HHsearch alignment for GI: 254781101 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=392.94  Aligned_cols=322  Identities=19%  Similarity=0.255  Sum_probs=241.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r  106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH  185 (472)
Q Consensus       106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~  185 (472)
T Consensus       112 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----IG~p~l~l~~~~~~~~~VlElSSfQ---l~~-~~~~~p~  183 (457)
T PRK01390        112 PDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN----IGTAILSLEPPKAGRVYVVECSSYQ---IDL-TPSLDPT  183 (457)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHCCCCCCCCCCEEEEEECCCH---HHH-HHCCCCC
T ss_conf             7898899928996498999999999973998699666----2401112346889966999925752---654-4006998


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             0255531210123444578888654331037622101210134246899875201233333222222222--22223442
Q gi|254781101|r  186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKW  263 (472)
Q Consensus       186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~i  263 (472)
T Consensus       184 iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~~~~~~~-~~~~~s~~~~~~~g~~~~~-  258 (457)
T PRK01390        184 VGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADRLERAGK-RVVRISVEKPLARGIYADG-  258 (457)
T ss_pred             EEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCEEEEC-
T ss_conf             8999178877865508999999999998557---9869996888889999999876388-4999716765668649857-


Q ss_pred             CCCCCCCCCCCCCCCCCC---CC--CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf             113465100124565432---21--2222222233332210356765101210345543114766443310100036531
Q gi|254781101|r  264 KQCSEQSWMEVQLQGKSM---EV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF  338 (472)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~---~~--~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~  338 (472)
T Consensus       259 -----~~~~~~-~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~V---~~~~G  329 (457)
T PRK01390        259 -----GKLVRA-TGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQV---GRRGK  329 (457)
T ss_pred             -----CEEEEC-CCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EECCC
T ss_conf             -----889984-798345443143234577542699999999999981898999999997489999852797---54278


Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
Q ss_conf             13310002565321012577787411102687138851235417105899999999998649989999880389899851
Q gi|254781101|r  339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL  418 (472)
Q Consensus       339 ~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~  418 (472)
T Consensus       330 v~~iNDSKaTN~~at~~Al~s~~--------~i~lI~GG~-----~K~~d~~~l~~~~~--~v~~~~liG~~~~~~~~~l  394 (457)
T PRK01390        330 VLFVNDSKATNADAAAPALSSFP--------NIYWIAGGK-----PKAGGIESLAPFFP--RIAKAYLIGEAAEEFAATL  394 (457)
T ss_pred             CEEECCCCCCCHHHHHHHHHCCC--------CEEEEECCC-----CCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHH
T ss_conf             33853776789899999997378--------859994504-----78889799999874--3359999898889999987


Q ss_pred             CCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf             13797999789899999999844----789899997---71---------325489999999
Q gi|254781101|r  419 PRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVK---SS---------NSCGFYRLINLL  464 (472)
Q Consensus       419 ~~~~~~~~~~~~e~a~~~l~~~~----~~gdiVLiK---GS---------r~~~le~iv~~L  464 (472)
T Consensus       395 ~~~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L  456 (457)
T PRK01390        395 GGAVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQAL  456 (457)
T ss_pred             HCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             36798798598999999999999851899998997962404014269999999999999868