HHsearch alignment for GI: 254781101 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=392.94 Aligned_cols=322 Identities=19% Similarity=0.255 Sum_probs=241.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
T Consensus 112 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----IG~p~l~l~~~~~~~~~VlElSSfQ---l~~-~~~~~p~ 183 (457)
T PRK01390 112 PDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN----IGTAILSLEPPKAGRVYVVECSSYQ---IDL-TPSLDPT 183 (457)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHCCCCCCCCCCEEEEEECCCH---HHH-HHCCCCC
T ss_conf 7898899928996498999999999973998699666----2401112346889966999925752---654-4006998
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 0255531210123444578888654331037622101210134246899875201233333222222222--22223442
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKW 263 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~i 263 (472)
T Consensus 184 iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~~~~~~~-~~~~~s~~~~~~~g~~~~~- 258 (457)
T PRK01390 184 VGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADRLERAGK-RVVRISVEKPLARGIYADG- 258 (457)
T ss_pred EEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCEEEEC-
T ss_conf 8999178877865508999999999998557---9869996888889999999876388-4999716765668649857-
Q ss_pred CCCCCCCCCCCCCCCCCC---CC--CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 113465100124565432---21--2222222233332210356765101210345543114766443310100036531
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSM---EV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~---~~--~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~ 338 (472)
T Consensus 259 -----~~~~~~-~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~V---~~~~G 329 (457)
T PRK01390 259 -----GKLVRA-TGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQV---GRRGK 329 (457)
T ss_pred -----CEEEEC-CCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EECCC
T ss_conf -----889984-798345443143234577542699999999999981898999999997489999852797---54278
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
Q ss_conf 13310002565321012577787411102687138851235417105899999999998649989999880389899851
Q gi|254781101|r 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 (472)
Q Consensus 339 ~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~ 418 (472)
T Consensus 330 v~~iNDSKaTN~~at~~Al~s~~--------~i~lI~GG~-----~K~~d~~~l~~~~~--~v~~~~liG~~~~~~~~~l 394 (457)
T PRK01390 330 VLFVNDSKATNADAAAPALSSFP--------NIYWIAGGK-----PKAGGIESLAPFFP--RIAKAYLIGEAAEEFAATL 394 (457)
T ss_pred CEEECCCCCCCHHHHHHHHHCCC--------CEEEEECCC-----CCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHH
T ss_conf 33853776789899999997378--------859994504-----78889799999874--3359999898889999987
Q ss_pred CCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 13797999789899999999844----789899997---71---------325489999999
Q gi|254781101|r 419 PRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 419 ~~~~~~~~~~~~e~a~~~l~~~~----~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 395 ~~~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L 456 (457)
T PRK01390 395 GGAVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQAL 456 (457)
T ss_pred HCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36798798598999999999999851899998997962404014269999999999999868