HHsearch alignment for GI: 254781101 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=402.01 Aligned_cols=336 Identities=18% Similarity=0.242 Sum_probs=258.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99830699399983036542012334677775201122212211014574100012322144430156644332112122
Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 (472)
Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472)
T Consensus 97 ~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~d~~VlElSSfQ---l~-~~~ 166 (450)
T PRK01368 97 LFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN----IGVPA--LQAKASKDGYVLELSSFQ---LD-LVK 166 (450)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCHHH--HHCCCCCCEEEEEECCCC---HH-CCC
T ss_conf 997667997799968999748999999999975996289625----56366--525268975999935652---20-363
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223
Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472)
Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472)
T Consensus 167 ~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f~~~~~~~~g- 245 (450)
T PRK01368 167 TFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENG- 245 (450)
T ss_pred CCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-
T ss_conf 4798789994688779877268789999999999658988889997874889999986300455169740345324477-
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 4421134651001245-654322122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 261 RKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 261 ~~i~~~~~~~~~~~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
T Consensus 246 --~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V---~~~~gv 320 (450)
T PRK01368 246 --ISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI---GSINNI 320 (450)
T ss_pred --EEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE---EEECCE
T ss_conf --488547335520155330045211357565899999999999980997777787642467700146899---998999
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
T Consensus 321 ~~iNDSKaTN~~a~~~Al~~~~--------~i~lI~GG-----~~K~~d~~~l~~~~~--~v~~~~l~G~~~~~~~~~~~ 385 (450)
T PRK01368 321 SFYNDSKATNAISAVQSIKALD--------NIYWLAGG-----IPKEGGIEEIKPYFS--KIKKAYFYGQAKEMFANTAK 385 (450)
T ss_pred EEECCCCCCCHHHHHHHHHCCC--------CEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHCC
T ss_conf 9971788789999999985689--------73999941-----577788799998874--38799998978999998605
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCE----EEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf 379799978989999999984478989----9997---71---------325489999999985
Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDV----VVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdi----VLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
T Consensus 386 ~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLlSPacaSfD~f~nye~RG~~F~~lv~~L~~~ 449 (450)
T PRK01368 386 NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLSSILILE 449 (450)
T ss_pred CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8987696499999999999997557878997996860204013179999999999999998755