consensus       361 ~~~~~~~l~eAv~~a~~~a~~gd~VLLSPacaSfD~F~nyeeRG~~Fk~lV~~l~  415 (418)
T PRK00683        361 PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAYFKQLVGEME  415 (418)
T ss_pred             CEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8798598999999999847898989989755010021599999999999999732