HHsearch alignment for GI: 254781101 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=338.16 Aligned_cols=301 Identities=18% Similarity=0.200 Sum_probs=225.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
T Consensus 100 ~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~~~~VlElSSfQL---~~-~~~~~p~ 169 (418)
T PRK00683 100 QRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGN----IGLPI--LDGMQQPGVRVVEISSFQL---AD-QEESIPV 169 (418)
T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEEC----CCHHH--HHHHCCCCCEEEEEEHHHH---HH-HHHCCCC
T ss_conf 4798799976898660999999999867998188803----46577--7643258946998312423---21-2430776
Q ss_pred E--EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0--25553121012344457888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 186 I--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 186 i--aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
T Consensus 170 ~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~------ 229 (418)
T PRK00683 170 LSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV--------------QEIM------ 229 (418)
T ss_pred CCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH--------------HHHH------
T ss_conf 22121015784241221689999999999998467976468525411017888877--------------7777------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 113465100124565432212222222233332210356765-1012103455431147664433101000365311331
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~-lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
T Consensus 230 ~~~~~-------------~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v---~~~~Gv~fi 293 (418)
T PRK00683 230 RLLDK-------------GSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYL---GEKDGVHYI 293 (418)
T ss_pred HHHCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCCEEE
T ss_conf 77445-------------31016544032988999999999857999999999997348841113688---881782376
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
Q ss_conf 00025653210125777874111026871388512354171058999999999986499899998803898998511379
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~ 422 (472)
T Consensus 294 NDSKaTN~~a~~~AL~s~~~-------~iilI~GG-----~~K~~d~~~L~~~~~~~-vk~v~~~G~~~~~i~~~l~~~~ 360 (418)
T PRK00683 294 NDSKATTVSAVEKALLAVGK-------DVIVILGG-----RNKGGDFPSLLPVLRQT-AKHVVAMGECRQEIAQALSEKF 360 (418)
T ss_pred CCCCCCCHHHHHHHHHHCCC-------CCEEEECC-----CCCCCCHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCC
T ss_conf 37767898999999985678-------85899757-----87667869999998631-8499996889999999875699
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 7999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
T Consensus 361 ~~~~~~~l~eAv~~a~~~a~~gd~VLLSPacaSfD~F~nyeeRG~~Fk~lV~~l~ 415 (418)
T PRK00683 361 PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAYFKQLVGEME 415 (418)
T ss_pred CEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8798598999999999847898989989755010021599999999999999732